Lcy10g008930 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g008930
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionGAST1 protein-like protein 5
LocationChr10: 35309983 .. 35310903 (+)
RNA-Seq ExpressionLcy10g008930
SyntenyLcy10g008930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCATCAGTGAGGCTCCAACGCCACAGCCCCAGACCAGTGGCAATTCTACCACTCCCATGGTACCAAGATCTTTTATTAATTATCATTTTTTTTTCATATTCAATTTCAAAAGCTAATGTTAAACAATTTTCTTTTTCTCTTTTCCAAATTTCAGCATGGAGTCACTGAAGGCAGCCTTCAACCTCAAGGTAAAAAAATAGTATGAATTTATGATTAAAAAAATTGATAAATTTTCCACATTCTCTTGATAACTATTTGTTTTAGTGTGACATGCCTACTAATTTAAACACATTTAAAAAAAAAAATTGTTTTTTCTTTAAAACTCTATTCATTAAAGTTATTTTAATTCAGAGATGTGATGTGTTTGTTACCATTTCTTAAAAGTGATTTTAATCCCAACTTTATTTGGTTAGCACAAAGGTATTGTACAAAGGTTTAAGACGAGAAGCTTTAAATTCAATGGCAAATTGTAATTTTTGCATATTTTGAGTTTTTTTTTTTTTTTGAGGGGAATGTAAAGTGATTTCCTTGTCTATAATCACTTTAAACTTGTTTTTTTTGACAATATATGAGGTGGGAGGATTCGAACCACAAATCTTGTGATCATCAGTACAACTTTGTGTCAGTTGAACTATGCTCTTGTTGGCTATAATCACTTTAAACTAGATCAGTGGAAAAGTAAATAGAAATTAATTGAGTTGAGGACGTTGTTGCAGAGTGTGGACCTCGATGCACAGAGAGATGTTCAAAGACAGCGTTCAAGAAGCCATGCATGTTCTTCTGCCAAAAGTGTTGTGCCAAGTGCTTGTGTGTGCCTTATGGGACTTATGGCAACAAGCAATCTTGTCCCTGCTATAATCAATGGAAGACTAAAAGAGGAGGCCCCAAATGCCCTTGAAATTCCCACCTCCTCTCTTTAA

mRNA sequence

GCCATCAGTGAGGCTCCAACGCCACAGCCCCAGACCAGTGGCAATTCTACCACTCCCATGCATGGAGTCACTGAAGGCAGCCTTCAACCTCAAGAGTGTGGACCTCGATGCACAGAGAGATGTTCAAAGACAGCGTTCAAGAAGCCATGCATGTTCTTCTGCCAAAAGTGTTGTGCCAAGTGCTTGTGTGTGCCTTATGGGACTTATGGCAACAAGCAATCTTGTCCCTGCTATAATCAATGGAAGACTAAAAGAGGAGGCCCCAAATGCCCTTGAAATTCCCACCTCCTCTCTTTAA

Coding sequence (CDS)

GCCATCAGTGAGGCTCCAACGCCACAGCCCCAGACCAGTGGCAATTCTACCACTCCCATGCATGGAGTCACTGAAGGCAGCCTTCAACCTCAAGAGTGTGGACCTCGATGCACAGAGAGATGTTCAAAGACAGCGTTCAAGAAGCCATGCATGTTCTTCTGCCAAAAGTGTTGTGCCAAGTGCTTGTGTGTGCCTTATGGGACTTATGGCAACAAGCAATCTTGTCCCTGCTATAATCAATGGAAGACTAAAAGAGGAGGCCCCAAATGCCCTTGAAATTCCCACCTCCTCTCTTTAA

Protein sequence

PSVRLQRHSPRPVAILPLPCMESLKAAFNLKSVDLDAQRDVQRQRSRSHACSSAKSVVPSACVCLMGLMATSNLVPAIINGRLKEEAPNALEIPTSSL
Homology
BLAST of Lcy10g008930 vs. ExPASy TrEMBL
Match: A0A5A7USS3 (GAST1 protein-like protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00480 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.3e-20
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 0

Query: 21 MESLKAAFNLKSVDLDAQRDVQRQRSRSHACSSAKSVVPSACVCLMGLMATSNLVPAIIN 80
          ME LKAAFNLK+V LDAQ DVQRQ SRSHACS  KSVVP+ACV LMGLMAT+ LV A IN
Sbjct: 1  MELLKAAFNLKNVGLDAQGDVQRQHSRSHACSFVKSVVPNACVFLMGLMATNKLVLATIN 60

Query: 81 GRLKEEAPNALE 93
          GRL+EEAPNAL+
Sbjct: 61 GRLREEAPNALD 72

BLAST of Lcy10g008930 vs. ExPASy TrEMBL
Match: I3SI96 (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13
Identity = 50/93 (53.76%), Postives = 60/93 (64.52%), Query Frame = 0

Query: 1  PSVRLQRHS-PRPVAILPLPCMESLKAAFNLKSVDLDAQRDVQRQRSRSHACSSAKSVVP 60
          P +RLQ H+  + VA++  P M SLKA FN K+VD DA  D Q   +RSHA S A SVVP
Sbjct: 7  PPLRLQLHNLAKAVALINFPIMASLKAVFNHKNVDHDALIDAQTHNTRSHAYSFATSVVP 66

Query: 61 SACVCLMGLMATSNLVPAIINGRLKEEAPNALE 93
          S CVCL+ +MATS    A   GR K E PNAL+
Sbjct: 67 SVCVCLLAIMATSRFALATTTGRPKGEDPNALK 99

BLAST of Lcy10g008930 vs. ExPASy TrEMBL
Match: A0A6N2K5W8 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS12695 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-13
Identity = 49/71 (69.01%), Postives = 51/71 (71.83%), Query Frame = 0

Query: 24 LKAAFNLKSVDLDAQRDVQRQRSRSHACSSAKSVVPSACVCLMGLMATSNLVPAIINGRL 83
          LKAA  LKSVDL A  D  RQ SRSHACSSAKS V SACVC   LM TSNLVPA   GR 
Sbjct: 24 LKAALILKSVDLAALIDAPRQPSRSHACSSAKSAVQSACVCPQELMETSNLVPATTIGRP 83

Query: 84 KEEAPNALEIP 95
          +EE P+ALE P
Sbjct: 84 REEVPSALEDP 94

BLAST of Lcy10g008930 vs. ExPASy TrEMBL
Match: A0A2N9IL55 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54258 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 48/72 (66.67%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 21 MESLKAAFNLKSVDLDAQRDVQRQRSRSHACSSAKSVVPSACVCLMGLMATSNLVPAIIN 80
          M S KAAFNLKSV   A +D Q+QRSRSHACSSAKSVV +ACV L  LM T N   A I 
Sbjct: 1  MVSPKAAFNLKSVLHAAPKDAQKQRSRSHACSSAKSVVLNACVFLRELMGTRNSALATIT 60

Query: 81 GRLKEEAPNALE 93
          GR +EE PNALE
Sbjct: 61 GRPREEDPNALE 72

BLAST of Lcy10g008930 vs. ExPASy TrEMBL
Match: A0A2H5P9F1 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_115810 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.5e-12
Identity = 48/93 (51.61%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 3  VRLQRHS--PRPVAILPLPCMESLKAAFNLKSVDLDAQRDVQRQRSRSHACSSAKSVVPS 62
          +RLQ  S   + V    +P     K  FNLKS D DA++D QR  + SHACSS KS VPS
Sbjct: 6  LRLQLRSLQSQVVETATIPRTVPPKEVFNLKSADHDARQDAQRHNTGSHACSSVKSAVPS 65

Query: 63 ACVCLMGLMATSNLVPAIINGRLKEEAPNALEI 94
          ACVCL+  M TSN   A I G+L+EE  NALE+
Sbjct: 66 ACVCLLDFMETSNPALATITGKLREEDRNALEL 98

BLAST of Lcy10g008930 vs. NCBI nr
Match: KAA0057216.1 (GAST1 protein-like protein 5 [Cucumis melo var. makuwa] >TYK18745.1 GAST1 protein-like protein 5 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 6.8e-20
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 0

Query: 21 MESLKAAFNLKSVDLDAQRDVQRQRSRSHACSSAKSVVPSACVCLMGLMATSNLVPAIIN 80
          ME LKAAFNLK+V LDAQ DVQRQ SRSHACS  KSVVP+ACV LMGLMAT+ LV A IN
Sbjct: 1  MELLKAAFNLKNVGLDAQGDVQRQHSRSHACSFVKSVVPNACVFLMGLMATNKLVLATIN 60

Query: 81 GRLKEEAPNALE 93
          GRL+EEAPNAL+
Sbjct: 61 GRLREEAPNALD 72

BLAST of Lcy10g008930 vs. NCBI nr
Match: AFK39988.1 (unknown [Medicago truncatula])

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-13
Identity = 50/93 (53.76%), Postives = 60/93 (64.52%), Query Frame = 0

Query: 1  PSVRLQRHS-PRPVAILPLPCMESLKAAFNLKSVDLDAQRDVQRQRSRSHACSSAKSVVP 60
          P +RLQ H+  + VA++  P M SLKA FN K+VD DA  D Q   +RSHA S A SVVP
Sbjct: 7  PPLRLQLHNLAKAVALINFPIMASLKAVFNHKNVDHDALIDAQTHNTRSHAYSFATSVVP 66

Query: 61 SACVCLMGLMATSNLVPAIINGRLKEEAPNALE 93
          S CVCL+ +MATS    A   GR K E PNAL+
Sbjct: 67 SVCVCLLAIMATSRFALATTTGRPKGEDPNALK 99

BLAST of Lcy10g008930 vs. NCBI nr
Match: KAF5474215.1 (hypothetical protein F2P56_006130 [Juglans regia])

HSP 1 Score: 84.0 bits (206), Expect = 8.1e-13
Identity = 51/90 (56.67%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 3  VRLQRHSPRPVAILPLPCMESLKAAFNLKSVDLDAQRDVQRQRSRSHACSSAKSVVPSAC 62
          +RLQ HSP  +A      M S KAAFN K+V   A +D Q+QRSRSHACSS KS VPSAC
Sbjct: 5  LRLQHHSPNKMA--NFQRMVSPKAAFNHKNVVHVAHKDAQKQRSRSHACSSVKSAVPSAC 64

Query: 63 VCLMGLMATSNLVPAIINGRLKEEAPNALE 93
          V L+ LM T N   A   GR +EE PNAL+
Sbjct: 65 VSLLELMGTRNSALATTIGRPREEDPNALD 92

BLAST of Lcy10g008930 vs. NCBI nr
Match: GAY48987.1 (hypothetical protein CUMW_115810 [Citrus unshiu])

HSP 1 Score: 81.3 bits (199), Expect = 5.3e-12
Identity = 48/93 (51.61%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 3  VRLQRHS--PRPVAILPLPCMESLKAAFNLKSVDLDAQRDVQRQRSRSHACSSAKSVVPS 62
          +RLQ  S   + V    +P     K  FNLKS D DA++D QR  + SHACSS KS VPS
Sbjct: 6  LRLQLRSLQSQVVETATIPRTVPPKEVFNLKSADHDARQDAQRHNTGSHACSSVKSAVPS 65

Query: 63 ACVCLMGLMATSNLVPAIINGRLKEEAPNALEI 94
          ACVCL+  M TSN   A I G+L+EE  NALE+
Sbjct: 66 ACVCLLDFMETSNPALATITGKLREEDRNALEL 98

BLAST of Lcy10g008930 vs. NCBI nr
Match: EOY32792.1 (Uncharacterized protein TCM_040807 [Theobroma cacao])

HSP 1 Score: 77.8 bits (190), Expect = 5.8e-11
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 0

Query: 20 CMESLKAAFNLKSVDLDAQRDVQRQRSRSHACSSAKSVVPSACVCLMGLMATSNLVPAII 79
          CM   +AAF LK+V  DA  D   Q +RSHACSS +SVVPSACVCL+  M T+N+  A  
Sbjct: 5  CMVPPRAAFVLKNVVRDALPDALLQHTRSHACSSVRSVVPSACVCLLAHMETNNIAHATT 64

Query: 80 NGRLKEEAPNALEI 94
           GR +EE PNAL +
Sbjct: 65 TGRPREEGPNALRL 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7USS33.3e-2079.17GAST1 protein-like protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
I3SI961.0e-1353.76Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1[more]
A0A6N2K5W82.3e-1369.01Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS12695 PE=4 SV=1[more]
A0A2N9IL551.9e-1266.67Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54258 PE=4 SV=1[more]
A0A2H5P9F12.5e-1251.61Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_115810 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0057216.16.8e-2079.17GAST1 protein-like protein 5 [Cucumis melo var. makuwa] >TYK18745.1 GAST1 protei... [more]
AFK39988.12.1e-1353.76unknown [Medicago truncatula][more]
KAF5474215.18.1e-1356.67hypothetical protein F2P56_006130 [Juglans regia][more]
GAY48987.15.3e-1251.61hypothetical protein CUMW_115810 [Citrus unshiu][more]
EOY32792.15.8e-1155.41Uncharacterized protein TCM_040807 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g008930.1Lcy10g008930.1mRNA