Lcy10g008880 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g008880
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionActin-related protein 2/3 complex subunit 5
LocationChr10: 35192256 .. 35199018 (+)
RNA-Seq ExpressionLcy10g008880
SyntenyLcy10g008880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCCACGAGTAGCTCGACGACGCGATTGTAGCTCTGTCGCTTCCTTCTTCGGCAACCGCAGGCAAGTCAGCTTTCCCCTCCGTTGCCATCTCCTCCGGCGAGCTGCACCGCGATTTTCTTCTCTGGGGATTCTTGCACGAAGGCACTGCATTTCGAAAACCTCCAGCTTCGATACCCACGCGTCGGTAGCAGTGGCTACGCGTGTTCAACGCTGTTCCAGCCTCCGGTCAGGTTCGATCTGCGAGTTCCGGCGTGGTTCTTCGTCCCTTCAACGATTCGGTAAGGTTCGACTTAAACCCACGCTATTTTTGCAAGTTTCAACATATATCCATTTGGTTTTGGACCTTGAAATCCCTTTAGATCGTGACCCATATTCTATCGACTTGAAGTTTTGATTACCCACTCCTTTGCAGCTTCCAACGATTTGGTTTAAGCTTCTTCGGACATCAATCAATGAGCTTTTGGACTCGAATCTAGTGTTCGACAATTACCCACAAGCTGAACAACGTTGATTCATATTGCCCAAAGCCCAATAGCTCTTGTTTGGCGATCTCGGACTCTGACAAGCATCAACCAGCATTAGTTCGAGCTCGTTTTGGGTAGTTCAGTAAGTTTCAGCAACCTTTCAAACTCATTCATAGCGTTTTGCAGTTTGATAGATTGATCCCTAATGCTTAGAAACTCTCCGTTTGTAGATTTGAGCTCCATCAAATACTTTTCAACGAAGGTCCAAGTCTCTTTCAGTGAGTTTGAGGCATTCAATTGGAGTAATTTAGAGTTGTCTCTAACCCTTGGCTATACTTTCAGTTGTAGTTTGGAATCAATTCAAAACACCTACGAACACTTCTAAGCAAGGATTCGAGTCCTTTGGTGAATTTTATTAGGTAAGCCACTCTTTAGTTCCATTCGAACTTGTTTAAGGTGTTTTAAAATAGTTTAAATGCTTTCAATATCAGTTGAAGTGTTTTAGATAAGCTTTTAATCCTTTGAAGTCTCCTTTCGTGCAGTTCCAAATCAAGTTGAACTCACTCGAACACGTTACAGCAAGCTTTGAGTCATTTTGGGTGAGTTTCAGGTGGTAAACTTCATCTAAGACCTTTTCGATCGCCTTGTTAGTGCTTTAGATCATTCTCGTACTCTTAGTAGCTCTTGGTTGTAGTTTCAGGCTAATTTGGGGTGTCCAAGCTAGCTATCTAAAGTTGTGTTTGGGTAAGAACACTCCTCCTAAACACCTCTTTGGCGTTGATAAAGGTTTGGAGTTGAGTTAGCTTTGAAACCTTTCCTCCCTTATTTCAGGAGCTCGTTATGTTCGCTTAGGGGCGTTTTAGCAATTAGTAAGTGGAATTCTACTTGTTGGGTCTTTTTGCTTGTGCTAGCATGCTGTGTGCTTTACTTGTTTGGTTTTATCATATACTGTATAGATATGTATGTGTTATGTGTTCGTGACGAGTTTTGAATACGTTGAGCTGTTGTGTTGAGCTTATATGGTGAAACTGTTGTGCTAAGAATGTTGTTTCGTTGTGATTGATTGAAAAGCGTTAATGTGTTGTTCATTTGATGTGTTTTATGACTTAATGCATGGTTTAGAAAGCATGTTTGGTATGTGCATTCTGGGTTGCATGTCATTGGCATAAAACATGGTTTAGAAGCATGATGAGTAAGATTCATGCATTCTAGTGAGATTGTGAGGTCAGTGGACCTTGTGTGTTGTAAAGGAAAGTTAGGTGAACACCAGGTGCTTCGGGTAAAAATGGTCAGAGGGGTGGTATGTCACCAATGGATTAAGAGAAGCATCGGGTGCCTTGGGTAATATGGTCAAGGGGCGATATGATGAGTCTAGAAAGAGAGTATTGAGCGTCGAGAAGGGCCAATACGTTGTGAAGTGTGCCTTGGGTAATATGGCCAAGGGACAATGCATAGTACGATTATTAAGTGATAGCCACATTGTGACGATGTCCTCCCGATTCCCGTAACGGTTTTTTCTCTACCCCAAATCGATCGGGTCCATTCAAAATCGGCTTAGTGGTTTGGTTTTCTATGATCACAAACCGATTCATGGGTTCAAACCGATACCAAACCCAATCGAGCTTCACCGATTGCCAAACACACTGTCTTTTTCTTTTTTGAAACTCCAAAGAATCGTGATTTCCTTTTTGTTTATAGATAAATCGACGACATCATGGACAGATTGCACTGATTTACGTTGAATTTCATTCATACAACTGTTGTATTATTGAATTGTATCGGTACAATCAGTTTTCGGTTAAGTTCGCGAAAATCCTACTGAAGATAGGGTGATAGCACAAGGCGAAAATGGCGACTACCGATGAATTTGTGGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAGAGCTTACTTAAACAGTAATCAATACTCTACCTACTCTTTGATTATAGGATTTAAATTTATTCAGCTCCATCCCCTAACTTACTGAAAATGCCCCAATTTGTCATTTTTTGCTTCGTTAAGGTCTAAACCAATCGAAGCTCTTAAAACTGCACTTGAAGGTTCCCCTCCAAATACCCGAGATGAGCGCTGCAAGGTATCCTTTCTTTCTTTTCTTCTCTCTTTTTTACTGCCTATGATCAATTTGGTGATTTTTATTATTAGTATGATTTAATTTGTGGGTAATCCTACAAATTTTAAGGGAAATTACTGGGAAAAATCCCTGTTTTTCAGCTATCATTAATTCTAATTTTATTCTTTTCCTACATTTTCTCAATGATGAGGCAAATTAGAATTGCTGGATGCTGATATAACTGTTGGAAATAGTTTGTTGTATTTGTATGCAGCTATTCAAAATGAATAGGCTTGTTGTTTCTTTCATGTTTATGTTTTGTCGGTCTGCTTGACCTGGGAGGATGAGTAAATCTAATATGATTATTTGTACTTCTCCAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCCTTGGATCCGGAGTACTATGATATTCTAATGAAGTGAGTTTATGTTATTTAACTGCTAAAATGTCAATTCTTATTGCTTCTACTTACTTCAGCAAGAGTCTAAAGTTGGTCATTCTACTAATTATATATATTTTTTCACTTTTTCCTTTAATTAAATTCCAAGTTTAGTTTCTTAGATTATGATTTTGCTATGAATTTTATATTCAAGTTGTGGGTCTGATCCTACTATGAGTTATGCTAACGAACATTCTGTTTTTGTTTCAAACTCATCAAATTTCTACAGCTAGATGTGTCCATGTCGATGCGGCATGTGTTAGTCTTTAGTTACATGGAAGATTGGTTGGCTGATGAATTTATTTTTGTCGCAAGGAGTCTTTGTAAAAGTGGAAATCTTCGTAACCATTTAGCTAGAAATATCTCATCACATTTTCTGAAGCTAGCAAGTCACATCCAACCTTTCTCCCAATAGCCCTTCCTTCTTTTTCCCAAATGTTGCTAATCTTTTCGGGATTCCAAACACCAAGAAGAGATAAGCGAGGATGCTTGACAACACTGATTAGGCAAATGTCAATCCTCCCCTTTGGAACAACAGGACTGTTTTCACGTGGATCTAATGACAGGGTTTCAAAAGCCAGTGGCCTTTATTGGCCTCCAAGCATAGGCCGCACGTGAATCATTCATGGGGAAGAAGTGGTATTTTGAGCCTATTTGCCTGTAGATCTACTACTTCTCAGTTTATGTTGATCCCTCCCAATTCAGTCTTCTCCCAAATGATCATTAAACCTTAGGTTTACTTTTCTTTTCTTTATTATTTTTTTTTGTAAAAGATAAGAAACTTCTTTTTTTTTTTTTTGGATAAATAAGAAACAAAATTTGTTGATGTATGAAATTACAAAACGTAGGGAGAGGAGAAAGGAAGTTATAAGAAAATCTGCAAGTAGTAAAAATCACTCTCTCAATGAAGAATCAAAAGGGAGGTTTTCTCTTCTGAGTATACGTTTGTTCCTCTTGAGTCGAAAAAGAAAAAAAGAAAACAATTCATGAGAACTCATAACACTTGCTTTTTTTCTTTTTAAAAAGGATTCACCAAGAGAGAAAATTAGAAACCCCCCTTAATATTTTGAAGGAATAGCTAGAAACCAGCCAAGAGAACTAAACGAGAAAGCCTGCATTTCAAGCATGGTTGCAATGAGGAATAAGACGATCTTTGTTTTCTTCTTACAAGCACTTGGCGTACCAACTTGGTGAAGGGGAGGATTAGGGTTTCAAGCTTGGACTTTTATCTTGGGTACTAATACCACCATGGAGAAGCTCTCACATCATCCAGGAGAGTGGGGAAACTTTGTGGGAGTCATTGAGACATTTCATAGTGAAAGTTCTGAGACCAGAAACCATCCCTATTTTCCGAAGAGAAACCATTTAGAAGATCTTAAAACTAGCACCATGTTTACCTCCAAAGGGTGGTTCTTTCAGTAGAGTTTCTCCGAAGCCACTTGGCCATGAATGTGATATTTCTTCCCTAGAGATTACTAAGGCCAAGCTCTCCACGATGAAGAGGATGCTTACCTTTTTCCAAATGACAGATGTATGATCCTCCTTCAGAATCATTAAGCATGTGTTTGGAATTCTTTCCTGAAAAGACTTTTCAATGTGTTTTCATCCCTGAATTCTTTCCAAGTCCTGAAAAGACTTATCAATGTGTTTGGAAACTTTAGCATGAACCAAAAAAATCGACAAAATAAGTTGAGAGGTATGAAAAGGGAGTATTTGTCAAGTTGAGAAAATTCTAGGGTATTTGGAGTTTTGTTGAAGGAGAAAAAACTCTTTGGGAGATGGCTTTCTCTAACAAATATAGGATTGAAGCTCATTGGTGGAAAAGTGAAGTTCCATAGAAAATCAAATTCTTCCTGTGGCCTTGCTTCTAGGGGTTTAAACACACAAAAAAGACTATAGGTGACGAATCCAAATTAAACACACAAAAAAGACTATAGGTGACGAATCCAAATTAGGCTCTTTCTTCCATGGATTGTGGCTTGGGACTTCTTGATGGAAAAAGTTATTCTTCCACCGTCAGTTTTCTACATGCTTAATTATTCAGCCTTTTCAACGTGTCCTTATTCCTTTCCAAGGAACTCGAAGATTGGTTATATGAAGTGTTCTTCAATCGGTGGTTGAAAGGTAAAGCTACTAAAGCTTAAGACATCCTTGGAAATGCACCTTTAAAGGTTTCCTGAGGCTTCTTTGGTTAGTAAGAAATCAAGAGTTTTTGAAGACTATTTTTTTTTTTTTTAAAATAGTTTTTGTGTCCATGTAATTCTACGATTGTATGTTTGACTGGCTTACACAAATCTCTGTTTGATAACCTTGTTTATTTTATCAACCTAGATTGGAACTTCGGAAGGTACTCATGTAATAGTTGTCTTTGGTAGGGGTTTCATCTACCCTCCTCTAGGTTGTATTCTTTTCGTGTTTTGAATATATTGTTTCTTATACTTTTTTGTTTAAGAAAAATTCTTGAAAAATTTTCAATGATAGGAGGATTTTTCAGAAACTTTGAGATCTCAGGGTACCATTTAGTGGTAGCACTAGACAAGAAATTAACCGACTCACTACCTTGCAGCCAAAAAGAGTAAATCATATCTTGAATTTCAGAAATAGGTTGTGTCGATACCTTTCATAGTTTTAGAGGATGCGTGTTTAGGTCAGAAGTTTCTTCTAAGACTTAGAGAATATTGAATAAATCGCCCACCTTCTCAATATTCATTGCTGAAAATGGATTCAACATATTAGAGATGATATATCATCCTTTCCAGCTCGAAAGCCATCTATATTAAACCAGTGATTAAGCCTCTAGGAAGTACCATCATCATGAAGCAATCAGATACTAAAATGAATGGGAAGGGGAGAAAAGATTTCTAGGAAGTACCACCATCCTTTCCAGCTCGAAAGCCATCTATATAAAACCAGTGATTAAGCCTCTAGGAAGTACCACCATCATGAAGCAATCAGATACTAAAATGAATTGGAAGGGGAGAAAAGATTTCCATGTCTCACTCCTCTCAACACAAGGGTTTTCTTTCTATGCTTGCTGCTAGTATGATGGAATAATTATCATCCAAAACGAGCATGAATTTGCCTCCTTCGACAAGTACGAAAACAACTTCAAGATAGTGTCAAGAAAGTTACACTAATCAAGCGTTCATGGGATTTTGGAAGAACTTTTGGATCCACTGTTTGAGGACATGATGTTCGTGGTGGCAAACTGGTTTTGTTTTGTTTTTTTTTTAATACGCCACATCCAACTTTTATTGGACCTCTGTGCTGTTTTCTTGTTGCTTCTTGCCAAACCTTGAGCATTTATGTGCTACCTACAGGTACTTGTACAGAGGCTTGTCAACTGGTGATCGTCCCACTTGTGATCAGTGTCTCAGGATACATGAAAAATTGACAGAAAGGGCTGGCTTAGGCTGCATTCTTCGTTCTCTTGCAGATATTAAGAATACAGTTTGATTTTTCTTGGGGAACACTGAGCAACTTTTTGGCTGATATTGAAAATATTATTATTTTCTCACAGATATATGTCATGCTAGAGCTGAAATGTACTCAAACTATCTAATTTTGACTCGTGTAAATTGCTTTTCAGATTGTGATTGTGTCAAGCAGAGTAGGCTTCAACATCTGTTACATGAATTGATAAGCAAAAAAAATAGGTACTGAATATAATTAAAATTGGTGACATTGGAAAGAA

mRNA sequence

TTCCCACGAGTAGCTCGACGACGCGATTGTAGCTCTGTCGCTTCCTTCTTCGGCAACCGCAGGCAAGTCAGCTTTCCCCTCCGTTGCCATCTCCTCCGGCGAGCTGCACCGCGATTTTCTTCTCTGGGGATTCTTGCACGAAGGCACTGCATTTCGAAAACCTCCAGCTTCGATACCCACGCGTCGGTAGCAGTGGCTACGCGTGTTCAACGCTGTTCCAGCCTCCGGTCAGGTTCGATCTGCGAGTTCCGGCGTGGTTCTTCGTCCCTTCAACGATTCGCTTCCAACGATTTGGTTTAAGCTTCTTCGGACATCAATCAATGAGCTTTTGGACTCGAATCTAGTGTTCGACAATTACCCACAAGCTGAACAACGTTGATTCATATTGCCCAAAGCCCAATAGCTCTTGTTTGGCGATCTCGGACTCTGACAAGCATCAACCAGCATTAGTTCGAGCTCGTTTTGGGTAGTTCAATTTGAGCTCCATCAAATACTTTTCAACGAAGTTGTAGTTTGGAATCAATTCAAAACACCTACGAACACTTCTAAGCAAGGATTCGAGTCCTTTGGTGAATTTTATTAGTTCCAAATCAAGTTGAACTCACTCGAACACGTTACAGCAAGCTTTGAGTCATTTTGGTTTCAGGCTAATTTGGGGTGTCCAAGCTAGCTATCTAAAGTTGTGTTTGGGAGCTCGTTATGTTCGCTTAGGGGCGTTTTAGCAATTATTTTCGGTTAAGTTCGCGAAAATCCTACTGAAGATAGGGTGATAGCACAAGGCGAAAATGGCGACTACCGATGAATTTGTGGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAGAGCTTACTTAAACAGTCTAAACCAATCGAAGCTCTTAAAACTGCACTTGAAGGTTCCCCTCCAAATACCCGAGATGAGCGCTGCAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCCTTGGATCCGGAGTACTATGATATTCTAATGAAGTACTTGTACAGAGGCTTGTCAACTGGTGATCGTCCCACTTGTGATCAGTGTCTCAGGATACATGAAAAATTGACAGAAAGGGCTGGCTTAGGCTGCATTCTTCGTTCTCTTGCAGATATTAAGAATACAGTTTGATTTTTCTTGGGGAACACTGAGCAACTTTTTGGCTGATATTGAAAATATTATTATTTTCTCACAGATATATGTCATGCTAGAGCTGAAATGTACTCAAACTATCTAATTTTGACTCGTGTAAATTGCTTTTCAGATTGTGATTGTGTCAAGCAGAGTAGGCTTCAACATCTGTTACATGAATTGATAAGCAAAAAAAATAGGTACTGAATATAATTAAAATTGGTGACATTGGAAAGAA

Coding sequence (CDS)

ATGGCGACTACCGATGAATTTGTGGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAGAGCTTACTTAAACAGTCTAAACCAATCGAAGCTCTTAAAACTGCACTTGAAGGTTCCCCTCCAAATACCCGAGATGAGCGCTGCAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCCTTGGATCCGGAGTACTATGATATTCTAATGAAGTACTTGTACAGAGGCTTGTCAACTGGTGATCGTCCCACTTGTGATCAGTGTCTCAGGATACATGAAAAATTGACAGAAAGGGCTGGCTTAGGCTGCATTCTTCGTTCTCTTGCAGATATTAAGAATACAGTTTGA

Protein sequence

MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSLADIKNTV
Homology
[Close]
BLAST of Lcy10g008880 vs. ExPASy Swiss-Prot
Match: Q9M117 (Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=ARPC5A PE=1 SV=2)

HSP 1 Score: 231.9 bits (590), Expect = 4.3e-60
Identity = 114/130 (87.69%), Postives = 119/130 (91.54%), Query Frame = 0 

Query: 6   EFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSANWIVVH 65
           EFVEADNAEAII RIE KSRKIESLLKQ K +EALKTALEGSPP TRDERCKSANWIVVH
Sbjct: 3   EFVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVH 62

Query: 66  RALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCIL 125
           RALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTERAGLGCIL
Sbjct: 63  RALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCIL 122

Query: 126 RSLADIKNTV 136
           R L D  NTV
Sbjct: 123 RCLTDTINTV 132

[Close]
BLAST of Lcy10g008880 vs. ExPASy Swiss-Prot
Match: B3H6Y2 (Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=ARPC5B PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-54
Identity = 105/135 (77.78%), Postives = 115/135 (85.19%), Query Frame = 0 

Query: 1   MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 60
           MA    FVEADNAE I+ RIE KS+KIESLLK  K +EALKTAL+GSPP T DERCKSAN
Sbjct: 1   MAGAAAFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAG 120

Query: 121 LGCILRSLADIKNTV 136
           LGCILR L+D  NTV
Sbjct: 121 LGCILRCLSDTTNTV 135

[Close]
BLAST of Lcy10g008880 vs. ExPASy Swiss-Prot
Match: Q6DE18 (Actin-related protein 2/3 complex subunit 5-B OS=Xenopus laevis OX=8355 GN=arpc5-b PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.0e-10
Identity = 34/109 (31.19%), Postives = 61/109 (55.96%), Query Frame = 0 

Query: 26  KIESLLKQSKPIEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 85
           +++SL++Q + + A ++AL  SP N++++  K     +V + L + K  +++   ++LDP
Sbjct: 42  EVDSLIRQGELLRAFQSALRNSPVNSKNQVAKERTQAIVLKVLTSFKSNEIEKAVNTLDP 101

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSLADIK 133
              D+LMKY+Y+G       +    L+ HEK     GLG I+R L   K
Sbjct: 102 NGIDLLMKYIYKGFEKPTENSSAILLQWHEKAFVIGGLGSIVRVLTSRK 150

[Close]
BLAST of Lcy10g008880 vs. ExPASy Swiss-Prot
Match: O15511 (Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens OX=9606 GN=ARPC5 PE=1 SV=3)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-09
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0 

Query: 26  KIESLLKQSKPIEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 85
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSL 129
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]
BLAST of Lcy10g008880 vs. ExPASy Swiss-Prot
Match: Q5R516 (Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii OX=9601 GN=ARPC5 PE=2 SV=3)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-09
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0 

Query: 26  KIESLLKQSKPIEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 85
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSL 129
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]
BLAST of Lcy10g008880 vs. ExPASy TrEMBL
Match: A0A1S3B407 (Actin-related protein 2/3 complex subunit 5 OS=Cucumis melo OX=3656 GN=LOC103485501 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.2e-67
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 1   MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 60
           MATT EFVEADNAEAIITRIEHKSRKIESLLKQSKP+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADIKNTV 136
           LGCILRSLAD  NTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]
BLAST of Lcy10g008880 vs. ExPASy TrEMBL
Match: W9R3V7 (Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis OX=981085 GN=L484_021833 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.0e-67
Identity = 130/135 (96.30%), Postives = 131/135 (97.04%), Query Frame = 0 

Query: 1   MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 60
           MA TD FVEADNAEAIITRIEHKSRKIESLLKQSKP+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADIKNTV 136
           LGCILRSLAD  NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]
BLAST of Lcy10g008880 vs. ExPASy TrEMBL
Match: A0A0A0KD59 (Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus OX=3659 GN=Csa_6G008040 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.9e-66
Identity = 129/135 (95.56%), Postives = 131/135 (97.04%), Query Frame = 0 

Query: 1   MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 60
           MATT +FVEADNAEAIITRIEHKSRKIESLLKQ KP+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADIKNTV 136
           LGCILRSLAD  NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]
BLAST of Lcy10g008880 vs. ExPASy TrEMBL
Match: A0A7J7CD05 (Actin-related protein 2/3 complex subunit 5 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW18G00298 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.2e-66
Identity = 126/135 (93.33%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 1   MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 60
           MATT+EFVEADNAEAIITRIEHKSRKIESLLKQSKP+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTEEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKDVD +FS+LDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDVDALFSALDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADIKNTV 136
           LGCILR+LAD  NTV
Sbjct: 121 LGCILRALADTVNTV 135

[Close]
BLAST of Lcy10g008880 vs. ExPASy TrEMBL
Match: A0A6P4A354 (Actin-related protein 2/3 complex subunit 5 OS=Ziziphus jujuba OX=326968 GN=LOC107424250 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.5e-66
Identity = 128/135 (94.81%), Postives = 130/135 (96.30%), Query Frame = 0 

Query: 1   MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 60
           MA T EFVEADNAEAIITRIEHKSRKIESLLKQ KP+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTGEFVEADNAEAIITRIEHKSRKIESLLKQYKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADIKNTV 136
           LGCILRSLAD  NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]
BLAST of Lcy10g008880 vs. NCBI nr
Match: XP_008441367.1 (PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo])

HSP 1 Score: 264.6 bits (675), Expect = 4.6e-67
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 1   MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 60
           MATT EFVEADNAEAIITRIEHKSRKIESLLKQSKP+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADIKNTV 136
           LGCILRSLAD  NTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]
BLAST of Lcy10g008880 vs. NCBI nr
Match: XP_038884940.1 (actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884941.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884942.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884943.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida])

HSP 1 Score: 264.2 bits (674), Expect = 6.0e-67
Identity = 130/135 (96.30%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 1   MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 60
           MATT EFVEADNAEAIITRIEHKSRKIESLLKQS+P+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADIKNTV 136
           LGCILRSLAD  NTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]
BLAST of Lcy10g008880 vs. NCBI nr
Match: XP_010089302.1 (actin-related protein 2/3 complex subunit 5A [Morus notabilis] >EXB37627.1 Actin-related protein 2/3 complex subunit 5 [Morus notabilis])

HSP 1 Score: 263.5 bits (672), Expect = 1.0e-66
Identity = 130/135 (96.30%), Postives = 131/135 (97.04%), Query Frame = 0 

Query: 1   MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 60
           MA TD FVEADNAEAIITRIEHKSRKIESLLKQSKP+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADIKNTV 136
           LGCILRSLAD  NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]
BLAST of Lcy10g008880 vs. NCBI nr
Match: XP_004138489.1 (actin-related protein 2/3 complex subunit 5A [Cucumis sativus] >KGN45721.1 hypothetical protein Csa_005374 [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 3.9e-66
Identity = 129/135 (95.56%), Postives = 131/135 (97.04%), Query Frame = 0 

Query: 1   MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 60
           MATT +FVEADNAEAIITRIEHKSRKIESLLKQ KP+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADIKNTV 136
           LGCILRSLAD  NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]
BLAST of Lcy10g008880 vs. NCBI nr
Match: XP_038683274.1 (actin-related protein 2/3 complex subunit 5A [Tripterygium wilfordii] >XP_038683818.1 actin-related protein 2/3 complex subunit 5A [Tripterygium wilfordii] >KAF5731616.1 actin-related protein 2/3 complex subunit 5A [Tripterygium wilfordii])

HSP 1 Score: 260.4 bits (664), Expect = 8.7e-66
Identity = 126/135 (93.33%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 1   MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 60
           MATT+EFVEADNAEAIITRIEHKSRKIESLLKQSKP+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTEEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKDVD +FS+LDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDVDALFSALDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADIKNTV 136
           LGCILR+LAD  NTV
Sbjct: 121 LGCILRALADTVNTV 135

[Close]
BLAST of Lcy10g008880 vs. TAIR 10
Match: AT4G01710.1 (ARP2/3 complex 16 kDa subunit (p16-Arc) )

HSP 1 Score: 231.9 bits (590), Expect = 3.1e-61
Identity = 114/130 (87.69%), Postives = 119/130 (91.54%), Query Frame = 0 

Query: 6   EFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSANWIVVH 65
           EFVEADNAEAII RIE KSRKIESLLKQ K +EALKTALEGSPP TRDERCKSANWIVVH
Sbjct: 3   EFVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVH 62

Query: 66  RALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCIL 125
           RALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTERAGLGCIL
Sbjct: 63  RALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCIL 122

Query: 126 RSLADIKNTV 136
           R L D  NTV
Sbjct: 123 RCLTDTINTV 132

[Close]
BLAST of Lcy10g008880 vs. TAIR 10
Match: AT5G65274.1 (ARP2/3 complex 16 kDa subunit (p16-Arc) )

HSP 1 Score: 213.8 bits (543), Expect = 8.7e-56
Identity = 105/135 (77.78%), Postives = 115/135 (85.19%), Query Frame = 0 

Query: 1   MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 60
           MA    FVEADNAE I+ RIE KS+KIESLLK  K +EALKTAL+GSPP T DERCKSAN
Sbjct: 1   MAGAAAFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAG 120

Query: 121 LGCILRSLADIKNTV 136
           LGCILR L+D  NTV
Sbjct: 121 LGCILRCLSDTTNTV 135

The following BLAST results are available for this feature:
BLAST of Lcy10g008880 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M1174.3e-6087.69Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=... [more]
B3H6Y21.2e-5477.78Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=... [more]
Q6DE187.0e-1031.19Actin-related protein 2/3 complex subunit 5-B OS=Xenopus laevis OX=8355 GN=arpc5... [more]
O155113.5e-0932.38Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens OX=9606 GN=ARPC5 PE=... [more]
Q5R5163.5e-0932.38Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii OX=9601 GN=ARPC5 PE=... [more]
BLAST of Lcy10g008880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B4072.2e-6797.04Actin-related protein 2/3 complex subunit 5 OS=Cucumis melo OX=3656 GN=LOC103485... [more]
W9R3V75.0e-6796.30Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis OX=981085 GN=L484... [more]
A0A0A0KD591.9e-6695.56Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus OX=3659 GN=Csa_6G... [more]
A0A7J7CD054.2e-6693.33Actin-related protein 2/3 complex subunit 5 OS=Tripterygium wilfordii OX=458696 ... [more]
A0A6P4A3545.5e-6694.81Actin-related protein 2/3 complex subunit 5 OS=Ziziphus jujuba OX=326968 GN=LOC1... [more]
BLAST of Lcy10g008880 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008441367.14.6e-6797.04PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo][more]
XP_038884940.16.0e-6796.30actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884941.1... [more]
XP_010089302.11.0e-6696.30actin-related protein 2/3 complex subunit 5A [Morus notabilis] >EXB37627.1 Actin... [more]
XP_004138489.13.9e-6695.56actin-related protein 2/3 complex subunit 5A [Cucumis sativus] >KGN45721.1 hypot... [more]
XP_038683274.18.7e-6693.33actin-related protein 2/3 complex subunit 5A [Tripterygium wilfordii] >XP_038683... [more]
BLAST of Lcy10g008880 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G01710.13.1e-6187.69ARP2/3 complex 16 kDa subunit (p16-Arc) [more]
AT5G65274.18.7e-5677.78ARP2/3 complex 16 kDa subunit (p16-Arc) [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006789Actin-related protein 2/3 complex subunit 5PFAMPF04699P16-Arccoord: 8..132
e-value: 4.7E-23
score: 82.3
IPR006789Actin-related protein 2/3 complex subunit 5PANTHERPTHR12644ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARCcoord: 3..133
IPR036743Actin-related protein 2/3 complex subunit 5 superfamilyGENE3D1.25.40.190coord: 17..133
e-value: 4.6E-31
score: 109.4
IPR036743Actin-related protein 2/3 complex subunit 5 superfamilySUPERFAMILY69103Arp2/3 complex 16 kDa subunit ARPC5coord: 4..132
NoneNo IPR availablePANTHERPTHR12644:SF0ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 5coord: 3..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g008880.1Lcy10g008880.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0030833 regulation of actin filament polymerization
cellular_component GO:0005885 Arp2/3 protein complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0015629 actin cytoskeleton
molecular_function GO:0051015 actin filament binding