Lcy10g010270 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g010270
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr10: 38083194 .. 38083677 (+)
RNA-Seq Expression	Lcy10g010270
Synteny	Lcy10g010270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTCGAAAGGCTTGCACCATCTTCAACCAGAACCCGAGAGACCACAAAAAGTCTCACTCTGACTCAGGTGAGAACCTCTCGAGTTTTGTTTTTAATTTTCAACAAGGATATGTTTGAAAGTGATTTTGAAATATTGGTTCAAAATTAATCACTCTTTTCGTGTTTAAAATCATTCTGAAACATGTTTTTCATCATTACAAAGAACGTTGGCTTTGTTTTTTTAGAAAAATCTCTTTTGTTAACAACGTCAATTTAAACATAACTTGAAAGTCAATATCTTGTTTTAATTGGGATATATTTCACAGAGCAAGAGAAGCGAGTGGACGTGAGAGATCTGCAAGGAGAGGTGATGGCGTGTGGGTACGAAGACGTGCACGTGATGTGGTCCATTTTAGACAAGGCCAACTCAACTGCCGCCACCACTGCCACCGCCTGTAATGTGTCGTCTTAA

mRNA sequence

ATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTCGAAAGGCTTGCACCATCTTCAACCAGAACCCGAGAGACCACAAAAAGTCTCACTCTGACTCAGAGCAAGAGAAGCGAGTGGACGTGAGAGATCTGCAAGGAGAGGTGATGGCGTGTGGGTACGAAGACGTGCACGTGATGTGGTCCATTTTAGACAAGGCCAACTCAACTGCCGCCACCACTGCCACCGCCTGTAATGTGTCGTCTTAA

Coding sequence (CDS)

ATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTCGAAAGGCTTGCACCATCTTCAACCAGAACCCGAGAGACCACAAAAAGTCTCACTCTGACTCAGAGCAAGAGAAGCGAGTGGACGTGAGAGATCTGCAAGGAGAGGTGATGGCGTGTGGGTACGAAGACGTGCACGTGATGTGGTCCATTTTAGACAAGGCCAACTCAACTGCCGCCACCACTGCCACCGCCTGTAATGTGTCGTCTTAA

Protein sequence

MASWKKTIISPFRKACTIFNQNPRDHKKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVMWSILDKANSTAATTATACNVSS

Homology

[Close]

BLAST of Lcy10g010270 vs. ExPASy TrEMBL
Match: A0A6J1CC51 (uncharacterized protein LOC111009357 OS=Momordica charantia OX=3673 GN=LOC111009357 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.3e-33
Identity = 76/81 (93.83%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1   MASWKKTIISPFRKACTIFNQNPRDHKKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVMW 60
           MASWKKTIISPFRKACTIFNQ PRD KKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVMW
Sbjct: 58  MASWKKTIISPFRKACTIFNQQPRDPKKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVMW 117

Query: 61  SILDKANSTAATTATACNVSS 82
           SILDKANS AA TA ACNVSS
Sbjct: 118 SILDKANSGAAATA-ACNVSS 137

[Close]

BLAST of Lcy10g010270 vs. ExPASy TrEMBL
Match: A0A5A7U9W0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold60158G00010 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.9e-32
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHKKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQNPRD KKSHSDSEQEKRVDVR+LQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILDKANSTAATTATA-CNVSS 82
          SILD   ++AATTATA CNVSS
Sbjct: 61 SILDHKANSAATTATATCNVSS 82

[Close]

BLAST of Lcy10g010270 vs. ExPASy TrEMBL
Match: A0A1S3AXS6 (uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483930 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.9e-32
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHKKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQNPRD KKSHSDSEQEKRVDVR+LQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILDKANSTAATTATA-CNVSS 82
          SILD   ++AATTATA CNVSS
Sbjct: 61 SILDHKANSAATTATATCNVSS 82

[Close]

BLAST of Lcy10g010270 vs. ExPASy TrEMBL
Match: A0A6J1IUX8 (uncharacterized protein LOC111479526 OS=Cucurbita maxima OX=3661 GN=LOC111479526 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 9.1e-32
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHKKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQ+PRD KKS SDSEQEKRVDVR+LQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQHPRDPKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILDKANSTAATTATACNVSS 82
          SILDKANST  T ATACNVSS
Sbjct: 61 SILDKANST-TTAATACNVSS 80

[Close]

BLAST of Lcy10g010270 vs. ExPASy TrEMBL
Match: A0A0A0L5H1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171230 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 75/83 (90.36%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDH-KKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQNPRDH KKSHSDSEQEKRVDVR+LQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILDKANSTAATTATA-CNVSS 82
          WSILD   ++AATTATA CNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 83

[Close]

BLAST of Lcy10g010270 vs. NCBI nr
Match: XP_022138108.1 (uncharacterized protein LOC111009357 [Momordica charantia])

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 76/81 (93.83%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1   MASWKKTIISPFRKACTIFNQNPRDHKKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVMW 60
           MASWKKTIISPFRKACTIFNQ PRD KKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVMW
Sbjct: 58  MASWKKTIISPFRKACTIFNQQPRDPKKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVMW 117

Query: 61  SILDKANSTAATTATACNVSS 82
           SILDKANS AA TA ACNVSS
Sbjct: 118 SILDKANSGAAATA-ACNVSS 137

[Close]

BLAST of Lcy10g010270 vs. NCBI nr
Match: XP_038898749.1 (uncharacterized protein LOC120086267 [Benincasa hispida])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 72/81 (88.89%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHKKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQN RD KKSHSDSEQEKRVDVR+LQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQNTRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILDKANSTAATTATACNVSS 82
          SILDKANS A  T   CNVSS
Sbjct: 61 SILDKANSIATATTITCNVSS 81

[Close]

BLAST of Lcy10g010270 vs. NCBI nr
Match: XP_008439007.1 (PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo] >KAA0052144.1 uncharacterized protein E6C27_scaffold1589G00140 [Cucumis melo var. makuwa] >TYK30595.1 uncharacterized protein E5676_scaffold60158G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHKKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQNPRD KKSHSDSEQEKRVDVR+LQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILDKANSTAATTATA-CNVSS 82
          SILD   ++AATTATA CNVSS
Sbjct: 61 SILDHKANSAATTATATCNVSS 82

[Close]

BLAST of Lcy10g010270 vs. NCBI nr
Match: XP_022980000.1 (uncharacterized protein LOC111479526 [Cucurbita maxima] >XP_023527753.1 uncharacterized protein LOC111790878 [Cucurbita pepo subsp. pepo] >KAG6582137.1 hypothetical protein SDJN03_22139, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145.6 bits (366), Expect = 1.9e-31
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHKKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQ+PRD KKS SDSEQEKRVDVR+LQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQHPRDPKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILDKANSTAATTATACNVSS 82
          SILDKANST  T ATACNVSS
Sbjct: 61 SILDKANST-TTAATACNVSS 80

[Close]

BLAST of Lcy10g010270 vs. NCBI nr
Match: XP_004147637.1 (uncharacterized protein LOC101206709 [Cucumis sativus] >KGN57215.1 hypothetical protein Csa_010169 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 2.4e-31
Identity = 75/83 (90.36%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDH-KKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQNPRDH KKSHSDSEQEKRVDVR+LQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILDKANSTAATTATA-CNVSS 82
          WSILD   ++AATTATA CNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 83

[Close]

BLAST of Lcy10g010270 vs. TAIR 10
Match: AT1G48330.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-17
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFN--QNPRDHKKSHSDSEQEKRVDVRDLQGEVMACGYEDVHV 60
          MASWKKTI +PF+KA T FN  Q    H  + +  E EKR  V++LQG+VMACGYEDV V
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQTNRHANAKAREEHEKRT-VQELQGDVMACGYEDVLV 60

Query: 61 MWSILDKANST 70
          MWSILDK+NS+
Sbjct: 61 MWSILDKSNSS 70

[Close]

BLAST of Lcy10g010270 vs. TAIR 10
Match: AT3G17580.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48330.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 1.6e-17
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHKK-------SHSDSEQEKRVDVRDLQGEVMACGY 60
          MASWKKTI +PF+KA T FNQ  +  KK       + +  E EKR+ V++LQGEVMACGY
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQSPKKGCRGRMDAQAREEHEKRM-VQELQGEVMACGY 60

Query: 61 EDVHVMWSILDKANST 70
          +DV VMWSILDK+NS+
Sbjct: 61 DDVLVMWSILDKSNSS 75

The following BLAST results are available for this feature:

BLAST of Lcy10g010270 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g010270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CC51	6.3e-33	93.83	uncharacterized protein LOC111009357 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A5A7U9W0	6.9e-32	90.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AXS6	6.9e-32	90.24	uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1IUX8	9.1e-32	91.36	uncharacterized protein LOC111479526 OS=Cucurbita maxima OX=3661 GN=LOC111479526...	[more]
A0A0A0L5H1	1.2e-31	90.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171230 PE=4 SV=1	[more]

BLAST of Lcy10g010270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138108.1	1.3e-32	93.83	uncharacterized protein LOC111009357 [Momordica charantia]	[more]
XP_038898749.1	1.1e-31	88.89	uncharacterized protein LOC120086267 [Benincasa hispida]	[more]
XP_008439007.1	1.4e-31	90.24	PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo] >KAA00...	[more]
XP_022980000.1	1.9e-31	91.36	uncharacterized protein LOC111479526 [Cucurbita maxima] >XP_023527753.1 uncharac...	[more]
XP_004147637.1	2.4e-31	90.36	uncharacterized protein LOC101206709 [Cucumis sativus] >KGN57215.1 hypothetical ...	[more]

BLAST of Lcy10g010270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48330.1	1.3e-17	61.97	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G17580.1	1.6e-17	59.21	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..40
None	No IPR available	PANTHER	PTHR33181:SF43	SUBFAMILY NOT NAMED	coord: 1..72
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g010270.1	Lcy10g010270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane