Lcy10g011410 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g011410
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	translocator protein homolog
Location	Chr10: 39643753 .. 39644516 (-)
RNA-Seq Expression	Lcy10g011410
Synteny	Lcy10g011410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAAATCACAGATTTCATTTCGATCCAACAATGACTTCCAGACCGGAATCCAAGTACACCAAGGCCAAGAGAGCGCTCCGATCCCTCGCCGTCTCCGTCGCCATTCCCCTCTCCCTCACAATCGCCGTCATCTTCCTCTTCGGCCGCTCCTCCCGCCATTTCCCCAACCGGAACCGTCCGGTTTGGGTGGCGCCGCTCTGGTTCTTCCATCTCTCCTCGATCGGCTCCTCCTTCCTGATCGGCCTCGCCTCCTGGCTCGTTTGGGCCGACGGCGGCTTCCACGGCGGTTCCAATGCCCTTCCGCTCTACATCGCGCATCTCTCGCTCAGCGTCGTTTGGAATCCTCTCGTGCTCGTGATGCGCGCAGTTCCGCTTGCGTCTCTGTTCTGCGCCTTGGATTTTGTGACTCTGTTTGCTTGTTATCGGACCTTCAAGCGAGTGAATCCCTTCGCTAAGGATCTGATTAAGCCCTGTTTGGCTTGGACTGCCTATCTCTCTGCTGTTACTTATGTGTTTATTGATCTTTGATTCAGGATTTCGTTTTGCGGTTTTTGAAAAGATTTGTTCATCAAACTGTTAGGATGTTGTAGAATTTCATTTTTTCTTGATGAGACGGTACAAAAAAATTGTTAGAAGATTGAAAGTTTGTAAAATTAGGGGAATTGGTTATTTGTGAGTTCTTTGTGGAAAGGTAGGTTTGAACTTTGAAGTTTGATCTGTTTTTTGGATCTCTAAATTATGATGAGTTTTTGTTTCTTTACTT

mRNA sequence

CTCAAATCACAGATTTCATTTCGATCCAACAATGACTTCCAGACCGGAATCCAAGTACACCAAGGCCAAGAGAGCGCTCCGATCCCTCGCCGTCTCCGTCGCCATTCCCCTCTCCCTCACAATCGCCGTCATCTTCCTCTTCGGCCGCTCCTCCCGCCATTTCCCCAACCGGAACCGTCCGGTTTGGGTGGCGCCGCTCTGGTTCTTCCATCTCTCCTCGATCGGCTCCTCCTTCCTGATCGGCCTCGCCTCCTGGCTCGTTTGGGCCGACGGCGGCTTCCACGGCGGTTCCAATGCCCTTCCGCTCTACATCGCGCATCTCTCGCTCAGCGTCGTTTGGAATCCTCTCGTGCTCGTGATGCGCGCAGTTCCGCTTGCGTCTCTGTTCTGCGCCTTGGATTTTGTGACTCTGTTTGCTTGTTATCGGACCTTCAAGCGAGTGAATCCCTTCGCTAAGGATCTGATTAAGCCCTGTTTGGCTTGGACTGCCTATCTCTCTGCTGTTACTTATGTGTTTATTGATCTTTGATTCAGGATTTCGTTTTGCGGTTTTTGAAAAGATTTGTTCATCAAACTGTTAGGATGTTGTAGAATTTCATTTTTTCTTGATGAGACGGTACAAAAAAATTGTTAGAAGATTGAAAGTTTGTAAAATTAGGGGAATTGGTTATTTGTGAGTTCTTTGTGGAAAGGTAGGTTTGAACTTTGAAGTTTGATCTGTTTTTTGGATCTCTAAATTATGATGAGTTTTTGTTTCTTTACTT

Coding sequence (CDS)

ATGACTTCCAGACCGGAATCCAAGTACACCAAGGCCAAGAGAGCGCTCCGATCCCTCGCCGTCTCCGTCGCCATTCCCCTCTCCCTCACAATCGCCGTCATCTTCCTCTTCGGCCGCTCCTCCCGCCATTTCCCCAACCGGAACCGTCCGGTTTGGGTGGCGCCGCTCTGGTTCTTCCATCTCTCCTCGATCGGCTCCTCCTTCCTGATCGGCCTCGCCTCCTGGCTCGTTTGGGCCGACGGCGGCTTCCACGGCGGTTCCAATGCCCTTCCGCTCTACATCGCGCATCTCTCGCTCAGCGTCGTTTGGAATCCTCTCGTGCTCGTGATGCGCGCAGTTCCGCTTGCGTCTCTGTTCTGCGCCTTGGATTTTGTGACTCTGTTTGCTTGTTATCGGACCTTCAAGCGAGTGAATCCCTTCGCTAAGGATCTGATTAAGCCCTGTTTGGCTTGGACTGCCTATCTCTCTGCTGTTACTTATGTGTTTATTGATCTTTGA

Protein sequence

MTSRPESKYTKAKRALRSLAVSVAIPLSLTIAVIFLFGRSSRHFPNRNRPVWVAPLWFFHLSSIGSSFLIGLASWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVMRAVPLASLFCALDFVTLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAVTYVFIDL

Homology

[Close]

BLAST of Lcy10g011410 vs. ExPASy Swiss-Prot
Match: O82245 (Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.1e-28
Identity = 61/153 (39.87%), Postives = 88/153 (57.52%), Query Frame = 0


Query: 6   ESKYTKAKRALRSLAVSVAIPLSLTIAVIFLFGRSSRHFPNRNRPVWVAPLWFFHLSSIG 65
           + K   AKR L+SL V+VA P+ +T+   +  G S  +        W+ PLW  H + + 
Sbjct: 37  DQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLA 96

Query: 66  SSFLIGLASWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVMRAVPLASLFCALDFV 125
           SS L+GLA+WLVW DGGFH   NAL LY+A   L +VW+P+   + +             
Sbjct: 97  SSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSA 156

Query: 126 TLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAV 159
            LF CY+ F  ++P A +L+KPCLAW A+++AV
Sbjct: 157 ALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAV 189

[Close]

BLAST of Lcy10g011410 vs. ExPASy Swiss-Prot
Match: E2RDM9 (Translocator protein 2 OS=Canis lupus familiaris OX=9615 GN=TSPO2 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 6.4e-05
Identity = 43/145 (29.66%), Postives = 65/145 (44.83%), Query Frame = 0


Query: 20  AVSVAIP-LSLTIAVIFLFGRSSRHFPNRNRPVWVAPLWFFHLSSIGSSFLIGLASWLVW 79
           A+ VA+P L   +  +    R  R +    +P W  P        I   F++G AS+LVW
Sbjct: 6   AIFVALPHLGPILVSLLTRHRMIRWYDIPKKPPWCPPHKVLLAGWITIYFVMGYASYLVW 65

Query: 80  AD-GGFHGGSNALPLYIAHLSLSVVWNPLV--LVMRAVPLASLFCALDFVTLFACYRTFK 139
            D GG  G   ALPL +  + L+V W  L+      A  LA L   L +  + +    + 
Sbjct: 66  KDLGGGFGRPLALPLGLYAVQLAVSWAVLIFFFAAHAHGLALLHMLLLYGLVVSTALIWH 125

Query: 140 RVNPFAKDLIKPCLAWTAYLSAVTY 161
            +N  A  L+ P LAW    +++ Y
Sbjct: 126 PINKLAAVLLLPYLAWLTVTASIAY 150

[Close]

BLAST of Lcy10g011410 vs. ExPASy Swiss-Prot
Match: Q5TGU0 (Translocator protein 2 OS=Homo sapiens OX=9606 GN=TSPO2 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.2e-04
Identity = 34/95 (35.79%), Postives = 49/95 (51.58%), Query Frame = 0


Query: 69  LIGLASWLVWAD-GGFHGGSNALPLYIAHLSLSVVWNPLVL--VMRAVPLASLFCALDFV 128
           ++G AS+LVW D GG  G   ALPL +  + L++ W  LVL   +    LA L   L + 
Sbjct: 56  VVGYASYLVWKDLGGGLGWPLALPLGLYAVQLTISWTVLVLFFTVHNPGLALLHLLLLYG 115

Query: 129 TLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAVTY 161
            + +    +  +N  A  L+ P LAW    SA+TY
Sbjct: 116 LVVSTALIWHPINKLAALLLLPYLAWLTVTSALTY 150

[Close]

BLAST of Lcy10g011410 vs. ExPASy TrEMBL
Match: A0A6J1ICB9 (translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111474208 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.6e-78
Identity = 149/163 (91.41%), Postives = 155/163 (95.09%), Query Frame = 0


Query: 3   SRPESKYTKAKRALRSLAVSVAIPLSLTIAVIFLFGRSSRHFPNRNRPVWVAPLWFFHLS 62
           SRPESKYTKAKRALRSLAVSVAIPL+LTIAVIFLFGRSSRHFPNRNRP+WVAPLW  HLS
Sbjct: 9   SRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAPLWLLHLS 68

Query: 63  SIGSSFLIGLASWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVMRAVPLASLFCAL 122
           SI SSFLIGLA+WLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLV+RA+ LA LFC L
Sbjct: 69  SISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRALLLAFLFCVL 128

Query: 123 DFVTLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAVTYVFIDL 166
           DFVTL+ACYRTFKRVNPFAKDLIKPCLAWTAYL AVTYVFIDL
Sbjct: 129 DFVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 171

[Close]

BLAST of Lcy10g011410 vs. ExPASy TrEMBL
Match: A0A6J1FZS9 (translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111449384 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.8e-77
Identity = 148/163 (90.80%), Postives = 153/163 (93.87%), Query Frame = 0


Query: 3   SRPESKYTKAKRALRSLAVSVAIPLSLTIAVIFLFGRSSRHFPNRNRPVWVAPLWFFHLS 62
           SRPESKYTKAKRALRSLAVSVAIPL+LTIAVIFLFGRSSRHFPNRNRP+WVAPLW  HLS
Sbjct: 64  SRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAPLWLLHLS 123

Query: 63  SIGSSFLIGLASWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVMRAVPLASLFCAL 122
           SI SSFLIGLA+WLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLV+RA  LA LFC L
Sbjct: 124 SISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARLLAFLFCVL 183

Query: 123 DFVTLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAVTYVFIDL 166
           D VTL+ACYRTFKRVNPFAKDLIKPCLAWTAYL AVTYVFIDL
Sbjct: 184 DLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 226

[Close]

BLAST of Lcy10g011410 vs. ExPASy TrEMBL
Match: A0A5D3CWC4 (Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001010 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.9e-76
Identity = 143/163 (87.73%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 3   SRPESKYTKAKRALRSLAVSVAIPLSLTIAVIFLFGRSSRHFPNRNRPVWVAPLWFFHLS 62
           SRPESKYTKAKRALRSLAVSVAIP+SLTIAVIFLFGRSSRHFPNRNRP+W+ PLW   LS
Sbjct: 10  SRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHFPNRNRPIWIGPLWLLQLS 69

Query: 63  SIGSSFLIGLASWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVMRAVPLASLFCAL 122
           SIGSSFL+GLA+WLVWADGGFHGGSNALPLYIAHLSLSVVW+PLVLV+R+V +A LFC L
Sbjct: 70  SIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWSPLVLVIRSVVIAFLFCVL 129

Query: 123 DFVTLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAVTYVFIDL 166
           DFVTLFACYR F+RVNPFAKDL+KPCLAWTAYLSAVTYVFI L
Sbjct: 130 DFVTLFACYRAFERVNPFAKDLMKPCLAWTAYLSAVTYVFIHL 172

[Close]

BLAST of Lcy10g011410 vs. ExPASy TrEMBL
Match: A0A1S4DTF2 (translocator protein homolog OS=Cucumis melo OX=3656 GN=LOC107990392 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.9e-76
Identity = 143/163 (87.73%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 3   SRPESKYTKAKRALRSLAVSVAIPLSLTIAVIFLFGRSSRHFPNRNRPVWVAPLWFFHLS 62
           SRPESKYTKAKRALRSLAVSVAIP+SLTIAVIFLFGRSSRHFPNRNRP+W+ PLW   LS
Sbjct: 10  SRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHFPNRNRPIWIGPLWLLQLS 69

Query: 63  SIGSSFLIGLASWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVMRAVPLASLFCAL 122
           SIGSSFL+GLA+WLVWADGGFHGGSNALPLYIAHLSLSVVW+PLVLV+R+V +A LFC L
Sbjct: 70  SIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWSPLVLVIRSVVIAFLFCVL 129

Query: 123 DFVTLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAVTYVFIDL 166
           DFVTLFACYR F+RVNPFAKDL+KPCLAWTAYLSAVTYVFI L
Sbjct: 130 DFVTLFACYRAFERVNPFAKDLMKPCLAWTAYLSAVTYVFIHL 172

[Close]

BLAST of Lcy10g011410 vs. ExPASy TrEMBL
Match: A0A0A0L583 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154290 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 9.4e-76
Identity = 142/163 (87.12%), Postives = 152/163 (93.25%), Query Frame = 0


Query: 3   SRPESKYTKAKRALRSLAVSVAIPLSLTIAVIFLFGRSSRHFPNRNRPVWVAPLWFFHLS 62
           SRPESKYTKAKRALRSLAVSVAIP+SLTIA IFLFGRSSRH+PNRNRP+W+ PLW   LS
Sbjct: 10  SRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLS 69

Query: 63  SIGSSFLIGLASWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVMRAVPLASLFCAL 122
           SIGSSFL+GLA+WLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLV+R+V +A LFC L
Sbjct: 70  SIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVL 129

Query: 123 DFVTLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAVTYVFIDL 166
           D VTLFACY  FKRVNPFAKDL+KPCLAWTAYLSAVTYVFIDL
Sbjct: 130 DCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 172

[Close]

BLAST of Lcy10g011410 vs. NCBI nr
Match: XP_038878873.1 (translocator protein homolog [Benincasa hispida])

HSP 1 Score: 308.5 bits (789), Expect = 3.4e-80
Identity = 151/163 (92.64%), Postives = 157/163 (96.32%), Query Frame = 0


Query: 3   SRPESKYTKAKRALRSLAVSVAIPLSLTIAVIFLFGRSSRHFPNRNRPVWVAPLWFFHLS 62
           SRPESKYTKAKRALRSLAVSVAIPLSLTIAVIFLFGRS+RHFPNRNRP+W+ PLW  HLS
Sbjct: 10  SRPESKYTKAKRALRSLAVSVAIPLSLTIAVIFLFGRSARHFPNRNRPIWIGPLWLLHLS 69

Query: 63  SIGSSFLIGLASWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVMRAVPLASLFCAL 122
           SIGSSFLIGLA+WLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLV+R+V LA LFC L
Sbjct: 70  SIGSSFLIGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVLAFLFCVL 129

Query: 123 DFVTLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAVTYVFIDL 166
           DFVTLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAVTYVFIDL
Sbjct: 130 DFVTLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAVTYVFIDL 172

[Close]

BLAST of Lcy10g011410 vs. NCBI nr
Match: XP_022973726.1 (translocator protein homolog [Cucurbita maxima] >XP_022975172.1 translocator protein homolog [Cucurbita maxima])

HSP 1 Score: 301.2 bits (770), Expect = 5.4e-78
Identity = 149/163 (91.41%), Postives = 155/163 (95.09%), Query Frame = 0


Query: 3   SRPESKYTKAKRALRSLAVSVAIPLSLTIAVIFLFGRSSRHFPNRNRPVWVAPLWFFHLS 62
           SRPESKYTKAKRALRSLAVSVAIPL+LTIAVIFLFGRSSRHFPNRNRP+WVAPLW  HLS
Sbjct: 9   SRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAPLWLLHLS 68

Query: 63  SIGSSFLIGLASWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVMRAVPLASLFCAL 122
           SI SSFLIGLA+WLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLV+RA+ LA LFC L
Sbjct: 69  SISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRALLLAFLFCVL 128

Query: 123 DFVTLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAVTYVFIDL 166
           DFVTL+ACYRTFKRVNPFAKDLIKPCLAWTAYL AVTYVFIDL
Sbjct: 129 DFVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 171

[Close]

BLAST of Lcy10g011410 vs. NCBI nr
Match: XP_023540366.1 (translocator protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.9 bits (764), Expect = 2.7e-77
Identity = 148/163 (90.80%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 3   SRPESKYTKAKRALRSLAVSVAIPLSLTIAVIFLFGRSSRHFPNRNRPVWVAPLWFFHLS 62
           SRPESKYTKAKRALRSLAVSVAIPL+LTIAVIFLFGRSSRHFPNRNRP+WVAPLW  HLS
Sbjct: 64  SRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAPLWLLHLS 123

Query: 63  SIGSSFLIGLASWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVMRAVPLASLFCAL 122
           SI SSFLIGLA+WLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLV+RA+ LA LFC L
Sbjct: 124 SISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRALLLAFLFCVL 183

Query: 123 DFVTLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAVTYVFIDL 166
           D VTL+ACYRTFKRVNPFAKDLIKPCLAWTAYL AVTYVFIDL
Sbjct: 184 DLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 226

[Close]

BLAST of Lcy10g011410 vs. NCBI nr
Match: XP_022945022.1 (translocator protein homolog [Cucurbita moschata])

HSP 1 Score: 297.4 bits (760), Expect = 7.8e-77
Identity = 148/163 (90.80%), Postives = 153/163 (93.87%), Query Frame = 0


Query: 3   SRPESKYTKAKRALRSLAVSVAIPLSLTIAVIFLFGRSSRHFPNRNRPVWVAPLWFFHLS 62
           SRPESKYTKAKRALRSLAVSVAIPL+LTIAVIFLFGRSSRHFPNRNRP+WVAPLW  HLS
Sbjct: 64  SRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAPLWLLHLS 123

Query: 63  SIGSSFLIGLASWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVMRAVPLASLFCAL 122
           SI SSFLIGLA+WLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLV+RA  LA LFC L
Sbjct: 124 SISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARLLAFLFCVL 183

Query: 123 DFVTLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAVTYVFIDL 166
           D VTL+ACYRTFKRVNPFAKDLIKPCLAWTAYL AVTYVFIDL
Sbjct: 184 DLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 226

[Close]

BLAST of Lcy10g011410 vs. NCBI nr
Match: KAG6597521.1 (Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028979.1 Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 297.4 bits (760), Expect = 7.8e-77
Identity = 148/163 (90.80%), Postives = 153/163 (93.87%), Query Frame = 0


Query: 3   SRPESKYTKAKRALRSLAVSVAIPLSLTIAVIFLFGRSSRHFPNRNRPVWVAPLWFFHLS 62
           SRPESKYTKAKRALRSLAVSVAIPL+LTIAVIFLFGRSSRHFPNRNRP+WVAPLW  HLS
Sbjct: 9   SRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAPLWLLHLS 68

Query: 63  SIGSSFLIGLASWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVMRAVPLASLFCAL 122
           SI SSFLIGLA+WLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLV+RA  LA LFC L
Sbjct: 69  SISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARLLAFLFCVL 128

Query: 123 DFVTLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAVTYVFIDL 166
           D VTL+ACYRTFKRVNPFAKDLIKPCLAWTAYL AVTYVFIDL
Sbjct: 129 DLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 171

[Close]

BLAST of Lcy10g011410 vs. TAIR 10
Match: AT2G47770.1 (TSPO(outer membrane tryptophan-rich sensory protein)-related )

HSP 1 Score: 125.9 bits (315), Expect = 2.9e-29
Identity = 61/153 (39.87%), Postives = 88/153 (57.52%), Query Frame = 0


Query: 6   ESKYTKAKRALRSLAVSVAIPLSLTIAVIFLFGRSSRHFPNRNRPVWVAPLWFFHLSSIG 65
           + K   AKR L+SL V+VA P+ +T+   +  G S  +        W+ PLW  H + + 
Sbjct: 37  DQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLA 96

Query: 66  SSFLIGLASWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVMRAVPLASLFCALDFV 125
           SS L+GLA+WLVW DGGFH   NAL LY+A   L +VW+P+   + +             
Sbjct: 97  SSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSA 156

Query: 126 TLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAV 159
            LF CY+ F  ++P A +L+KPCLAW A+++AV
Sbjct: 157 ALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAV 189

The following BLAST results are available for this feature:

BLAST of Lcy10g011410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82245	4.1e-28	39.87	Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1	[more]
E2RDM9	6.4e-05	29.66	Translocator protein 2 OS=Canis lupus familiaris OX=9615 GN=TSPO2 PE=1 SV=1	[more]
Q5TGU0	9.2e-04	35.79	Translocator protein 2 OS=Homo sapiens OX=9606 GN=TSPO2 PE=1 SV=1	[more]

BLAST of Lcy10g011410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ICB9	2.6e-78	91.41	translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111474208 PE=3 SV...	[more]
A0A6J1FZS9	3.8e-77	90.80	translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111449384 PE=3 ...	[more]
A0A5D3CWC4	1.9e-76	87.73	Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S4DTF2	1.9e-76	87.73	translocator protein homolog OS=Cucumis melo OX=3656 GN=LOC107990392 PE=3 SV=1	[more]
A0A0A0L583	9.4e-76	87.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154290 PE=3 SV=1	[more]

BLAST of Lcy10g011410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878873.1	3.4e-80	92.64	translocator protein homolog [Benincasa hispida]	[more]
XP_022973726.1	5.4e-78	91.41	translocator protein homolog [Cucurbita maxima] >XP_022975172.1 translocator pro...	[more]
XP_023540366.1	2.7e-77	90.80	translocator protein homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022945022.1	7.8e-77	90.80	translocator protein homolog [Cucurbita moschata]	[more]
KAG6597521.1	7.8e-77	90.80	Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lcy10g011410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47770.1	2.9e-29	39.87	TSPO(outer membrane tryptophan-rich sensory protein)-related	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038330	TspO/MBR-related superfamily	GENE3D	1.20.1260.100	TspO/MBR protein	coord: 13..165 e-value: 1.6E-21 score: 78.5
IPR004307	TspO/MBR-related protein	PFAM	PF03073	TspO_MBR	coord: 22..161 e-value: 1.6E-19 score: 70.3
IPR004307	TspO/MBR-related protein	PIRSF	PIRSF005859	PBR	coord: 8..165 e-value: 6.7E-30 score: 101.6
IPR004307	TspO/MBR-related protein	PANTHER	PTHR10057	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR	coord: 2..164
IPR004307	TspO/MBR-related protein	CDD	cd15904	TSPO_MBR	coord: 19..163 e-value: 8.94759E-24 score: 88.708
None	No IPR available	PANTHER	PTHR10057:SF6	TSPO/MBR FAMILY PROTEIN	coord: 2..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g011410.1	Lcy10g011410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane