Lcy10g013010 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g013010
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ubiquitin-like-specific protease 1D
Location	Chr10: 41196353 .. 41196685 (+)
RNA-Seq Expression	Lcy10g013010
Synteny	Lcy10g013010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCGAGAGAAAATGGCAAAGAGGCCTCTGAACATTGGCTGGGATAAACTTTTCGTCTGTAAAGACGAGGAGCCTCCACCGGATATAGTCATTCAGATTCAGTCCCCCATCACGACCTCCAAACACTTTGATATGGACTCCGATCGGCAACATTTGGTTCGAGAAAACTACCAGAAGCTTAGCGATGCCGAACTGGAAGATAGGATTCGCAGAATGAAGAAACTCTATGATACTAAGGCTTGCAAAATTTCCAGACAAAGGGCAAAAGTATCTTCGCTATCTGGAGCTGTCCGAGGAAGAGAGGGAATCCAGAAAGCTCCGTCAAGTTGA

mRNA sequence

ATGGAGCGAGAGAAAATGGCAAAGAGGCCTCTGAACATTGGCTGGGATAAACTTTTCGTCTGTAAAGACGAGGAGCCTCCACCGGATATAGTCATTCAGATTCAGTCCCCCATCACGACCTCCAAACACTTTGATATGGACTCCGATCGGCAACATTTGGTTCGAGAAAACTACCAGAAGCTTAGCGATGCCGAACTGGAAGATAGGATTCGCAGAATGAAGAAACTCTATGATACTAAGGCTTGCAAAATTTCCAGACAAAGGGCAAAAGTATCTTCGCTATCTGGAGCTGTCCGAGGAAGAGAGGGAATCCAGAAAGCTCCGTCAAGTTGA

Coding sequence (CDS)

ATGGAGCGAGAGAAAATGGCAAAGAGGCCTCTGAACATTGGCTGGGATAAACTTTTCGTCTGTAAAGACGAGGAGCCTCCACCGGATATAGTCATTCAGATTCAGTCCCCCATCACGACCTCCAAACACTTTGATATGGACTCCGATCGGCAACATTTGGTTCGAGAAAACTACCAGAAGCTTAGCGATGCCGAACTGGAAGATAGGATTCGCAGAATGAAGAAACTCTATGATACTAAGGCTTGCAAAATTTCCAGACAAAGGGCAAAAGTATCTTCGCTATCTGGAGCTGTCCGAGGAAGAGAGGGAATCCAGAAAGCTCCGTCAAGTTGA

Protein sequence

MEREKMAKRPLNIGWDKLFVCKDEEPPPDIVIQIQSPITTSKHFDMDSDRQHLVRENYQKLSDAELEDRIRRMKKLYDTKACKISRQRAKVSSLSGAVRGREGIQKAPSS

Homology

[Close]

BLAST of Lcy10g013010 vs. ExPASy TrEMBL
Match: A0A6J1DAG0 (ubiquitin-like-specific protease 1D isoform X2 OS=Momordica charantia OX=3673 GN=LOC111019156 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.7e-23
Identity = 56/85 (65.88%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MEREKMAKRPLNIGWDKLFVCKDEEPPPDIVIQIQSPIT-TSKHFDMDSDRQHLVRENYQ 60
          ME+EK  KRPLNI WDKL  C+DEEPPPD+VI+  +       H DMDSDRQHL RE YQ
Sbjct: 1  MEQEKTTKRPLNIDWDKLLGCEDEEPPPDVVIEPPTAAPHPQNHLDMDSDRQHLAREEYQ 60

Query: 61 KLSDAELEDRIRRMKKLYDTKACKI 85
          K SD ELED+IRRMK  Y+TKACK+
Sbjct: 61 KFSDVELEDKIRRMKSFYETKACKL 85

[Close]

BLAST of Lcy10g013010 vs. ExPASy TrEMBL
Match: A0A6J1DC74 (ubiquitin-like-specific protease 1D isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019156 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.7e-23
Identity = 56/85 (65.88%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MEREKMAKRPLNIGWDKLFVCKDEEPPPDIVIQIQSPIT-TSKHFDMDSDRQHLVRENYQ 60
          ME+EK  KRPLNI WDKL  C+DEEPPPD+VI+  +       H DMDSDRQHL RE YQ
Sbjct: 1  MEQEKTTKRPLNIDWDKLLGCEDEEPPPDVVIEPPTAAPHPQNHLDMDSDRQHLAREEYQ 60

Query: 61 KLSDAELEDRIRRMKKLYDTKACKI 85
          K SD ELED+IRRMK  Y+TKACK+
Sbjct: 61 KFSDVELEDKIRRMKSFYETKACKL 85

[Close]

BLAST of Lcy10g013010 vs. ExPASy TrEMBL
Match: A0A6J1DDS3 (ubiquitin-like-specific protease 1D isoform X3 OS=Momordica charantia OX=3673 GN=LOC111019156 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.7e-23
Identity = 56/85 (65.88%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MEREKMAKRPLNIGWDKLFVCKDEEPPPDIVIQIQSPIT-TSKHFDMDSDRQHLVRENYQ 60
          ME+EK  KRPLNI WDKL  C+DEEPPPD+VI+  +       H DMDSDRQHL RE YQ
Sbjct: 1  MEQEKTTKRPLNIDWDKLLGCEDEEPPPDVVIEPPTAAPHPQNHLDMDSDRQHLAREEYQ 60

Query: 61 KLSDAELEDRIRRMKKLYDTKACKI 85
          K SD ELED+IRRMK  Y+TKACK+
Sbjct: 61 KFSDVELEDKIRRMKSFYETKACKL 85

[Close]

BLAST of Lcy10g013010 vs. ExPASy TrEMBL
Match: A0A6J1GXU1 (ubiquitin-like-specific protease 1D OS=Cucurbita moschata OX=3662 GN=LOC111458184 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1  MEREKMAKRPLNIGWDKLFVCKDEEPPPDIVIQIQSPITTSKHFDMDSDRQHLVRENYQK 60
          M++ K +KRPLNI WDKL  CKD+EP PD+V  IQ  ITTS + +MDSDRQ++VRE YQK
Sbjct: 3  MKQGKTSKRPLNIVWDKLLGCKDDEPTPDLV--IQPTITTSNYLEMDSDRQYVVREEYQK 62

Query: 61 LSDAELEDRIRRMKKLYDTKACKI 85
          LSD ELED+IRRMK+ YD+ ACK+
Sbjct: 63 LSDVELEDKIRRMKQFYDSWACKL 84

[Close]

BLAST of Lcy10g013010 vs. ExPASy TrEMBL
Match: A0A6J1I6K2 (LOW QUALITY PROTEIN: ubiquitin-like-specific protease 1D OS=Cucurbita maxima OX=3661 GN=LOC111470064 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.3e-20
Identity = 51/84 (60.71%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1  MEREKMAKRPLNIGWDKLFVCKDEEPPPDIVIQIQSPITTSKHFDMDSDRQHLVRENYQK 60
          +++EK +KRPLNI WD L  CKD+EP PD+VI +  P     +  MDSDRQH+VRE YQK
Sbjct: 3  LKQEKTSKRPLNIVWDNLLGCKDDEPTPDLVI-LSPPSRPXNYLQMDSDRQHVVREEYQK 62

Query: 61 LSDAELEDRIRRMKKLYDTKACKI 85
          LSD ELED+IRRMK+ YD+ ACK+
Sbjct: 63 LSDVELEDKIRRMKQFYDSWACKL 85

[Close]

BLAST of Lcy10g013010 vs. NCBI nr
Match: XP_022151166.1 (ubiquitin-like-specific protease 1D isoform X3 [Momordica charantia])

HSP 1 Score: 117.1 bits (292), Expect = 9.7e-23
Identity = 56/85 (65.88%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MEREKMAKRPLNIGWDKLFVCKDEEPPPDIVIQIQSPIT-TSKHFDMDSDRQHLVRENYQ 60
          ME+EK  KRPLNI WDKL  C+DEEPPPD+VI+  +       H DMDSDRQHL RE YQ
Sbjct: 1  MEQEKTTKRPLNIDWDKLLGCEDEEPPPDVVIEPPTAAPHPQNHLDMDSDRQHLAREEYQ 60

Query: 61 KLSDAELEDRIRRMKKLYDTKACKI 85
          K SD ELED+IRRMK  Y+TKACK+
Sbjct: 61 KFSDVELEDKIRRMKSFYETKACKL 85

[Close]

BLAST of Lcy10g013010 vs. NCBI nr
Match: XP_022151165.1 (ubiquitin-like-specific protease 1D isoform X2 [Momordica charantia])

HSP 1 Score: 117.1 bits (292), Expect = 9.7e-23
Identity = 56/85 (65.88%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MEREKMAKRPLNIGWDKLFVCKDEEPPPDIVIQIQSPIT-TSKHFDMDSDRQHLVRENYQ 60
          ME+EK  KRPLNI WDKL  C+DEEPPPD+VI+  +       H DMDSDRQHL RE YQ
Sbjct: 1  MEQEKTTKRPLNIDWDKLLGCEDEEPPPDVVIEPPTAAPHPQNHLDMDSDRQHLAREEYQ 60

Query: 61 KLSDAELEDRIRRMKKLYDTKACKI 85
          K SD ELED+IRRMK  Y+TKACK+
Sbjct: 61 KFSDVELEDKIRRMKSFYETKACKL 85

[Close]

BLAST of Lcy10g013010 vs. NCBI nr
Match: XP_022151164.1 (ubiquitin-like-specific protease 1D isoform X1 [Momordica charantia])

HSP 1 Score: 117.1 bits (292), Expect = 9.7e-23
Identity = 56/85 (65.88%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MEREKMAKRPLNIGWDKLFVCKDEEPPPDIVIQIQSPIT-TSKHFDMDSDRQHLVRENYQ 60
          ME+EK  KRPLNI WDKL  C+DEEPPPD+VI+  +       H DMDSDRQHL RE YQ
Sbjct: 1  MEQEKTTKRPLNIDWDKLLGCEDEEPPPDVVIEPPTAAPHPQNHLDMDSDRQHLAREEYQ 60

Query: 61 KLSDAELEDRIRRMKKLYDTKACKI 85
          K SD ELED+IRRMK  Y+TKACK+
Sbjct: 61 KFSDVELEDKIRRMKSFYETKACKL 85

[Close]

BLAST of Lcy10g013010 vs. NCBI nr
Match: KAG7032277.1 (Ubiquitin-like-specific protease 1D, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.7 bits (278), Expect = 4.1e-21
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1   MEREKMAKRPLNIGWDKLFVCKDEEPPPDIVIQIQSPITTSKHFDMDSDRQHLVRENYQK 60
           M++ K +KRPLNI WDKL  CKD+EP PD+V  IQ  ITTS + +MDSDRQ++VRE YQK
Sbjct: 36  MKQGKTSKRPLNIVWDKLLGCKDDEPTPDLV--IQPTITTSNYLEMDSDRQYVVREEYQK 95

Query: 61  LSDAELEDRIRRMKKLYDTKACKI 85
           LSD ELED+IRRMK+ YD+ ACK+
Sbjct: 96  LSDVELEDKIRRMKQFYDSWACKL 117

[Close]

BLAST of Lcy10g013010 vs. NCBI nr
Match: XP_023551871.1 (ubiquitin-like-specific protease 1D [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.7 bits (278), Expect = 4.1e-21
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1  MEREKMAKRPLNIGWDKLFVCKDEEPPPDIVIQIQSPITTSKHFDMDSDRQHLVRENYQK 60
          M++ K +KRPLNI WDKL  CKD+EP PD+V  IQ  ITTS + +MDSDRQ++VRE YQK
Sbjct: 3  MKQGKTSKRPLNIVWDKLLGCKDDEPTPDLV--IQPTITTSNYLEMDSDRQYVVREEYQK 62

Query: 61 LSDAELEDRIRRMKKLYDTKACKI 85
          LSD ELED+IRRMK+ YD+ ACK+
Sbjct: 63 LSDVELEDKIRRMKQFYDSWACKL 84

The following BLAST results are available for this feature:

BLAST of Lcy10g013010 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g013010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAG0	4.7e-23	65.88	ubiquitin-like-specific protease 1D isoform X2 OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1DC74	4.7e-23	65.88	ubiquitin-like-specific protease 1D isoform X1 OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1DDS3	4.7e-23	65.88	ubiquitin-like-specific protease 1D isoform X3 OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1GXU1	2.0e-21	65.48	ubiquitin-like-specific protease 1D OS=Cucurbita moschata OX=3662 GN=LOC11145818...	[more]
A0A6J1I6K2	6.3e-20	60.71	LOW QUALITY PROTEIN: ubiquitin-like-specific protease 1D OS=Cucurbita maxima OX=...	[more]

BLAST of Lcy10g013010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151166.1	9.7e-23	65.88	ubiquitin-like-specific protease 1D isoform X3 [Momordica charantia]	[more]
XP_022151165.1	9.7e-23	65.88	ubiquitin-like-specific protease 1D isoform X2 [Momordica charantia]	[more]
XP_022151164.1	9.7e-23	65.88	ubiquitin-like-specific protease 1D isoform X1 [Momordica charantia]	[more]
KAG7032277.1	4.1e-21	65.48	Ubiquitin-like-specific protease 1D, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_023551871.1	4.1e-21	65.48	ubiquitin-like-specific protease 1D [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy10g013010 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g013010.1	Lcy10g013010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity