Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACAACGCTTCATGCCTTATGGACCTGTAAGAAGGTAAAAAAGCACTGGGCCTGTTGGAGCCCAGTGCAACCTCTCCTTAGTACACATTACGCTGATGCCCTTGATCTGTTTTGTAGGTGTCAGAAGGTTCTTTCTACTGATGATTTGGCAACCTTCATGGCAGTCCTTTGGTCTATGTGGAACAGTAGAAATAAAGATGTTTTTCAGGACAACATGAACTATGTCCAACAGGAATACGACCCTATAGAATGGGCATCTGCTTACATATCAGACTACAAGGAGGCCCAAGCTAAGCATCATGGAGTCAATCGAGATCAAGAGCGGTTGAGAGATGCTGATGATTCATGTCTTACTGCGTGGATTCCGCCGCTCCAGAACCATTTCAAGTTGAATGTGGATGCAACTTTAGCTAATGGAGATATGGGATCAGGCATGATCATCAGAAATTCGAATGGAGAACCAATGGCAACCGCAGAGTATTTCAGGCGAACGAGCTGTTCAGTAGAGTGGGCAGAAGCAAAGGCTCTTGTAGACGACATTCAGTTAGCTGTTGATTCAGGATTATCACCAGTCTGGGCAGAGACGGATTCCAAAATTGTATAG
mRNA sequence
ATGAAACAACGCTTCATGCCTTATGGACCTGTAAGAAGGTGTCAGAAGGTTCTTTCTACTGATGATTTGGCAACCTTCATGGCAGTCCTTTGGTCTATGTGGAACAGTAGAAATAAAGATGTTTTTCAGGACAACATGAACTATGTCCAACAGGAATACGACCCTATAGAATGGGCATCTGCTTACATATCAGACTACAAGGAGGCCCAAGCTAAGCATCATGGAGTCAATCGAGATCAAGAGCGGTTGAGAGATGCTGATGATTCATGTCTTACTGCGTGGATTCCGCCGCTCCAGAACCATTTCAAGTTGAATGTGGATGCAACTTTAGCTAATGGAGATATGGGATCAGGCATGATCATCAGAAATTCGAATGGAGAACCAATGGCAACCGCAGAGTATTTCAGGCGAACGAGCTGTTCAGTAGAGTGGGCAGAAGCAAAGGCTCTTGTAGACGACATTCAGTTAGCTGTTGATTCAGGATTATCACCAGTCTGGGCAGAGACGGATTCCAAAATTGTATAG
Coding sequence (CDS)
ATGAAACAACGCTTCATGCCTTATGGACCTGTAAGAAGGTGTCAGAAGGTTCTTTCTACTGATGATTTGGCAACCTTCATGGCAGTCCTTTGGTCTATGTGGAACAGTAGAAATAAAGATGTTTTTCAGGACAACATGAACTATGTCCAACAGGAATACGACCCTATAGAATGGGCATCTGCTTACATATCAGACTACAAGGAGGCCCAAGCTAAGCATCATGGAGTCAATCGAGATCAAGAGCGGTTGAGAGATGCTGATGATTCATGTCTTACTGCGTGGATTCCGCCGCTCCAGAACCATTTCAAGTTGAATGTGGATGCAACTTTAGCTAATGGAGATATGGGATCAGGCATGATCATCAGAAATTCGAATGGAGAACCAATGGCAACCGCAGAGTATTTCAGGCGAACGAGCTGTTCAGTAGAGTGGGCAGAAGCAAAGGCTCTTGTAGACGACATTCAGTTAGCTGTTGATTCAGGATTATCACCAGTCTGGGCAGAGACGGATTCCAAAATTGTATAG
Protein sequence
MKQRFMPYGPVRRCQKVLSTDDLATFMAVLWSMWNSRNKDVFQDNMNYVQQEYDPIEWASAYISDYKEAQAKHHGVNRDQERLRDADDSCLTAWIPPLQNHFKLNVDATLANGDMGSGMIIRNSNGEPMATAEYFRRTSCSVEWAEAKALVDDIQLAVDSGLSPVWAETDSKIV
Homology
BLAST of Lcy10g009660 vs. ExPASy TrEMBL
Match:
A0A6J1CDQ4 (uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010533 PE=4 SV=1)
HSP 1 Score: 89.0 bits (219), Expect = 2.2e-14
Identity = 55/169 (32.54%), Postives = 89/169 (52.66%), Query Frame = 0
Query: 11 VRRCQKVLSTDDLATFMAVLWSMWNSRNKDVFQDNMNYVQQEYDPIEWASAYISDYKEAQ 70
+R + +L+ D + LWS+WN RN VF N V+ + D W S YI+ +K
Sbjct: 5 LRDWRDMLNWKDFEELVVFLWSLWNRRNAFVF--NKRRVEDD-DLAGWVSTYIATFKATN 64
Query: 71 AKHHGVNRD-----QERLRDADDSCLTAWIPPLQNHFKLNVDATLANGDMGSGM---IIR 130
H N+D Q+ + T W P + FKL DA+ ++ D +G+ IIR
Sbjct: 65 TNHATANQDVSQSFQQSSQIHQAQNHTIWCPAEEGVFKLKTDASFSSIDFNAGLGVIIIR 124
Query: 131 NSNGEPMATAEYFRRTSCSVEWAEAKALVDDIQLAVDSGLSPVWAETDS 172
+ G+ +A+A + SV+ AEA A V+ +++A+++G+SP+ ETDS
Sbjct: 125 DHRGQVLASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDS 170
BLAST of Lcy10g009660 vs. ExPASy TrEMBL
Match:
A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)
HSP 1 Score: 82.4 bits (202), Expect = 2.0e-12
Identity = 51/164 (31.10%), Postives = 82/164 (50.00%), Query Frame = 0
Query: 4 RFMPYGPVRRCQKVLSTDDLATFMAVLWSMWNSRNKDVFQDNMNYV-QQEYDPIEWASAY 63
+ P+ +R + LS D V+W +WN RN F D+ V + + +EWA+ Y
Sbjct: 908 KLSPFLILRESHESLSKADFEELCVVIWGLWNQRNARAFNDSTKTVFKIGMELVEWANKY 967
Query: 64 ISDYKEAQAKHHGVNRDQERLRDADDSCLTAWIPPLQNHFKLNVDATLANGDM--GSGMI 123
+++EA++ N R+ + + W PP + +K+N DA+ D G G+I
Sbjct: 968 AMEFREAKS-----NPITGRVTNTAE---ILWQPPDEGIYKINTDASFLASDQHAGLGII 1027
Query: 124 IRNSNGEPMATAEYFRRTSCSVEWAEAKALVDDIQLAVDSGLSP 165
I N G+ MA A + SV+ AEA A V+ +QLA + G+ P
Sbjct: 1028 IHNDRGQVMAAATKYLENIQSVDMAEAIAAVEGLQLASEIGMHP 1063
BLAST of Lcy10g009660 vs. ExPASy TrEMBL
Match:
A0A2N9H1N4 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33433 PE=4 SV=1)
HSP 1 Score: 80.5 bits (197), Expect = 7.7e-12
Identity = 53/166 (31.93%), Postives = 80/166 (48.19%), Query Frame = 0
Query: 11 VRRCQKVLSTDDLATFMAVLWSMWNSRNKDVFQDNMNYVQQEYDPIEWASAYISDYKEAQ 70
+ +C +LST +L F + WS+W RN+ Q + V + ++ A +S+++EAQ
Sbjct: 1338 LHKCFSLLSTSELQLFSMICWSIWYRRNRLRLQQS---VDNDLQLVQRARDSMSEFQEAQ 1397
Query: 71 AKHHGVNRDQERLRDADDSCLTAWIPPLQNHFKLNVDATLANGD--MGSGMIIRNSNGEP 130
+R+Q+ + S W PP Q +K+N D + + G G+IIRN GE
Sbjct: 1398 ------DREQQLPQQPSSSATVKWNPPAQGRYKVNYDGAIFSDSNAAGIGVIIRNHQGEV 1457
Query: 131 MATAEYFRRTSCSVEWAEAKALVDDIQLAVDSGLSPVWAETDSKIV 175
M + SVE EA A IQ A D G + + E DSK V
Sbjct: 1458 MGSLSQRFPFPHSVEAVEASAARSAIQFARDLGFTKIDLEGDSKTV 1494
BLAST of Lcy10g009660 vs. ExPASy TrEMBL
Match:
A0A6J5XPA9 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS35751 PE=4 SV=1)
HSP 1 Score: 77.0 bits (188), Expect = 8.5e-11
Identity = 53/149 (35.57%), Postives = 80/149 (53.69%), Query Frame = 0
Query: 29 VLWSMWNSRNKDVFQDNMNYVQQEYDP---IEWASAYISDYKEAQAKHHGVNRDQERLRD 88
++WS+W +R K +F+ QQ +P I+ A +D+ + VNRD ++ +
Sbjct: 94 LMWSIWKARYKAIFE------QQLPNPGLVIQGAKESWTDFLNSAPTLGAVNRDVDKESE 153
Query: 89 ADDSCLTAWIPPLQNHFKLNVDAT--LANGDMGSGMIIRNSNGEPMATAEYFRRTSCSVE 148
S T W PL + KLNVDA +G G G+IIRN +GE + + TS SV
Sbjct: 154 VVRS--TLWQAPLTPYLKLNVDAAWFSNSGHTGIGIIIRNHHGE-FKSGKVCWTTSMSVV 213
Query: 149 WAEAKALVDDIQLAVDSGLSPVWAETDSK 173
AEA+A+++ + A D G S +W E+DSK
Sbjct: 214 DAEARAVIEGLSFAADQGYSHIWVESDSK 233
BLAST of Lcy10g009660 vs. ExPASy TrEMBL
Match:
A0A6J1C467 (uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007775 PE=4 SV=1)
HSP 1 Score: 77.0 bits (188), Expect = 8.5e-11
Identity = 48/156 (30.77%), Postives = 80/156 (51.28%), Query Frame = 0
Query: 21 DDLATFMAVLWSMWNSRNKDVFQDNMNYVQQEYDPIEWASAYISDYKEAQAKHHGVNRDQ 80
++L+ F LW++WN+RN+ +F + ++ + ++W + Y+ Y+ AQ
Sbjct: 10 EELSVF---LWAIWNARNQSMFTNGHGFLL--VNMVDWVADYLQVYQSAQE-----GPSL 69
Query: 81 ERLRDADDSCLTAWIPPLQNHFKLNVDATLANGDMGSGM--IIRNSNGEPMATAEYFRRT 140
L D ++AW PPL FK+NVDA G+ +G+ +IR+S + +A F
Sbjct: 70 PLLLDGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITH 129
Query: 141 SCSVEWAEAKALVDDIQLAVDSGLSPVWAETDSKIV 175
V AE A + + LA+++GL P ETDS V
Sbjct: 130 VSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQV 155
BLAST of Lcy10g009660 vs. NCBI nr
Match:
XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])
HSP 1 Score: 89.0 bits (219), Expect = 4.5e-14
Identity = 55/169 (32.54%), Postives = 89/169 (52.66%), Query Frame = 0
Query: 11 VRRCQKVLSTDDLATFMAVLWSMWNSRNKDVFQDNMNYVQQEYDPIEWASAYISDYKEAQ 70
+R + +L+ D + LWS+WN RN VF N V+ + D W S YI+ +K
Sbjct: 5 LRDWRDMLNWKDFEELVVFLWSLWNRRNAFVF--NKRRVEDD-DLAGWVSTYIATFKATN 64
Query: 71 AKHHGVNRD-----QERLRDADDSCLTAWIPPLQNHFKLNVDATLANGDMGSGM---IIR 130
H N+D Q+ + T W P + FKL DA+ ++ D +G+ IIR
Sbjct: 65 TNHATANQDVSQSFQQSSQIHQAQNHTIWCPAEEGVFKLKTDASFSSIDFNAGLGVIIIR 124
Query: 131 NSNGEPMATAEYFRRTSCSVEWAEAKALVDDIQLAVDSGLSPVWAETDS 172
+ G+ +A+A + SV+ AEA A V+ +++A+++G+SP+ ETDS
Sbjct: 125 DHRGQVLASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDS 170
BLAST of Lcy10g009660 vs. NCBI nr
Match:
XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])
HSP 1 Score: 82.4 bits (202), Expect = 4.2e-12
Identity = 51/164 (31.10%), Postives = 82/164 (50.00%), Query Frame = 0
Query: 4 RFMPYGPVRRCQKVLSTDDLATFMAVLWSMWNSRNKDVFQDNMNYV-QQEYDPIEWASAY 63
+ P+ +R + LS D V+W +WN RN F D+ V + + +EWA+ Y
Sbjct: 908 KLSPFLILRESHESLSKADFEELCVVIWGLWNQRNARAFNDSTKTVFKIGMELVEWANKY 967
Query: 64 ISDYKEAQAKHHGVNRDQERLRDADDSCLTAWIPPLQNHFKLNVDATLANGDM--GSGMI 123
+++EA++ N R+ + + W PP + +K+N DA+ D G G+I
Sbjct: 968 AMEFREAKS-----NPITGRVTNTAE---ILWQPPDEGIYKINTDASFLASDQHAGLGII 1027
Query: 124 IRNSNGEPMATAEYFRRTSCSVEWAEAKALVDDIQLAVDSGLSP 165
I N G+ MA A + SV+ AEA A V+ +QLA + G+ P
Sbjct: 1028 IHNDRGQVMAAATKYLENIQSVDMAEAIAAVEGLQLASEIGMHP 1063
BLAST of Lcy10g009660 vs. NCBI nr
Match:
XP_021724891.1 (uncharacterized protein LOC110692199 [Chenopodium quinoa])
HSP 1 Score: 77.8 bits (190), Expect = 1.0e-10
Identity = 52/163 (31.90%), Postives = 82/163 (50.31%), Query Frame = 0
Query: 12 RRCQKVLSTDDLATFMAVLWSMWNSRNKDVFQDNMNYVQQEYDPIEWA---SAYISDYKE 71
+R + S D+ TF A+ W+MW SRNK +F+++ +DPI A S Y+SD++
Sbjct: 63 KRVTEHYSHHDVYTFSALAWAMWTSRNKALFENS------PHDPILLATGFSKYVSDFQV 122
Query: 72 AQAKHHGVNRDQERLRDADDSCLTAWIPPLQNHFKLNVDATLANGDMGSGMIIRNSNGEP 131
AK G R + + + W P K+NVDA + +G G++ RNS+G+
Sbjct: 123 YSAKVFGGRRGNGGISN------STWKKPPAGTLKINVDAATFDDAVGLGVVARNSHGDI 182
Query: 132 MATAEYFRRTSCSVEWAEAKALVDDIQLAVDSGLSPVWAETDS 172
+ T R AEA A+ ++LA+ G VW E+D+
Sbjct: 183 VFTGARRWRGRWDSCIAEAAAIHFGVELAIRFGYRDVWCESDA 213
BLAST of Lcy10g009660 vs. NCBI nr
Match:
XP_022135942.1 (uncharacterized protein LOC111007775 [Momordica charantia])
HSP 1 Score: 77.0 bits (188), Expect = 1.8e-10
Identity = 48/156 (30.77%), Postives = 80/156 (51.28%), Query Frame = 0
Query: 21 DDLATFMAVLWSMWNSRNKDVFQDNMNYVQQEYDPIEWASAYISDYKEAQAKHHGVNRDQ 80
++L+ F LW++WN+RN+ +F + ++ + ++W + Y+ Y+ AQ
Sbjct: 10 EELSVF---LWAIWNARNQSMFTNGHGFLL--VNMVDWVADYLQVYQSAQE-----GPSL 69
Query: 81 ERLRDADDSCLTAWIPPLQNHFKLNVDATLANGDMGSGM--IIRNSNGEPMATAEYFRRT 140
L D ++AW PPL FK+NVDA G+ +G+ +IR+S + +A F
Sbjct: 70 PLLLDGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITH 129
Query: 141 SCSVEWAEAKALVDDIQLAVDSGLSPVWAETDSKIV 175
V AE A + + LA+++GL P ETDS V
Sbjct: 130 VSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQV 155
BLAST of Lcy10g009660 vs. NCBI nr
Match:
CAB4312998.1 (unnamed protein product [Prunus armeniaca])
HSP 1 Score: 77.0 bits (188), Expect = 1.8e-10
Identity = 53/149 (35.57%), Postives = 80/149 (53.69%), Query Frame = 0
Query: 29 VLWSMWNSRNKDVFQDNMNYVQQEYDP---IEWASAYISDYKEAQAKHHGVNRDQERLRD 88
++WS+W +R K +F+ QQ +P I+ A +D+ + VNRD ++ +
Sbjct: 94 LMWSIWKARYKAIFE------QQLPNPGLVIQGAKESWTDFLNSAPTLGAVNRDVDKESE 153
Query: 89 ADDSCLTAWIPPLQNHFKLNVDAT--LANGDMGSGMIIRNSNGEPMATAEYFRRTSCSVE 148
S T W PL + KLNVDA +G G G+IIRN +GE + + TS SV
Sbjct: 154 VVRS--TLWQAPLTPYLKLNVDAAWFSNSGHTGIGIIIRNHHGE-FKSGKVCWTTSMSVV 213
Query: 149 WAEAKALVDDIQLAVDSGLSPVWAETDSK 173
AEA+A+++ + A D G S +W E+DSK
Sbjct: 214 DAEARAVIEGLSFAADQGYSHIWVESDSK 233
BLAST of Lcy10g009660 vs. TAIR 10
Match:
AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )
HSP 1 Score: 49.3 bits (116), Expect = 3.7e-06
Identity = 47/158 (29.75%), Postives = 68/158 (43.04%), Query Frame = 0
Query: 21 DDLATFMA--VLWSMWNSRNKDVFQDNMNYVQQEYDPIEWASAYISDYKEAQAKHHGVNR 80
D + FM ++W +W S N VF Q +E A ++D KE + N
Sbjct: 37 DRVTRFMPFWLMWRIWKSGNDLVFNHTRTKFQ---TTVEMA---LNDTKE-WLDNTMTNE 96
Query: 81 DQERLRDADDSCLTAWIPPLQNHFKLNVDAT--LANGDMGSGMIIRNSNGEPMATAEYFR 140
Q R+AD S T W PP ++ K N DA+ N G G I+RNS G +
Sbjct: 97 QQNGNRNADPSRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKF 156
Query: 141 RTSCSVEWAEAKALVDDIQLAVDSGLSPVWAETDSKIV 175
+ + E AE L+ IQ + G V E D++ +
Sbjct: 157 QGRMTTEEAECSTLIWAIQASYGFGHKKVIFEGDNQTI 187
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CDQ4 | 2.2e-14 | 32.54 | uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010... | [more] |
A0A6J1DAR4 | 2.0e-12 | 31.10 | uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018... | [more] |
A0A2N9H1N4 | 7.7e-12 | 31.93 | RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33433 ... | [more] |
A0A6J5XPA9 | 8.5e-11 | 35.57 | Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS35751 PE=... | [more] |
A0A6J1C467 | 8.5e-11 | 30.77 | uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007... | [more] |
Match Name | E-value | Identity | Description | |
AT5G65005.1 | 3.7e-06 | 29.75 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | [more] |