Lcy10g011180 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g011180
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	signal recognition particle 43 kDa protein, chloroplastic-like
Location	Chr10: 39342847 .. 39343113 (+)
RNA-Seq Expression	Lcy10g011180
Synteny	Lcy10g011180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGACTCGGGTCGGAGCCTTGCATCAGACTATTGGCCGAAGCCGGCGTGAATCTCGACCACCATGACAACAGCGGCGGGTTCACGGCTTTGCACATGGCAACCGGGTACGTAAAGCCTAGAACGGTGGAGTTACTCGGGCAATTAGGCGCGGATCCGGAGGTGGAAGACGAGAAGGGTCGGACGCCGTTGGATCTTGCGAGGGAGATTCTAAAAGCGACGTCGAGATTCAGTTCGCGAGGAGATTGGGGATGGAGAGAGTGA

mRNA sequence

ATGGCTGGACTCGGGTCGGAGCCTTGCATCAGACTATTGGCCGAAGCCGGCGTGAATCTCGACCACCATGACAACAGCGGCGGGTTCACGGCTTTGCACATGGCAACCGGGTACGTAAAGCCTAGAACGGTGGAGTTACTCGGGCAATTAGGCGCGGATCCGGAGGTGGAAGACGAGAAGGGTCGGACGCCGTTGGATCTTGCGAGGGAGATTCTAAAAGCGACGTCGAGATTCAGTTCGCGAGGAGATTGGGGATGGAGAGAGTGA

Coding sequence (CDS)

ATGGCTGGACTCGGGTCGGAGCCTTGCATCAGACTATTGGCCGAAGCCGGCGTGAATCTCGACCACCATGACAACAGCGGCGGGTTCACGGCTTTGCACATGGCAACCGGGTACGTAAAGCCTAGAACGGTGGAGTTACTCGGGCAATTAGGCGCGGATCCGGAGGTGGAAGACGAGAAGGGTCGGACGCCGTTGGATCTTGCGAGGGAGATTCTAAAAGCGACGTCGAGATTCAGTTCGCGAGGAGATTGGGGATGGAGAGAGTGA

Protein sequence

MAGLGSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEKGRTPLDLAREILKATSRFSSRGDWGWRE

Homology

[Close]

BLAST of Lcy10g011180 vs. ExPASy Swiss-Prot
Match: O22265 (Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CAO PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-23
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1   MAGLGSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEK 60
           +AGLGS+ C+RLLAEAG +LDH D  GG TALHMA GYV+P  VE L +LGAD EVEDE+
Sbjct: 167 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 226

Query: 61  GRTPLDLAREILKATSR 78
           G T L+LAREILK T +
Sbjct: 227 GLTALELAREILKTTPK 243

[Close]

BLAST of Lcy10g011180 vs. ExPASy Swiss-Prot
Match: Q8LSQ2 (Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0131900 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.2e-15
Identity = 38/77 (49.35%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 2   AGLGSEPCIRLLAEAGVNLDHHDNS-GGFTALHMATGYVKPRTVELLGQLGADPEVEDEK 61
           AGLGSE C+R LAEAG ++   + + GG T LH+A GY +P  V  L +LGA+PE  D +
Sbjct: 168 AGLGSEECVRALAEAGADVGRPERAGGGLTPLHIAVGYGRPAAVRALLELGAEPEAPDGQ 227

Query: 62  GRTPLDLAREILKATSR 78
           GRTPL+L +++L  T +
Sbjct: 228 GRTPLELVQDVLAKTPK 244

[Close]

BLAST of Lcy10g011180 vs. ExPASy Swiss-Prot
Match: Q9ULT8 (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens OX=9606 GN=HECTD1 PE=1 SV=3)

HSP 1 Score: 52.4 bits (124), Expect = 3.1e-06
Identity = 27/85 (31.76%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 2   AGLGSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEKG 61
           +  G++  +  L E G +++    S   ++LH A  + +P+  + L + GA+P++ DE G
Sbjct: 404 SAFGTQEMVEFLCERGADVNRGQRS---SSLHYAACFGRPQVAKTLLRHGANPDLRDEDG 463

Query: 62  RTPLDLARE--ILKATSRFSSRGDW 85
           +TPLD ARE    +  +   S GDW
Sbjct: 464 KTPLDKARERGHSEVVAILQSPGDW 485

[Close]

BLAST of Lcy10g011180 vs. ExPASy Swiss-Prot
Match: Q69ZR2 (E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus OX=10090 GN=Hectd1 PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 3.1e-06
Identity = 27/85 (31.76%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 2   AGLGSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEKG 61
           +  G++  +  L E G +++    S   ++LH A  + +P+  + L + GA+P++ DE G
Sbjct: 405 SAFGTQEMVEFLCERGADVNRGQRS---SSLHYAACFGRPQVAKTLLRHGANPDLRDEDG 464

Query: 62  RTPLDLARE--ILKATSRFSSRGDW 85
           +TPLD ARE    +  +   S GDW
Sbjct: 465 KTPLDKARERGHSEVVAILQSPGDW 486

[Close]

BLAST of Lcy10g011180 vs. ExPASy Swiss-Prot
Match: Q9VL06 (E3 ubiquitin-protein ligase Ufd4 OS=Drosophila melanogaster OX=7227 GN=Ufd4 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.4e-05
Identity = 27/88 (30.68%), Postives = 46/88 (52.27%), Query Frame = 0


Query: 2   AGLGSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEKG 61
           +  G+   +  L E G +++    S   ++LH A  + +P   ++L + GA P++ DE G
Sbjct: 431 SAFGTLEMVEYLCEKGADVNKGQRS---SSLHYAACFGRPAIAKILLKFGAYPDLRDEDG 490

Query: 62  RTPLDLAREIL-----KATSRFSSRGDW 85
           +TPLD ARE L     +  +   S G+W
Sbjct: 491 KTPLDKARERLDDGHREVAAILQSPGEW 515

[Close]

BLAST of Lcy10g011180 vs. ExPASy TrEMBL
Match: A0A6J1EP65 (signal recognition particle 43 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111435281 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.3e-27
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1   MAGLGSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEK 60
           +AGLGSEPCIR+LAEAG +LDH D SGGFTALHMA GYVKP TVELL +LGADPEV+D+K
Sbjct: 210 VAGLGSEPCIRILAEAGADLDHRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDK 269

Query: 61  GRTPLDLAREILKATSR 78
           GRTPL LAREI+KAT R
Sbjct: 270 GRTPLVLAREIVKATPR 286

[Close]

BLAST of Lcy10g011180 vs. ExPASy TrEMBL
Match: A0A6J1JM92 (signal recognition particle 43 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486468 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.3e-27
Identity = 61/77 (79.22%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1   MAGLGSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEK 60
           +AGLGSEPC+R+LAEAG +LDH D SGGFTALHMA GYVKP TVELL +LGADPEV+D+K
Sbjct: 203 VAGLGSEPCVRILAEAGADLDHRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDK 262

Query: 61  GRTPLDLAREILKATSR 78
           GRTPL LAREI+KAT R
Sbjct: 263 GRTPLVLAREIVKATPR 279

[Close]

BLAST of Lcy10g011180 vs. ExPASy TrEMBL
Match: A0A1S3BHX6 (signal recognition particle 43 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490246 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 9.5e-27
Identity = 60/77 (77.92%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1   MAGLGSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEK 60
           ++GLGS  C+R+LAEAGVNL+H DNSGGFTALHMA GYVKP TVELL +LGADPE+EDEK
Sbjct: 155 VSGLGSVECVRILAEAGVNLNHRDNSGGFTALHMAAGYVKPETVELLVELGADPEIEDEK 214

Query: 61  GRTPLDLAREILKATSR 78
           GRT L+LA+EILKAT R
Sbjct: 215 GRTALELAKEILKATPR 231

[Close]

BLAST of Lcy10g011180 vs. ExPASy TrEMBL
Match: A0A6J1I1V3 (signal recognition particle 43 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468257 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.1e-26
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1   MAGLGSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEK 60
           +AGLGSEPC+R+LAEAGVNLDH D  GGFTALHMA GYVKP TVELL  LGADPEVED K
Sbjct: 142 VAGLGSEPCVRMLAEAGVNLDHRDYCGGFTALHMAAGYVKPGTVELLVDLGADPEVEDNK 201

Query: 61  GRTPLDLAREILKATSR 78
           GRTPL LA+ ILKAT +
Sbjct: 202 GRTPLGLAKGILKATPK 218

[Close]

BLAST of Lcy10g011180 vs. ExPASy TrEMBL
Match: A0A0A0K634 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G018780 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.7e-26
Identity = 58/77 (75.32%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1   MAGLGSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEK 60
           ++GLGS  C+R+LA+AGVNL+H DNSGGFTALHMA GYVKP TVELL +LGADPE++DEK
Sbjct: 151 VSGLGSVECVRILADAGVNLNHRDNSGGFTALHMAAGYVKPETVELLVELGADPEIDDEK 210

Query: 61  GRTPLDLAREILKATSR 78
           GRT L+LA+EILKAT R
Sbjct: 211 GRTALELAKEILKATPR 227

[Close]

BLAST of Lcy10g011180 vs. NCBI nr
Match: XP_038888741.1 (signal recognition particle 43 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 1.6e-28
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1   MAGLGSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEK 60
           +AGLGS PC+R+LAEAGVNLDH DNSGGFTALH+A GYVKP TVELL +LGADPE+EDEK
Sbjct: 155 VAGLGSNPCVRMLAEAGVNLDHRDNSGGFTALHLAAGYVKPETVELLVELGADPEIEDEK 214

Query: 61  GRTPLDLAREILKATSR 78
           GRTPL LA+EILKAT R
Sbjct: 215 GRTPLVLAKEILKATPR 231

[Close]

BLAST of Lcy10g011180 vs. NCBI nr
Match: XP_023529738.1 (signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.1 bits (331), Expect = 2.3e-27
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1   MAGLGSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEK 60
           +AGLGSEPC+R+LAEAG NLDH D SGGFTALHMA GYVKP TVELL +LGADPEV+D+K
Sbjct: 156 VAGLGSEPCVRILAEAGANLDHRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDK 215

Query: 61  GRTPLDLAREILKATSR 78
           GRTPL LAREI+KAT R
Sbjct: 216 GRTPLVLAREIVKATPR 232

[Close]

BLAST of Lcy10g011180 vs. NCBI nr
Match: KAG6589032.1 (Signal recognition particle 43 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.6 bits (327), Expect = 6.8e-27
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1   MAGLGSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEK 60
           +AGLGSEPCIR+LAEAG +LDH D SGGFTALHMA GYVKP TVELL +LGADPEV+D+K
Sbjct: 154 VAGLGSEPCIRILAEAGADLDHRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDK 213

Query: 61  GRTPLDLAREILKATSR 78
           GRTPL LAREI+KAT R
Sbjct: 214 GRTPLVLAREIVKATPR 230

[Close]

BLAST of Lcy10g011180 vs. NCBI nr
Match: XP_022928488.1 (signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 130.6 bits (327), Expect = 6.8e-27
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1   MAGLGSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEK 60
           +AGLGSEPCIR+LAEAG +LDH D SGGFTALHMA GYVKP TVELL +LGADPEV+D+K
Sbjct: 210 VAGLGSEPCIRILAEAGADLDHRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDK 269

Query: 61  GRTPLDLAREILKATSR 78
           GRTPL LAREI+KAT R
Sbjct: 270 GRTPLVLAREIVKATPR 286

[Close]

BLAST of Lcy10g011180 vs. NCBI nr
Match: KAG7022747.1 (Signal recognition particle 43 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.6 bits (327), Expect = 6.8e-27
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1   MAGLGSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEK 60
           +AGLGSEPCIR+LAEAG +LDH D SGGFTALHMA GYVKP TVELL +LGADPEV+D+K
Sbjct: 159 VAGLGSEPCIRILAEAGADLDHRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDK 218

Query: 61  GRTPLDLAREILKATSR 78
           GRTPL LAREI+KAT R
Sbjct: 219 GRTPLVLAREIVKATPR 235

[Close]

BLAST of Lcy10g011180 vs. TAIR 10
Match: AT2G47450.1 (chloroplast signal recognition particle component (CAO) )

HSP 1 Score: 109.8 bits (273), Expect = 1.2e-24
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1   MAGLGSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEK 60
           +AGLGS+ C+RLLAEAG +LDH D  GG TALHMA GYV+P  VE L +LGAD EVEDE+
Sbjct: 167 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 226

Query: 61  GRTPLDLAREILKATSR 78
           G T L+LAREILK T +
Sbjct: 227 GLTALELAREILKTTPK 243

[Close]

BLAST of Lcy10g011180 vs. TAIR 10
Match: AT3G04710.1 (ankyrin repeat family protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05
Identity = 24/64 (37.50%), Postives = 35/64 (54.69%), Query Frame = 0


Query: 5   GSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEKGRTP 64
           GS  C+ LL +AG   +    +GG T LH+A        +  L + GADP  +DE+G  P
Sbjct: 198 GSLSCLELLVKAGAKANVF--AGGATPLHIAADIGNLELINCLLKAGADPNQKDEEGNRP 257

Query: 65  LDLA 69
           L++A
Sbjct: 258 LEVA 259

[Close]

BLAST of Lcy10g011180 vs. TAIR 10
Match: AT3G04710.3 (ankyrin repeat family protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05
Identity = 24/64 (37.50%), Postives = 35/64 (54.69%), Query Frame = 0


Query: 5   GSEPCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEKGRTP 64
           GS  C+ LL +AG   +    +GG T LH+A        +  L + GADP  +DE+G  P
Sbjct: 422 GSLSCLELLVKAGAKANVF--AGGATPLHIAADIGNLELINCLLKAGADPNQKDEEGNRP 481

Query: 65  LDLA 69
           L++A
Sbjct: 482 LEVA 483

[Close]

BLAST of Lcy10g011180 vs. TAIR 10
Match: AT3G57130.1 (Ankyrin repeat family protein / BTB/POZ domain-containing protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.7e-04
Identity = 28/78 (35.90%), Postives = 40/78 (51.28%), Query Frame = 0


Query: 6   SEPCIRLLAEAG-VNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEKGRTP 65
           S   ++ L E G  ++++     G TALH+A   V P  V +L    ADP V+   G TP
Sbjct: 289 SREVVKALLELGAADVNYPAGPTGKTALHIAAEMVSPDMVAVLLDHHADPNVQTVDGITP 348

Query: 66  LDLAREILKATSRFSSRG 83
           LD+ R +   TS F  +G
Sbjct: 349 LDILRTL---TSDFLFKG 363

[Close]

BLAST of Lcy10g011180 vs. TAIR 10
Match: AT3G03790.2 (ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein )

HSP 1 Score: 41.6 bits (96), Expect = 3.9e-04
Identity = 22/60 (36.67%), Postives = 31/60 (51.67%), Query Frame = 0


Query: 8   PCIRLLAEAGVNLDHHDNSGGFTALHMATGYVKPRTVELLGQLGADPEVEDEKGRTPLDL 67
           P +R L  AG + D  D   G+++LH A  +       +L   GA   +ED K RTP+DL
Sbjct: 76  PIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLIDSGASFTLEDIKLRTPVDL 135

The following BLAST results are available for this feature:

BLAST of Lcy10g011180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22265	1.6e-23	67.53	Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thalian...	[more]
Q8LSQ2	6.2e-15	49.35	Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sati...	[more]
Q9ULT8	3.1e-06	31.76	E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens OX=9606 GN=HECTD1 PE=1 SV=3	[more]
Q69ZR2	3.1e-06	31.76	E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus OX=10090 GN=Hectd1 PE=1 SV=2	[more]
Q9VL06	3.4e-05	30.68	E3 ubiquitin-protein ligase Ufd4 OS=Drosophila melanogaster OX=7227 GN=Ufd4 PE=2...	[more]

BLAST of Lcy10g011180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EP65	3.3e-27	80.52	signal recognition particle 43 kDa protein, chloroplastic-like OS=Cucurbita mosc...	[more]
A0A6J1JM92	4.3e-27	79.22	signal recognition particle 43 kDa protein, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A1S3BHX6	9.5e-27	77.92	signal recognition particle 43 kDa protein, chloroplastic OS=Cucumis melo OX=365...	[more]
A0A6J1I1V3	2.1e-26	79.22	signal recognition particle 43 kDa protein, chloroplastic-like OS=Cucurbita maxi...	[more]
A0A0A0K634	4.7e-26	75.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G018780 PE=4 SV=1	[more]

BLAST of Lcy10g011180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888741.1	1.6e-28	81.82	signal recognition particle 43 kDa protein, chloroplastic [Benincasa hispida]	[more]
XP_023529738.1	2.3e-27	80.52	signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita pepo s...	[more]
KAG6589032.1	6.8e-27	80.52	Signal recognition particle 43 kDa protein, chloroplastic, partial [Cucurbita ar...	[more]
XP_022928488.1	6.8e-27	80.52	signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita moscha...	[more]
KAG7022747.1	6.8e-27	80.52	Signal recognition particle 43 kDa protein, chloroplastic, partial [Cucurbita ar...	[more]

BLAST of Lcy10g011180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47450.1	1.2e-24	67.53	chloroplast signal recognition particle component (CAO)	[more]
AT3G04710.1	2.0e-05	37.50	ankyrin repeat family protein	[more]
AT3G04710.3	2.0e-05	37.50	ankyrin repeat family protein	[more]
AT3G57130.1	1.7e-04	35.90	Ankyrin repeat family protein / BTB/POZ domain-containing protein	[more]
AT3G03790.2	3.9e-04	36.67	ankyrin repeat family protein / regulator of chromosome condensation (RCC1) fami...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 1..81 e-value: 1.7E-19 score: 71.7
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 4..70
None	No IPR available	PFAM	PF13857	Ank_5	coord: 13..68 e-value: 2.0E-7 score: 31.1
None	No IPR available	PANTHER	PTHR24128	HOMEOBOX PROTEIN WARIAI	coord: 2..77
IPR030300	Signal recognition particle 43kDa protein	PANTHER	PTHR24128:SF43	SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC	coord: 2..77
IPR002110	Ankyrin repeat	PROSITE	PS50088	ANK_REPEAT	coord: 27..59 score: 9.80474

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g011180.1	Lcy10g011180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070208	protein heterotrimerization
biological_process	GO:0045038	protein import into chloroplast thylakoid membrane
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0080085	signal recognition particle, chloroplast targeting
molecular_function	GO:0097718	disordered domain specific binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0030674	protein-macromolecule adaptor activity
molecular_function	GO:0005515	protein binding