Lcy10g010520 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g010520
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr10: 38415208 .. 38415998 (-)
RNA-Seq ExpressionLcy10g010520
SyntenyLcy10g010520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTCATTAATAGCCTCTGCCTCTCTCACAACTTCCGACCAACAAACCGCCGGAAAATATCAACTTCCGATCACCGGAATCGTTCTTCCATTCCACTGTTCATCCGTTTTCGAGCTCAAAAGAAGGATACCATTAGAACGGCCGATGCACATTGCATAGACTTCTTATAACCTCTGAATCTTCTCGTTGGAAGCTTGAAACAAGGTAGTTGATTATCTGCATCAGATCTCCACGGCTCTGCTTCGCTCTGTTAATCGATTTCTGGCGCCTGATAGTGTTTCTTGAAGTGGAATCTGTAGCTTTAATAGCTTTAATTTTTATTTTGCTTGATATATGATGTTCAGATACTCGGATTCGGTTTAGCTTTACCTCATTTCCTGTAAGCACTTGAATTTGTTGTTAAAGTCTTTCGCTCTGTGAATCAATTGTTGGCGCCTGATAGTGTTGCTTGAAGTGGAATCTGTAGCTTCAATAGCTTTGATTCTTACTTTGCTTGATATATGATGTTCAGATACTCGGATTCGGTTTAGCTTTACCTCATTTCCTGTATGCACTTGGATTCGTAGTCAAAATCCTCAGCGATTCTTCGATTGCACTAGCCGTAAGTTCTAAGTGCTTCTGCTGAAATTGGCTTTTCACAAGCCAGAGTTTCAATATGCATGTGAGTTAAGAGCTACTGTTTCTCAGTTCGAGCTTTTTTGTCTATTGCTTAGTAGCTACAATTAATTGACATCAAAAAACAAAAATGAGATCTTATATTCCAGCTTTTCTTAAGGCTTCGAGTATAA

mRNA sequence

ATGGTCTCATTAATAGCCTCTGCCTCTCTCACAACTTCCGACCAACAAACCGCCGGAAAATATCAACTTCCGATCACCGGAATCGTTCTTCCATTCCACTGTTCATCCGTTTTCGAGCTCAAAAGAAGGATACCATTAGAACGGCCGATGCACATTGCATAGACTTCTTATAACCTCTGAATCTTCTCGTTGGAAGCTTGAAACAAGGTAGTTGATTATCTGCATCAGATCTCCACGGCTCTGCTTCGCTCTGTTAATCGATTTCTGGCGCCTGATAGTGTTTCTTGAAGTGGAATCTGTAGCTTTAATAGCTTTAATTTTTATTTTGCTTGATATATGATGTTCAGATACTCGGATTCGGTTTAGCTTTACCTCATTTCCTGTAAGCACTTGAATTTGTTGTTAAAGTCTTTCGCTCTGTGAATCAATTGTTGGCGCCTGATAGTGTTGCTTGAAGTGGAATCTGTAGCTTCAATAGCTTTGATTCTTACTTTGCTTGATATATGATGTTCAGATACTCGGATTCGGTTTAGCTTTACCTCATTTCCTGTATGCACTTGGATTCGTAGTCAAAATCCTCAGCGATTCTTCGATTGCACTAGCCGTAAGTTCTAAGTGCTTCTGCTGAAATTGGCTTTTCACAAGCCAGAGTTTCAATATGCATGTGAGTTAAGAGCTACTGTTTCTCAGTTCGAGCTTTTTTGTCTATTGCTTAGTAGCTACAATTAATTGACATCAAAAAACAAAAATGAGATCTTATATTCCAGCTTTTCTTAAGGCTTCGAGTATAA

Coding sequence (CDS)

ATGGTCTCATTAATAGCCTCTGCCTCTCTCACAACTTCCGACCAACAAACCGCCGGAAAATATCAACTTCCGATCACCGGAATCGTTCTTCCATTCCACTGTTCATCCGTTTTCGAGCTCAAAAGAAGGATACCATTAGAACGGCCGATGCACATTGCATAG

Protein sequence

MVSLIASASLTTSDQQTAGKYQLPITGIVLPFHCSSVFELKRRIPLERPMHIA
Homology
[Close]
BLAST of Lcy10g010520 vs. ExPASy TrEMBL
Match: A0A0A0L5Y7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G169480 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-05
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 0 

Query: 15 QQTAGKYQLPITGIVLPFHCSSVFELKRRIPLERPMHIA 54
          Q TAGK QLPITGI+L  HCSS FEL+RRI  E  +HIA
Sbjct: 18 QLTAGKRQLPITGIILLLHCSSAFELRRRIQFEWLLHIA 56

[Close]
BLAST of Lcy10g010520 vs. NCBI nr
Match: KGN57188.1 (hypothetical protein Csa_011268 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 5.7e-05
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 0 

Query: 15 QQTAGKYQLPITGIVLPFHCSSVFELKRRIPLERPMHIA 54
          Q TAGK QLPITGI+L  HCSS FEL+RRI  E  +HIA
Sbjct: 18 QLTAGKRQLPITGIILLLHCSSAFELRRRIQFEWLLHIA 56

The following BLAST results are available for this feature:
BLAST of Lcy10g010520 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy10g010520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5Y72.8e-0569.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G169480 PE=4 SV=1[more]
BLAST of Lcy10g010520 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57188.15.7e-0569.23hypothetical protein Csa_011268 [Cucumis sativus][more]
BLAST of Lcy10g010520 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g010520.1Lcy10g010520.1mRNA