Lcy10g012500 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g012500
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr10: 40803607 .. 40805941 (-)
RNA-Seq Expression	Lcy10g012500
Synteny	Lcy10g012500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAGGCACGCATCTTTAGGTAGGTGACGAAACCATGACGGCAACAGCGATTTGGATTGGATATAGCTTTCCGATTCTTTAGAAAATATAATACAATCGTGCGATTATCCACAAACAGAGCTGTGATCCGTATGATGAACAAAAAAACAAAGCGATCGCAATGTAGCTAGTAGAAGAAAACGTGAACGTAAAACGCATTCACATTCAATTGGTTGAAATGTTTGTTGAGTTTGATTTTCTTAGGTTAATTTTTCGGTCAACTTTCCATTTCAGATTTTTGGCTTCCATTACTCCGCTCGATCGAAATCCTGTGGCGTTGGCCTTCTCAAAATGTCAAATTTTTCCTACTTTCAATCATATGCTTCAATCTTATTTTCCCCTCTTTTTGTCTTTTCTTTTTCTCTTTTTTTTTTTTTTTTACATGGGTTTAAAAATTGCATTTTAAGAAAATTTTTGTAGATGCAAGCTTATCCATCTCACTGTGGATAGATATTAGATATAAATGAGTGTTCATGTTTATCCTTTTTTTGTAACTTGCTTCTATTTTTTATGTTAAATAATTTATTGTCTGTCCCCTCAATTTTCTTTTCTTTTTTTTTTTTCAATATTCGTGTTAAGTTAAACAATATGCTAGAAAAATAAAATTTTGAGATAATAAATATAAGATAGCAATTTTTTAAAAAATTGAACTCCAATAAAAAAAATAATAATAATTCACATTTTAAATGAAAGTGGAAGTATTTTTCTTTCTTTTTTTTTTTAGTTCAACTATGACAATGTAAGCATGTAAGCATGTATTTACCTATGAGCAAACATAAATAATTTTTTTTTTAGTACAACAATATTTAGGGATGGGATTCGAATCTCTGACCTCTTGGTCGTTGAGTTATGCTCGCTTTAGTTAAATAATCTTTTTTTAACTTTCCTTTTTAGATTAATATAAATTATATAAGCCTTAAATAAGACAAATGTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAAGAAGACAAATGTGTTTTAACGGTTGCTTGGTGCTGGCTAAAACATCAATAATGTGAGAGGATAAAATTAAGATGATATATCTCAAGTGGGTATCGGTTCTTTTAGTAGTTTTTGGATTCTTGACATATAATTTGAATATACTTTCAATTATTTATAGATCTAATAGATCTAATTGATACAATCCTGAAAGTTTAGAAACTAAACTTGTAATAAAACATTAGTCTAATTTAGACTAAATCTCAATTTGGTAACTATAGTTTGATTCAACTTTATGAATCATACCTAAGGTATTTATTACCTACATTAAAATCTATTCATTTTTTCTTGTTTTTTATTTAGCTCTAAACCTAGTACGACTAGATAAAGAATAATGCTAACTCTATCATGTAAAAAATGTGTACATATTCAATAAAATAAGAGTGTGTATGTAGAGAATTAGTGTGCCAAATAAGGTGGATGGGTATTGTCCTGTGTGTAAGGAGGAGTTTGAGACTACCAATCATGCTCTATTTCAATGTAATAGGGCAAAGGAAGTCTGGGATATAATTTTTCCGCTCATGGATAATGTTACTAGGTGTCAAATGGATGTAAAAGATCGTTGGTTGGGCCTAATTGATTGTAGGGATCGAGATTTATAGTGTATTTGCGTAGGGACATGGGCTATCTGGAATGATCGGAATAGTTTGCTTTATAATAAGTCTGTTCCGAATGTTGTTAATCGGTGTGAATGGATAGCCTCATACCTAGATGATTATAGGAAGGCGAATCCGAGAGGAGCAGTGTTGCAACAGTCGAAGGAAGACGTTTCTGCAATCATCTCAGGTAGCGAGGACATCATTTTACACTCTGACGCGGCGTTCATGGGAGAGGGGGAACAATGTGGGATTGGTTTAGTGATGCGTGACAGGTATGGAAATCTTAAGGTTGTTCAGTCTTTAAGATCGGTGGGCTGCTCATATCCGTTGGAAGCAGAAGTGGTTGCGGTGTTGCAAGGTCTTCGTCTGGCTAGGGAGTTGAATGTGTCTCGATTGACGATCTTATCAGACTCGTTGAATGTAACCAGGTATGTTAATGAGGAGATCCAATGCCATACTAGTATTGCAACGACCATCTGGGATATTCAAGAAGCCTGCAAGTTTTTTGAGACGGTTCGTTTTAAATATATTAGTCGTAGGTTTAATAGTTTTGCTCATAAACTGGCCCGTGTGGGCAAATCATGTTCGACGCCAGCTTTGTGGCTACAACACTATCCTCAATGGATGGTTAGTTTATCGCTCCAAGAGCGATTTCTGTTCGTATCCCATCGGGATTTGTTTGTTTCTTAA

mRNA sequence

ATGTTCAGGCACGCATCTTTAGCCTCATACCTAGATGATTATAGGAAGGCGAATCCGAGAGGAGCAGTGTTGCAACAGTCGAAGGAAGACGTTTCTGCAATCATCTCAGGTAGCGAGGACATCATTTTACACTCTGACGCGGCGTTCATGGGAGAGGGGGAACAATGTGGGATTGGTTTAGTGATGCGTGACAGGTATGGAAATCTTAAGGTTGTTCAGTCTTTAAGATCGGTGGGCTGCTCATATCCGTTGGAAGCAGAAGTGGTTGCGGTGTTGCAAGGTCTTCGTCTGGCTAGGGAGTTGAATGTGTCTCGATTGACGATCTTATCAGACTCGTTGAATGTAACCAGGTATGTTAATGAGGAGATCCAATGCCATACTAGTATTGCAACGACCATCTGGGATATTCAAGAAGCCTGCAAGTTTTTTGAGACGGTTCGTTTTAAATATATTAGTCGTAGGTTTAATAGTTTTGCTCATAAACTGGCCCGTGTGGGCAAATCATGTTCGACGCCAGCTTTGTGGCTACAACACTATCCTCAATGGATGGTTAGTTTATCGCTCCAAGAGCGATTTCTGTTCGTATCCCATCGGGATTTGTTTGTTTCTTAA

Coding sequence (CDS)

ATGTTCAGGCACGCATCTTTAGCCTCATACCTAGATGATTATAGGAAGGCGAATCCGAGAGGAGCAGTGTTGCAACAGTCGAAGGAAGACGTTTCTGCAATCATCTCAGGTAGCGAGGACATCATTTTACACTCTGACGCGGCGTTCATGGGAGAGGGGGAACAATGTGGGATTGGTTTAGTGATGCGTGACAGGTATGGAAATCTTAAGGTTGTTCAGTCTTTAAGATCGGTGGGCTGCTCATATCCGTTGGAAGCAGAAGTGGTTGCGGTGTTGCAAGGTCTTCGTCTGGCTAGGGAGTTGAATGTGTCTCGATTGACGATCTTATCAGACTCGTTGAATGTAACCAGGTATGTTAATGAGGAGATCCAATGCCATACTAGTATTGCAACGACCATCTGGGATATTCAAGAAGCCTGCAAGTTTTTTGAGACGGTTCGTTTTAAATATATTAGTCGTAGGTTTAATAGTTTTGCTCATAAACTGGCCCGTGTGGGCAAATCATGTTCGACGCCAGCTTTGTGGCTACAACACTATCCTCAATGGATGGTTAGTTTATCGCTCCAAGAGCGATTTCTGTTCGTATCCCATCGGGATTTGTTTGTTTCTTAA

Protein sequence

MFRHASLASYLDDYRKANPRGAVLQQSKEDVSAIISGSEDIILHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYPQWMVSLSLQERFLFVSHRDLFVS

Homology

[Close]

BLAST of Lcy10g012500 vs. ExPASy TrEMBL
Match: A0A2N9GM07 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28341 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-10
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = 0


Query: 43   LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELN 102
            +++D A    G   GIG+V+RD  G+    QS R++G       E +A+ +G  LAREL 
Sbjct: 970  VNTDGATFAGGRGAGIGVVIRDHIGSFLAGQSCRTIGSHSAEVIEALAIQEGCLLARELG 1029

Query: 103  VSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHKL 162
            +  + + SD+ N+   +N E     +I   I +I    + F T + +Y  R  N  AH L
Sbjct: 1030 LRHIVVESDAQNIVHAINAEQHDGPNIGHIIANIGVLLRSFSTYKVEYSPRDSNVVAHLL 1089

Query: 163  ARVGKSCSTPALWLQHYPQWMVSLSLQERFL 194
            A+  K   T  LW    P ++     +ER L
Sbjct: 1090 AKYAKEIETRRLWRNDGPDFIQYQLKKERSL 1120

[Close]

BLAST of Lcy10g012500 vs. ExPASy TrEMBL
Match: A0A2I4ERH4 (uncharacterized protein LOC108992010 OS=Juglans regia OX=51240 GN=LOC108992010 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.8e-10
Identity = 44/138 (31.88%), Postives = 71/138 (51.45%), Query Frame = 0


Query: 43  LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELN 102
           L+ D AF  +G   GIG V+RD  G + +  ++R        E E +A+L+GL+L   L 
Sbjct: 624 LNVDGAFSQDGSVTGIGAVLRDSKGEVLMAAAIRERASLNVYELEGLAILRGLQLCLHLG 683

Query: 103 VSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHKL 162
           +  L+I SDSL V    +   Q   ++   I ++++    F+T    +++R  N   H L
Sbjct: 684 IYHLSIESDSLLVVNEFDRNGQSMATMGNVISEVRKLMFCFQTCELTHVNRSCNIVTHTL 743

Query: 163 ARVGKSCSTPALWLQHYP 181
           A++G S S  +LW   YP
Sbjct: 744 AKLGLSVSEISLWWGSYP 761

[Close]

BLAST of Lcy10g012500 vs. ExPASy TrEMBL
Match: A0A251PKK0 (RNase H domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_4G143500 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.8e-10
Identity = 48/145 (33.10%), Postives = 73/145 (50.34%), Query Frame = 0


Query: 43  LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELN 102
           L+ DAAF+ E    GIG V+R+  G +    +L     +    AE++A L G++ AR+  
Sbjct: 51  LNVDAAFIPETGVGGIGAVVRNDKGEVMAAMALPLASATSSKHAEIMAFLFGMKFARDAG 110

Query: 103 VSRLTILSDSLNVTRYV-NEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHK 162
            S + I SDS  V   V  +E +   S    I DI+ + + FE V   Y  R  N  AH 
Sbjct: 111 CSSILIESDSQGVVNDVKKDEEESWASDGHLIGDIKRSLQHFEDVIISYSPRGVNQVAHF 170

Query: 163 LARVGKSCSTPALWLQHYPQWMVSL 187
           LA+   +C+T   W++  P W+ S+
Sbjct: 171 LAKHALNCNTIVTWIEEVPFWLESI 195

[Close]

BLAST of Lcy10g012500 vs. ExPASy TrEMBL
Match: A0A7N2MTJ9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.4e-10
Identity = 46/158 (29.11%), Postives = 80/158 (50.63%), Query Frame = 0


Query: 8   ASYLDDYRKANPRGAVLQQSKEDVSAIISGSEDII-LHSDAAFMGEGEQCGIGLVMRDRY 67
           + Y+++Y+ A           + V + I  SE+I  ++ D A   + +  G+G+++RD  
Sbjct: 156 SQYMEEYKAATEMLVCKAMVADGVRSWIPPSENIFKINVDGAVFADQKAVGVGVIIRDEK 215

Query: 68  GNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCH 127
           G L+   S + +     +EAE +A  QGL  AR++ +    I  DSL +   + E     
Sbjct: 216 GRLEAALSKKILAPLGAVEAEAMAYEQGLMFARDIGIHNFIIEGDSLIIYHALCESSNPP 275

Query: 128 TSIATTIWDIQEACKFFETVRFKYISRRFNSFAHKLAR 165
           +S+A  +  IQE C+ F  V F ++ R+ N  AH LA+
Sbjct: 276 SSVAAVVQGIQEMCREFHGVMFSHVRRQGNQPAHLLAK 313

[Close]

BLAST of Lcy10g012500 vs. ExPASy TrEMBL
Match: A0A2P6QJ46 (Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0066251 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.3e-09
Identity = 38/129 (29.46%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 56  CGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNV 115
           CG+G+V RD +G LK   ++  +G   P   E +A+L GLR A  +   RL I  D+L++
Sbjct: 14  CGLGVVFRDHFGVLKGAMAVPQIGYLSPRSVEALALLHGLRFAAHVGFGRLEIEGDALSI 73

Query: 116 TRYVNEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHKLARVGKSCSTPALW 175
              +  E    +     + +++   + FE     ++ R  N  AH+LA+     S P L 
Sbjct: 74  ITSLQVECDDLSLEGHLLEEVKRLVESFEFCSSHFVKREGNQVAHRLAKEALKVSQPFLC 133

Query: 176 LQHYPQWMV 185
           L+  P W++
Sbjct: 134 LESGPPWLI 142

[Close]

BLAST of Lcy10g012500 vs. NCBI nr
Match: XP_024950112.1 (uncharacterized protein LOC112496847 [Citrus sinensis])

HSP 1 Score: 75.5 bits (184), Expect = 6.0e-10
Identity = 49/135 (36.30%), Postives = 68/135 (50.37%), Query Frame = 0


Query: 46   DAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSR 105
            DAAF  +    G+G V+RD  G +      +++       AE  AVL GL+LAR  +VS 
Sbjct: 1247 DAAFNSKNLSAGVGAVIRDSNGKIVAAGVNQNLLKGSASLAEAEAVLWGLQLARNADVSS 1306

Query: 106  LTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHKLARV 165
            L I SD L V + VN      + I  TI  IQ   K F+ V   +I R  N+ AH LA++
Sbjct: 1307 LIIESDCLEVVQLVNNTKGSRSEIFWTILAIQNQMKIFQKVVVNHIPRHCNACAHYLAKI 1366

Query: 166  GKSCSTPALWLQHYP 181
                 +P +WL + P
Sbjct: 1367 ALGKISPCMWLGNIP 1381

[Close]

BLAST of Lcy10g012500 vs. NCBI nr
Match: XP_018821989.1 (uncharacterized protein LOC108992010 [Juglans regia] >KAF5454504.1 hypothetical protein F2P56_024162 [Juglans regia])

HSP 1 Score: 75.1 bits (183), Expect = 7.8e-10
Identity = 44/138 (31.88%), Postives = 71/138 (51.45%), Query Frame = 0


Query: 43  LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELN 102
           L+ D AF  +G   GIG V+RD  G + +  ++R        E E +A+L+GL+L   L 
Sbjct: 624 LNVDGAFSQDGSVTGIGAVLRDSKGEVLMAAAIRERASLNVYELEGLAILRGLQLCLHLG 683

Query: 103 VSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHKL 162
           +  L+I SDSL V    +   Q   ++   I ++++    F+T    +++R  N   H L
Sbjct: 684 IYHLSIESDSLLVVNEFDRNGQSMATMGNVISEVRKLMFCFQTCELTHVNRSCNIVTHTL 743

Query: 163 ARVGKSCSTPALWLQHYP 181
           A++G S S  +LW   YP
Sbjct: 744 AKLGLSVSEISLWWGSYP 761

[Close]

BLAST of Lcy10g012500 vs. NCBI nr
Match: ONI12089.1 (hypothetical protein PRUPE_4G143500 [Prunus persica])

HSP 1 Score: 75.1 bits (183), Expect = 7.8e-10
Identity = 48/145 (33.10%), Postives = 73/145 (50.34%), Query Frame = 0


Query: 43  LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELN 102
           L+ DAAF+ E    GIG V+R+  G +    +L     +    AE++A L G++ AR+  
Sbjct: 51  LNVDAAFIPETGVGGIGAVVRNDKGEVMAAMALPLASATSSKHAEIMAFLFGMKFARDAG 110

Query: 103 VSRLTILSDSLNVTRYV-NEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHK 162
            S + I SDS  V   V  +E +   S    I DI+ + + FE V   Y  R  N  AH 
Sbjct: 111 CSSILIESDSQGVVNDVKKDEEESWASDGHLIGDIKRSLQHFEDVIISYSPRGVNQVAHF 170

Query: 163 LARVGKSCSTPALWLQHYPQWMVSL 187
           LA+   +C+T   W++  P W+ S+
Sbjct: 171 LAKHALNCNTIVTWIEEVPFWLESI 195

[Close]

BLAST of Lcy10g012500 vs. NCBI nr
Match: XP_024157591.1 (uncharacterized protein LOC112165325 [Rosa chinensis])

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-09
Identity = 44/150 (29.33%), Postives = 76/150 (50.67%), Query Frame = 0


Query: 43   LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELN 102
            ++ D A  G+   CG+G+V RD  GNLK   ++  +G   P   E +A+L GLR A  + 
Sbjct: 1060 MNFDGAHDGKNGVCGLGVVFRDTQGNLKGAMAVPQIGNIAPRSIEALALLHGLRFALHVG 1119

Query: 103  VSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHKL 162
             + + I  D+L+V   + E  + +++    I +++   + F +    ++ R  N  AH+L
Sbjct: 1120 FTMIEIEGDALSVINALQENSEDYSAEGHLIDEVKFLVQSFTSCSSHFVKREGNKVAHRL 1179

Query: 163  ARVGKSCSTPALWLQHYPQWM---VSLSLQ 190
            A+     S P L L+  P W+   VS+  Q
Sbjct: 1180 AKEALKISQPFLCLESGPSWLHQCVSIDFQ 1209

[Close]

BLAST of Lcy10g012500 vs. NCBI nr
Match: XP_042962749.1 (uncharacterized protein LOC122297028 [Carya illinoinensis])

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-09
Identity = 50/191 (26.18%), Postives = 92/191 (48.17%), Query Frame = 0


Query: 9    SYLDDYRKANPRGAVLQQSKEDVSAII----SGSEDIILHSDAAFMGEGEQCGIGLVMRD 68
            S   D++KA     +L+ S  D   ++         + ++ D A  GE ++ GIGLV+RD
Sbjct: 964  SMQSDFKKAQ----LLESSSRDTPRVLIWKPPPQGSLKMNVDGATFGEIDKAGIGLVLRD 1023

Query: 69   RYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQ 128
              GN+ +  S      +     E  AVL+GL+   +  +++L + SD L +   +N   +
Sbjct: 1024 HEGNVLMTCSKIEHAVANSEFIEATAVLRGLQFGLQWGINKLVMESDCLFLINVLNSSSE 1083

Query: 129  CHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYPQWMV 188
            C +  A  I +I+    +F  + F ++ R+ N+ AH LAR  ++    ++W    P  + 
Sbjct: 1084 CLSDFAYVIDEIRRIRSYFHEISFVHVCRQGNNVAHGLARFARNVDDVSVWRDGCPSCVS 1143

Query: 189  SLSLQERFLFV 196
              +  +R +FV
Sbjct: 1144 QAAWLDRQVFV 1150

[Close]

BLAST of Lcy10g012500 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.1e-06
Identity = 40/141 (28.37%), Postives = 66/141 (46.81%), Query Frame = 0


Query: 46  DAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSR 105
           DA F  +  +   G ++R+ YG      S++    S PLEAE  A+L  L+       ++
Sbjct: 339 DAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQ 398

Query: 106 LTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHKLARV 165
           + +  D   +   +N  I  H+S+A  + DI      F +++F +I R+ N  AH LA+ 
Sbjct: 399 VFMEGDCQTLINLIN-GISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAKY 458

Query: 166 GKSCST-------PALWLQHY 180
           G + ST         +WL  Y
Sbjct: 459 GCTYSTFYSGSGSLPIWLDRY 478

[Close]

BLAST of Lcy10g012500 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 3.3e-06
Identity = 34/121 (28.10%), Postives = 60/121 (49.59%), Query Frame = 0


Query: 44  HSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNV 103
           ++DA +  + E+CGIG V+R+  G +K + +         LEAE+ A+   +        
Sbjct: 431 NTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAVLSLSRFQY 490

Query: 104 SRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHKLA 163
           + +   SDS  +   +N + +   S+  TI D+Q     F  V+F +I R  N+ A ++A
Sbjct: 491 NYVIFESDSQVLIEILNND-EIWPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAERVA 550

Query: 164 R 165
           R
Sbjct: 551 R 550

[Close]

BLAST of Lcy10g012500 vs. TAIR 10
Match: AT2G13980.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 4.3e-06
Identity = 43/143 (30.07%), Postives = 66/143 (46.15%), Query Frame = 0


Query: 46  DAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSR 105
           DA F  +        ++R+  G  +   SL+    S PLEAE  A+L  L+        R
Sbjct: 26  DAGFNVQNLDSTARWIIRNHDGIAQHWGSLQLDNTSTPLEAETKALLAALQQTWIRGYLR 85

Query: 106 LTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHKLARV 165
           + +  D   +T  V+     H  +A  + DI+   K F  V+F ++ R  N  AH+LA++
Sbjct: 86  VIMEGDCETLTNLVSGS-SSHNHLANLLDDIRIWAKKFSNVQFSFVRRGGNKVAHELAKL 145

Query: 166 G--------KSCSTPALWL-QHY 180
           G         SC+ P +WL QHY
Sbjct: 146 GCNSTCFYSDSCTLP-IWLHQHY 166

The following BLAST results are available for this feature:

BLAST of Lcy10g012500 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g012500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9GM07	2.9e-10	31.13	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2I4ERH4	3.8e-10	31.88	uncharacterized protein LOC108992010 OS=Juglans regia OX=51240 GN=LOC108992010 P...	[more]
A0A251PKK0	3.8e-10	33.10	RNase H domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_4G143500 PE...	[more]
A0A7N2MTJ9	6.4e-10	29.11	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2P6QJ46	9.3e-09	29.46	Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=7464...	[more]

BLAST of Lcy10g012500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024950112.1	6.0e-10	36.30	uncharacterized protein LOC112496847 [Citrus sinensis]	[more]
XP_018821989.1	7.8e-10	31.88	uncharacterized protein LOC108992010 [Juglans regia] >KAF5454504.1 hypothetical ...	[more]
ONI12089.1	7.8e-10	33.10	hypothetical protein PRUPE_4G143500 [Prunus persica]	[more]
XP_024157591.1	1.0e-09	29.33	uncharacterized protein LOC112165325 [Rosa chinensis]	[more]
XP_042962749.1	1.0e-09	26.18	uncharacterized protein LOC122297028 [Carya illinoinensis]	[more]

BLAST of Lcy10g012500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09510.1	1.1e-06	28.37	Ribonuclease H-like superfamily protein	[more]
AT4G29090.1	3.3e-06	28.10	Ribonuclease H-like superfamily protein	[more]
AT2G13980.1	4.3e-06	30.07	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 39..170 e-value: 7.8E-19 score: 70.0
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 45..164 e-value: 3.3E-23 score: 81.8
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 69..168 score: 8.913076
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 42..192
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 43..164 e-value: 2.13566E-22 score: 85.8288
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 40..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g012500.1	Lcy10g012500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity