Lcy10g008280 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g008280
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionzf-RVT domain-containing protein
LocationChr10: 33790263 .. 33794702 (-)
RNA-Seq ExpressionLcy10g008280
SyntenyLcy10g008280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTTCTTCAAGTCTTTCTTCCGCTGCTGACGACCGATTACCGGTCTTGTCCTCGTCAACCACTAATCCTGTCACTACTCCTATTCCCTCTCAGCGTAATAATCCAAATGTTTCCACCCCGTTATCTACTGGTTTTCCCCGAACCCTCAACCCTAATGTCCCTCTGTTTACCACTGGTATGAACCCTGGTTTTCTTCAGCATCCAGTCTTATCTTCTGCTTCTCCGAGCCATGGTTTTCAGTACCCCCCACTGTTGGTCGCTACTGCAAGCGCACGGTATCGCAAGTAATATAAAACGGAAGAATTCCGAGTATCGAATCCATAGGGAGGCGAAGCGAAATTTAAGCAAGCAAAGATTCCTAGAGCACTAAAAATACTTGGGATAAACAATATTTAGGGACCAGATCATGCAATCAAAGAAAATTAAAAATCAAAACAATTAGAGAGAAAATTTGATCAATCGATAAAAATAAAATGCGGAGAAAGAGTTTTCTAATGGGAAGAGGGGTCTTGAAAATCAATTATTAGCTAAACAATTGCTACAATTGTCCTATCTCGTTGCCCAACTAATTATACTCCTAGAATCTCCGTTAATAACATAGGTTCTCCTGTCGGTCTCCCCTAATTGTAATTAATTTATTTTAACAACCTAAGTGTCCTTAGCGCCATTAAAAATCATTAATTATTACGCTCTGATTCATTTTAGGAATCTGAGTTTAATCAACTAATCCCGTTGTCACGACGGGCAATTAAACTAGTTGCATGGATTACGATTTATCCTAACTTCTCTCCGTCGAGTTTCCATTAAGAATCAGATCAGTACACAATTGGCTAGATTGCATAAAGCATTAAGCACATCCATACAAATAATTAGGACAAAGGGCTAGAGATAGGCAATTATAACAACATTTGAACTATAATTTCATTTCAAGACCCCAAATTGGGGTTTAGCTATACATAGCTAAAGTATTCACAATAATTACAACGGAAAGCATAATAAAGAGCATAATAAAAGGGAAGGAATTGACCGTAGAAGACCCCTTCGCTACGCTTGGAGTCCCTCCGAAAACTCCTTGAGCCTCCTAGGATGCTCCCTAAAATTCCCCAAAATTTTCCCACTAAGAAAGCTCTCAAAAGGCTAGAAAGCCTTGAGAGTGGCTCCAAGGGAGCCAAAGAAAGAAAGGAAGGAATGAGGAAATGATGATTGATGTCTAAAATGAGGCACCAAGGGGCGCCTTTTATAGGCTCGGAAATGGGGTAGCGTCGCGACGCTGTGACATCATCAACTTGCCGGTCAAGAAATGGACAGCGTCTCGACGCTAGGCGTTTTCCAGACTTTCCAGCTGCGGATTGGGCTTCTTTGCTTGGGCCAACTTCAATTCTTTTTGGGCTTTTTCTTCATAATTGTCCTCTTTTGACTCCCCTTGACCCAAGCATGGAAATTGGGCTTGAATGGCTTCATTTTGGACACTTTTTCCATGAAATCCACAACTTTGCTCCTAAAGACCAAATAACAAAATATATGAAATATTTTCAATAAAAACACAATTAAAGCACAAAAAAGCCTAATAAATTGGGACTAAAATAGCTACATTTCTGCTCGCTATCACCCACCCTTTTCTTCTGCTCCGACTGTGTTTCCACCTTTCAATGTCGCTCAACAACCTTTTCCCCAAATTCCCCAAACTTCTTCTCCGTATCCCTCCCTCACCCCTCCCCTGCACATCAAATTGTCGAATTCGAGAATTACCTTTTATGGAAGAATCAACTGCTTAACCATATTATTGCTTTCGATATGGAAGGTTTTCATAAATGGCACTTTGGCTCCACAACGGTTCTTGGATACAGCTCAGACCCAGGTAAATCCGCAATTTCTTGTTTGGAAAAACTTGATGCGCAAATTGCTTACCGCAAGTGTACGGGTCAAGTAATAATATAGTGTTTTCGTGTAAAACGAGTGTCGTCCTCTGGATTGGTTTTCTAGCAAATTAAGTACCGTGAATACTTTTGTTCAATTTTATTTAGGGAGCAAAACTTAATGAAAAAGATAAATCTAAAGACAAAAAACATAAAATAAAGGTGGAGACTCAAAGGGAAAGACCCTTAGGGAATTGATTTCATTATTTAAGATTGAGGATTGATTAACAGGAATGAATTGATCGTGCAATTATTCTACAAGCCAAGGAAACTTTTATCATGATTACCTCTCCCGAGTATAATTGATTCTCATGCATATAACTAACTTGATATCCCTATCTAAGTTCATTAACATGCAAGGCATTATTCGGTTTAATCCTTGTTATACTTCTAGAGATATTCCAAATCCTATCACAAACTTAGAATTTCTACTCTAGTCATGCAATTAAACAAGGCAAGTCTTAGGCCAAATCCTCTCTCCCGAGTTAGATTCAACACTTAAAACATTCAATTAGTGATCAAGTAATTGAAAGCATTACACAAAATTGCATGCATAAAATAAAAGCACATTCATACCAAAAATCAATCCAACAACTAAAACAACTACATCAATCCCTAAGACAAACAACTAGAAATTCATAGTCTTTAAACCACAAACACTAATTGCAAGAAAAGCCATAAAAACTATAAGAGTTAAGGGAAAGAGAAAGGAAAACTCGAATCCGTCGAAACCGGCACGTCCCCGTCACGATCTCCACGTCTTCTCACTTGATTCCCGCTCCTTGGCCTTGCTTTAGCTCCCACCAAAGGTCTCTAGTCGAAACTAGGGCTAAAATCTAACCAATTGGACTCCTCCAATCCGTAGCACAAAAAGAAGAATTTATAGAAAATCTGCCGATAGCGCCGCGACGCTGTGCCTTTGCCGCGTATTCTGAATAAGGAAAACCTGACAGCGTCTCGACGCTCTTGTCACAGCGTCTCGACGCTGTGACCTCTGCAGCCCAACTCGATTAAGGAATCAGCTAGCGTCGAGACGCCACAAGGCTAGCGTCGATACGCTAGCTCTCGGCCAAGCCCACTTGGAGAAGCTTCCAACATGATTCTTTTCGGCTCCTTAGCTTCTTTTGGCATCCCAAACACCCGATTAACTCCAATTTCACGTTTTAGCTCCAATAAACCAATTTCTACAAAATAAACATTAAAGTGCATTAAAATGGCCACAAATTACTCAAAGACTAACTAAAATGTACTGGGAAACATAGCTCGCTATGCGCGCTATCACAGAAGTACAATCGAATTCTTATGGGATGGATTTATTCCTTTCTCAATGAGGACAAGCTTGGAGAGATTATTGGCTGCTCTTCAGTCTACGAGATTTGGGAGCATCTTCGGACAGTCTACGAATCATCTTCCACAGCGAGGATTATGGCTCTTCGGTCTCAACTCCAGAAAATTTGCAAGGATGCCTCACTGTTACTCAGTATCTCTCTCAAATCAAGGATATCGCCGACAAATTCTCTGCGAGCCGTTGTCTTACCGAGATCATCTCGCCTATATTCTGGAAGGTTTGGGAACAGAATATAATCCATTTGTCACCCAAAAAAGAACCCACCCACGTTGTGAGATTCGAAAGCAGCTACGCGAGCTAGAGTGTGAGCGATGCGATTCTGCTCATGAGAGCAGTGCTTGAACACTGAGCTATCCAGCTTCGGAGCCAAAGCAACTATGGCTTCCAAAATATTTTTGATTTCCGAGTGATCCTCCGCCTTGCCACTGATGCAGTCGATCACTTGCAAAGCGTCGGACTCAATAACCAGGTTTAGATTCTTTCAATAGTTTCCATGTATGCATTTCAGCGGATTCTAAAGATGAAATCATTTGGAAATTTGACAAAAGAGGTCTTTTCTCCGTTAAAAGCGCTTATCAGATAGCGTTAACCATCAAAGATAGGGATGAACCCTCCTCTTCGGATCCTTCTAGCCAATCTCGCCTTTGGAAATCTATATGGAAGCTCGAGATCCCCCCTAGAGCCAAACTTTGCAGCTGGAAAATTATAAAGAATGTCATTCCTACTAAGGACAATATTCAATCTAAAAGTGTTGATGCTCCTAATTTTTGTGGTTTTTGCAGGAAATTTAGGGAAACTACGGTGCACGTGATCTGGGAGTGCAAAGAGGTAAGGAAAATCTGGCATCTCTATCTTCCTAGTTCTGAAGCTCTATTCTCTTTCAACAGGAATGGATGGTCCAGCAAGGATTACTGGGGATGGTGGATGGACAAATCTAGGCCGGAGGACCTGTGTTCGGTAGTAATAATCATGTGGCAAATATGGAACGAAAGGAATCAGAGACTTAACGCATCTGGGAATTATCACAGCAGTCAGATTCTCATTCAAATTGACAACCAATTAGGGCAGCTGAAAAGGAATACAGAGAAGTACCAGGTTGGTCCCAATTCGGCTCTGGCAGAGAGCCTTCCGAGTCCCCCCAAATGGTCTCCACCGCCGGTCATTTTCTAG

mRNA sequence

ATGGCGTCTTCTTCAAGTCTTTCTTCCGCTGCTGACGACCGATTACCGGTCTTGTCCTCGTCAACCACTAATCCTGTCACTACTCCTATTCCCTCTCAGCGTAATAATCCAAATGTTTCCACCCCGTTATCTACTGGTTTTCCCCGAACCCTCAACCCTAATGTCCCTCTGTTTACCACTGCGGATTCTAAAGATGAAATCATTTGGAAATTTGACAAAAGAGGTCTTTTCTCCGTTAAAAGCGCTTATCAGATAGCGTTAACCATCAAAGATAGGGATGAACCCTCCTCTTCGGATCCTTCTAGCCAATCTCGCCTTTGGAAATCTATATGGAAGCTCGAGATCCCCCCTAGAGCCAAACTTTGCAGCTGGAAAATTATAAAGAATGTCATTCCTACTAAGGACAATATTCAATCTAAAAGTGTTGATGCTCCTAATTTTTGTGGTTTTTGCAGGAAATTTAGGGAAACTACGGTGCACGTGATCTGGGAGTGCAAAGAGGTAAGGAAAATCTGGCATCTCTATCTTCCTAGTTCTGAAGCTCTATTCTCTTTCAACAGGAATGGATGGTCCAGCAAGGATTACTGGGGATGGTGGATGGACAAATCTAGGCCGGAGGACCTGTGTTCGGTAGTAATAATCATGTGGCAAATATGGAACGAAAGGAATCAGAGACTTAACGCATCTGGGAATTATCACAGCAGTCAGATTCTCATTCAAATTGACAACCAATTAGGGCAGCTGAAAAGGAATACAGAGAAGTACCAGGTTGGTCCCAATTCGGCTCTGGCAGAGAGCCTTCCGAGTCCCCCCAAATGGTCTCCACCGCCGGTCATTTTCTAG

Coding sequence (CDS)

ATGGCGTCTTCTTCAAGTCTTTCTTCCGCTGCTGACGACCGATTACCGGTCTTGTCCTCGTCAACCACTAATCCTGTCACTACTCCTATTCCCTCTCAGCGTAATAATCCAAATGTTTCCACCCCGTTATCTACTGGTTTTCCCCGAACCCTCAACCCTAATGTCCCTCTGTTTACCACTGCGGATTCTAAAGATGAAATCATTTGGAAATTTGACAAAAGAGGTCTTTTCTCCGTTAAAAGCGCTTATCAGATAGCGTTAACCATCAAAGATAGGGATGAACCCTCCTCTTCGGATCCTTCTAGCCAATCTCGCCTTTGGAAATCTATATGGAAGCTCGAGATCCCCCCTAGAGCCAAACTTTGCAGCTGGAAAATTATAAAGAATGTCATTCCTACTAAGGACAATATTCAATCTAAAAGTGTTGATGCTCCTAATTTTTGTGGTTTTTGCAGGAAATTTAGGGAAACTACGGTGCACGTGATCTGGGAGTGCAAAGAGGTAAGGAAAATCTGGCATCTCTATCTTCCTAGTTCTGAAGCTCTATTCTCTTTCAACAGGAATGGATGGTCCAGCAAGGATTACTGGGGATGGTGGATGGACAAATCTAGGCCGGAGGACCTGTGTTCGGTAGTAATAATCATGTGGCAAATATGGAACGAAAGGAATCAGAGACTTAACGCATCTGGGAATTATCACAGCAGTCAGATTCTCATTCAAATTGACAACCAATTAGGGCAGCTGAAAAGGAATACAGAGAAGTACCAGGTTGGTCCCAATTCGGCTCTGGCAGAGAGCCTTCCGAGTCCCCCCAAATGGTCTCCACCGCCGGTCATTTTCTAG

Protein sequence

MASSSSLSSAADDRLPVLSSSTTNPVTTPIPSQRNNPNVSTPLSTGFPRTLNPNVPLFTTADSKDEIIWKFDKRGLFSVKSAYQIALTIKDRDEPSSSDPSSQSRLWKSIWKLEIPPRAKLCSWKIIKNVIPTKDNIQSKSVDAPNFCGFCRKFRETTVHVIWECKEVRKIWHLYLPSSEALFSFNRNGWSSKDYWGWWMDKSRPEDLCSVVIIMWQIWNERNQRLNASGNYHSSQILIQIDNQLGQLKRNTEKYQVGPNSALAESLPSPPKWSPPPVIF
Homology
BLAST of Lcy10g008280 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-12
Identity = 47/188 (25.00%), Postives = 81/188 (43.09%), Query Frame = 0

Query: 42  PLSTGFPRTLNPNVPLFTTADSKDEIIWKFDKRGLFSVKSAYQIALTIKDRDEPSSSDPS 101
           P +T   R     V L     ++D + WKF + G FSV+SAY++ LT+ +   P      
Sbjct: 230 PYTTNNTRLELRAVVLDLVTGARDRLSWKFSQDGQFSVRSAYEM-LTVDEVPRP------ 289

Query: 102 SQSRLWKSIWKLEIPPRAKLCSWKIIKNVIPTKDNIQSKSVDAPNFCGFCRKFRETTVHV 161
           + +  +  +WK+ +P R K   W +    + T++    + + A N C  C+   E+ +HV
Sbjct: 290 NMASFFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHV 349

Query: 162 IWECKEVRKIWHLYLPSSEALFSFNRNGWSSKDYWGWWMDKSRPEDLCSVV-------II 221
           + +C     IW   +P         + G+ SK  + W  D       C  +       +I
Sbjct: 350 LRDCPAQLGIWVRVVPQR------RQQGFFSKSLFEWLYDNLGDRSGCEDIPWSTIFAVI 404

Query: 222 MWQIWNER 223
           +W  W  R
Sbjct: 410 IWWGWKWR 404

BLAST of Lcy10g008280 vs. ExPASy TrEMBL
Match: A0A2P6QWT3 (Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0415961 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.0e-25
Identity = 65/210 (30.95%), Postives = 111/210 (52.86%), Query Frame = 0

Query: 64  KDEIIWKFDKRGLFSVKSAYQIALTIKDRDEPSSSDPSSQSRLWKSIWKLEIPPRAKLCS 123
           +D++IW +D +G FS KSAY++ALT+     P SS+ S   +LWK IW  ++P + K+ +
Sbjct: 3   QDKMIWHYDSKGRFSTKSAYRLALTLLHPTAPGSSNSSLGCQLWKQIWFAKVPGKIKIHT 62

Query: 124 WKIIKNVIPTKDNIQSKSVDAPNFCGFCRKFRETTVHVIWECKEVRKIWHLYLPSSEALF 183
           W++  +++PT   +QS+ V   N C FC    ET  H+  +C  VR ++ L+ P  + +F
Sbjct: 63  WRVCSSILPTISTLQSRHVFIDNGCYFCNTNDETIEHISRDCWFVRDLFKLF-PEFDRIF 122

Query: 184 SFNRNGWSSKDYWGWWMDKSRPEDLCSVVIIMWQIWNERNQRLNASGNYHSSQILIQIDN 243
                  S   +  + ++    ++   +++++W IW ERNQRL +       Q+  Q+ N
Sbjct: 123 REVLPSMSITSWLQFCLEILSQDEFALLLVLLWSIWKERNQRLWSRKFKTLHQVYFQVRN 182

Query: 244 QLGQLKRNTEKYQVGPNSALAESLPSPPKW 274
            +  LK +T +   G        LP P  W
Sbjct: 183 FVQLLKSSTSRRSRGVVRPRRSWLPPPSGW 211

BLAST of Lcy10g008280 vs. ExPASy TrEMBL
Match: A0A7N2LVY0 (zf-RVT domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.7e-24
Identity = 56/161 (34.78%), Postives = 86/161 (53.42%), Query Frame = 0

Query: 64  KDEIIWKFDKRGLFSVKSAYQIALTIKDRDEPSSSDPSSQSRLWKSIWKLEIPPRAKLCS 123
           +D +IWK +++  FSVKSAYQ+AL +K   E   S    + +LWK IW L++PP+ +   
Sbjct: 100 RDTLIWKENRKHEFSVKSAYQVALRLKQGVEAEHSRAREEGKLWKMIWDLKVPPKIRNFM 159

Query: 124 WKIIKNVIPTKDNIQSKSVDAPNFCGFCRKFRETTVHVIWECKEVRKIWHLYLPSSEALF 183
           W+ + N +PT+DN+  + V   + C FCR+  ET  HV+WEC   R +W L   +   + 
Sbjct: 160 WRAVSNNLPTRDNLYRRGVAVESTCEFCRQHHETEAHVLWECSFARNVWAL---AKGRVQ 219

Query: 184 SFNRNGWSSKDYWGWWMDKSRPEDLCSVVIIMWQIWNERNQ 225
             + N       +    +K   E+L       W IWN RN+
Sbjct: 220 KCSNNAQDFFQLFKLMQEKLTQEELDQWCTTTWAIWNARNK 257

BLAST of Lcy10g008280 vs. ExPASy TrEMBL
Match: A0A7N2LFZ6 (zf-RVT domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.3e-24
Identity = 62/195 (31.79%), Postives = 92/195 (47.18%), Query Frame = 0

Query: 56  PLFTTADSKDEIIWKFDKRGLFSVKSAYQIALTIKDRDEPSSSDPSSQSRLWKSIWKLEI 115
           P      ++D +IWK +    F+VKSAYQ+AL IKD+ +   S       +WK IWKL +
Sbjct: 57  PKMLNNTARDSLIWKENGSNKFTVKSAYQVALQIKDQAQSEHSRARMDRPIWKKIWKLNV 116

Query: 116 PPRAKLCSWKIIKNVIPTKDNIQSKSVDAPNFCGFCRKFRETTVHVIWECKEVRKIWHLY 175
           PP+  +  W+   N++ T+ N+  + V     CG C +  ET  HV+WEC   R +W L 
Sbjct: 117 PPKVLMFLWRACSNILSTRGNLHRRKVQVEPTCGLCCQCTETVEHVLWECLLARNVWAL- 176

Query: 176 LPSSEALFSFNRNGWSSKDYWGWWMDKSRPEDLCSVVIIMWQIWNERNQRLNASGNYHSS 235
             SS  +             +    DK  P++L     + W IWN RN+        H  
Sbjct: 177 --SSGKIQKCPNEAPEFYSLFRLLFDKLTPQELEQWATVSWAIWNARNKFCFEKTQRHPE 236

Query: 236 QILIQIDNQLGQLKR 251
           QIL +    L + +R
Sbjct: 237 QILREATGFLVEYQR 248

BLAST of Lcy10g008280 vs. ExPASy TrEMBL
Match: A0A2N9IWN7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56441 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-22
Identity = 60/170 (35.29%), Postives = 86/170 (50.59%), Query Frame = 0

Query: 55   VPLFTTADSKDEIIWKFDKRGLFSVKSAYQIALTIKDRDEPSSSDPSSQSRLWKSIWKLE 114
            +PL   A ++D+IIW     G+FS++SAY   LT+   D PSSS+ S+   LW  IW L 
Sbjct: 1572 IPLSLQA-AQDKIIWPHTPSGIFSIRSAYHFLLTVHQGDTPSSSNNSTGPGLWNKIWDLP 1631

Query: 115  IPPRAKLCSWKIIKNVIPTKDNIQSKSVDAPNFCGFCRKFRETTVHVIWECKEVRKIWHL 174
            IPP+ +   W+  ++ +PTK N++ + V     C  C    E   HVIW C    ++W+ 
Sbjct: 1632 IPPKIRHFLWRASRDALPTKSNLRRRKVLVDPICDECHSSEEDIFHVIWNCPVAHQLWNN 1691

Query: 175  YLPSSEALFSFNRNGWSSKDYWGWWMDKSRPEDLCSVVIIMWQIWNERNQ 225
                S+AL        S KD +   MD S  E  C   I  W +W  RN+
Sbjct: 1692 SPMFSQALID---RPSSFKDLFTLIMDSSSEELQCMFAIQAWLLWYHRNK 1737

BLAST of Lcy10g008280 vs. ExPASy TrEMBL
Match: A0A7J6F936 (CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_006510 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.5e-22
Identity = 67/218 (30.73%), Postives = 108/218 (49.54%), Query Frame = 0

Query: 63  SKDEIIWKFDKRGLFSVKSAYQIALTIKDRDEPSSSDPSSQSRLWKSIWKLEIPPRAKLC 122
           S+D +IW F K G + VKS YQ+A  I +     SS+       WK  W L +PPR KL 
Sbjct: 511 SEDMLIWPFTKDGNYIVKSGYQVAREI-NLTPTRSSNMDQTHAWWKMWWSLNLPPRMKLF 570

Query: 123 SWKIIKNVIPTKDNIQSKSVDAPNFCGFCRKFRETTVHVIWECKEVRKIWHLYLPSSEAL 182
            WK+ +N +P K N+  + +     C  C +F ET  H +W C++V+K+W L +PS + +
Sbjct: 571 GWKMCRNWLPAKTNLVHRGMKINPICTNCGRFEETLSHALWNCEKVKKVWKL-MPSYKII 630

Query: 183 FSFNRNGWSSKDYWGWWMDKSRPEDLCSVVIIMWQIWNERNQRLNASGNYHSSQILIQID 242
              +  G S  D    +  K   E+   VV ++W IW  RN++     + H +++L  + 
Sbjct: 631 --KDSRGNSMMDLLVEFRHKLAKEEFEDVVKVLWAIWENRNRQWTNQHSMHGARLLEWVF 690

Query: 243 NQLGQLKRNTEKYQVGPNSALAESLPSPP--KWSPPPV 279
           N   +        ++    +LA+  P+    +W  PPV
Sbjct: 691 NSYPR--------EIHRQESLAKMHPAAENNQWQTPPV 716

BLAST of Lcy10g008280 vs. NCBI nr
Match: PRQ38614.1 (putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Rosa chinensis])

HSP 1 Score: 126.3 bits (316), Expect = 4.1e-25
Identity = 65/210 (30.95%), Postives = 111/210 (52.86%), Query Frame = 0

Query: 64  KDEIIWKFDKRGLFSVKSAYQIALTIKDRDEPSSSDPSSQSRLWKSIWKLEIPPRAKLCS 123
           +D++IW +D +G FS KSAY++ALT+     P SS+ S   +LWK IW  ++P + K+ +
Sbjct: 3   QDKMIWHYDSKGRFSTKSAYRLALTLLHPTAPGSSNSSLGCQLWKQIWFAKVPGKIKIHT 62

Query: 124 WKIIKNVIPTKDNIQSKSVDAPNFCGFCRKFRETTVHVIWECKEVRKIWHLYLPSSEALF 183
           W++  +++PT   +QS+ V   N C FC    ET  H+  +C  VR ++ L+ P  + +F
Sbjct: 63  WRVCSSILPTISTLQSRHVFIDNGCYFCNTNDETIEHISRDCWFVRDLFKLF-PEFDRIF 122

Query: 184 SFNRNGWSSKDYWGWWMDKSRPEDLCSVVIIMWQIWNERNQRLNASGNYHSSQILIQIDN 243
                  S   +  + ++    ++   +++++W IW ERNQRL +       Q+  Q+ N
Sbjct: 123 REVLPSMSITSWLQFCLEILSQDEFALLLVLLWSIWKERNQRLWSRKFKTLHQVYFQVRN 182

Query: 244 QLGQLKRNTEKYQVGPNSALAESLPSPPKW 274
            +  LK +T +   G        LP P  W
Sbjct: 183 FVQLLKSSTSRRSRGVVRPRRSWLPPPSGW 211

BLAST of Lcy10g008280 vs. NCBI nr
Match: XP_023908235.1 (uncharacterized protein LOC112019924 [Quercus suber])

HSP 1 Score: 121.3 bits (303), Expect = 1.3e-23
Identity = 63/199 (31.66%), Postives = 103/199 (51.76%), Query Frame = 0

Query: 65   DEIIWKFDKRGLFSVKSAYQIALTI-KDRDEPSSSDPSSQSRLWKSIWKLEIPPRAKLCS 124
            D + WKF+K G+F+VKSAY++A T+ K  D   SS  S  SR+W ++WKL IP + K+  
Sbjct: 1232 DSVYWKFNKDGIFTVKSAYKVARTLSKKEDWAESSSGSGDSRVWVALWKLRIPNKIKVFG 1291

Query: 125  WKIIKNVIPTKDNIQSKSVDAPNFCGFCRKFRETTVHVIWECKEVRKIWHLYLPSSEALF 184
            W+   +++PT+ N++ K +   + C  C   +E+T+H +WEC   + IWH    S  AL 
Sbjct: 1292 WRACHDILPTRRNLRKKRILVDDLCPLCGLTQESTIHALWECTIAQDIWH---GSGRALQ 1351

Query: 185  SFNRNGWSSKDYWGWWMDKSRPEDLCSVVIIMWQIWNERNQRL-------------NASG 244
                          + +D+    ++ + ++  W IWN+RN+ L              A G
Sbjct: 1352 KCGTGQLDFVALLEYLLDRLNKTEVETFLVQAWLIWNQRNRVLYGGKLMEPGCLNRRAVG 1411

Query: 245  ---NYHSSQILIQIDNQLG 247
                +  SQ  +Q+D Q+G
Sbjct: 1412 LIEEFQQSQASLQVDAQMG 1427

BLAST of Lcy10g008280 vs. NCBI nr
Match: XP_006491472.1 (uncharacterized protein LOC102626455 [Citrus sinensis])

HSP 1 Score: 118.6 bits (296), Expect = 8.5e-23
Identity = 69/221 (31.22%), Postives = 114/221 (51.58%), Query Frame = 0

Query: 57   LFTTADSKDEIIWKFDKRGLFSVKSAYQIALTIKDRDEPSSSDPSSQSRLWKSIWKLEIP 116
            L  +   +DE++W FDK+G +SVKS YQ+AL     +EP SS  +S SRLWK  W L++P
Sbjct: 1085 LLPSGKEEDEVLWHFDKKGEYSVKSGYQLALNQNFPNEPESS--NSSSRLWKIPWMLDLP 1144

Query: 117  PRAKLCSWKIIKNVIPTKDNIQSKSVDAPNFCGFCRKFRETTVHVIWECKEVRKIWHLYL 176
             + K+  W+ +KN++PT +N+  +       C  C+   ET  HV+ ECK  RKIW L  
Sbjct: 1145 EKVKIFMWRALKNILPTAENLWKRRSLQEPICQRCKLQVETVSHVLIECKAARKIWDLAP 1204

Query: 177  PSSEALFSFNRNGWSS-KDYWGWWMDKSRPEDLCSVVIIMWQIWNERNQRLNASGNYHSS 236
               +     N++ +S+ ++ W     +S   +   +++  W IW+ RN+ +       S 
Sbjct: 1205 LIVQPSKDHNQDFFSAIQEMW----SRSSTAEAELMIVYCWVIWSARNKFIFEGKKSDSR 1264

Query: 237  QILIQIDNQLGQLKRNTEKYQVGPNSALAESLPSPPKWSPP 277
             +  + D+ L   +R ++   V  + A    +    KW PP
Sbjct: 1265 FLAAKADSVLKAYQRVSKPGNV--HGAKDRGI-DQQKWKPP 1296

BLAST of Lcy10g008280 vs. NCBI nr
Match: XP_042974832.1 (uncharacterized protein LOC122306468 [Carya illinoinensis])

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-22
Identity = 69/224 (30.80%), Postives = 102/224 (45.54%), Query Frame = 0

Query: 55   VPLFTTADSKDEIIWKFDKRGLFSVKSAYQIALTIKDRDEPSSSDPSSQSRLWKSIWKLE 114
            VP+ T     D +IW   + GLFSVKS Y +   I    E   S P  QS LWK +WKL+
Sbjct: 1000 VPI-TLGSRGDRLIWGCTQNGLFSVKSGYHLHQEIHANPEAGPSKPKDQSELWKGVWKLQ 1059

Query: 115  IPPRAKLCSWKIIKNVIPTKDNIQSKSVDAPNFCGFCRKFRETTVHVIWECKEVRKIWHL 174
            +P   K+  W+     +PT  N++ + + A + C  C +  ET  H +W C   R +W  
Sbjct: 1060 VPNGVKVFIWRACNEGLPTLANLKRRKIVAESTCPICGRVEETADHALWSCSAARDVW-- 1119

Query: 175  YLPSSEALFSFNRNGWSSKDYWGWWMDKSRPEDLCSVVIIMWQIWNERNQRLNASGNYHS 234
               +S+ +   +    S K+ W    DK     +  V  IM  IW  RN+ ++     H 
Sbjct: 1120 -CQASKPIQKLSLEVGSFKEVWQQITDKLPAARIEEVGSIMRLIWTRRNEVVHGKAFRHP 1179

Query: 235  SQILIQIDNQLGQLKRNTEKYQVGPNSALAESLPSPPKWSPPPV 279
            + IL++  + L   K      Q   +   AE+   P KW  PPV
Sbjct: 1180 NSILVKAQDDLYCYKL---AIQGRVSCRAAETSKCPQKWITPPV 1216

BLAST of Lcy10g008280 vs. NCBI nr
Match: XP_042988705.1 (uncharacterized protein LOC122316240 [Carya illinoinensis])

HSP 1 Score: 116.3 bits (290), Expect = 4.2e-22
Identity = 77/261 (29.50%), Postives = 114/261 (43.68%), Query Frame = 0

Query: 31   PSQRN------NPNVSTPLSTGFPRTLN-------PNVPLFTTADSKDEIIWKFDKRGLF 90
            P+QRN      NP++ T          N        +VP+ T     D +IW   + GLF
Sbjct: 963  PTQRNVVADLINPSLRTWNDHSLHEMFNQQDIEVIKSVPI-TLGSRGDRLIWGCTQNGLF 1022

Query: 91   SVKSAYQIALTIKDRDEPSSSDPSSQSRLWKSIWKLEIPPRAKLCSWKIIKNVIPTKDNI 150
            SVKS Y +   I    E   S P  QS LWK +WKL++P   K+  W+     +PT  N+
Sbjct: 1023 SVKSGYHLHQEIHANPEAGPSKPKDQSELWKGVWKLQVPNGVKVFIWRACNEGLPTLANL 1082

Query: 151  QSKSVDAPNFCGFCRKFRETTVHVIWECKEVRKIWHLYLPSSEALFSFNRNGWSSKDYWG 210
            + + + A + C  C +  ET  H +W C   R +W     +S+ +   +    S K+ W 
Sbjct: 1083 KRRKIVAESTCPICGRVEETADHALWSCSAARDVW---CQASKPIQKLSLEVGSFKEVWQ 1142

Query: 211  WWMDKSRPEDLCSVVIIMWQIWNERNQRLNASGNYHSSQILIQIDNQLGQLKRNTEKYQV 270
               DK     +  V  IM  IW  RN+ ++     H + IL++  + L   K      Q 
Sbjct: 1143 QITDKLPAARIEEVGSIMRLIWTRRNEVVHGKAFRHPNSILVKAQDDLYCYKL---AIQG 1202

Query: 271  GPNSALAESLPSPPKWSPPPV 279
              +   AE+   P KW  PPV
Sbjct: 1203 RVSCRAAETSKCPQKWITPPV 1216

BLAST of Lcy10g008280 vs. TAIR 10
Match: AT4G04650.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-10
Identity = 58/242 (23.97%), Postives = 103/242 (42.56%), Query Frame = 0

Query: 49  RTLNPNVPLFTTADSKDEIIWKFDKRGLFSVKSAYQIALTIKDRDEPSSSDPSSQSRLW- 108
           + L P           D  +WK D   L +  + +    T       S+  P S +  W 
Sbjct: 80  KNLLPEAQGLLDCQHDDSFLWKTD---LHAPSNRFSAPRTW------SALHPQSHTVPWH 139

Query: 109 KSIW-KLEIPPRAKLCSWKIIKNVIPTKDNIQSKSVDAPNFCGFCRKFRETTVHVIWECK 168
           K++W K  +P  A +C W +  N + T+D +Q+  +  P  C  C    ++  H+ +EC+
Sbjct: 140 KAVWFKNHVPKHAFIC-WVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQ 199

Query: 169 EVRKIWHLYLPSSEALFSFNRNGWSS-KDYWGWWMDKSRPEDLCSVVII-----MWQIWN 228
               +W  +  S+      N N  +   D   W +  SR +++C ++ +     ++ IW 
Sbjct: 200 FSGVVWRFFTAST------NLNPPAQLMDCLNWLLSPSREKNICLIIRLAFHSCVYAIWR 259

Query: 229 ERNQRLNASGNYHSSQIL----IQIDNQLGQLKRNTEKYQVGPNSALAESLPSPPKWSPP 279
           ERNQRL++  +  +  IL    + I  +L  L R+T  +Q    S L    P    +  P
Sbjct: 260 ERNQRLHSGVSRSTESILKDIQLIIRARLDPLSRST-AHQPNALSLLGTCEPEITVYKAP 304

BLAST of Lcy10g008280 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 7.4e-09
Identity = 41/190 (21.58%), Postives = 78/190 (41.05%), Query Frame = 0

Query: 94  EPSSSDPSSQSRLWKSIWKLEIPPRAKLCSWKIIKNVIPTKDNIQSKSVDAPNFCGFCRK 153
           +P    P  ++ +   IWKL+  P+ K   WK++   + T DN++ + +     C  C +
Sbjct: 2   DPEIQPPPGKAEIKAKIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQ 61

Query: 154 FRETTVHVIWECKEVRKIWHLY-LPSSEALFSFNRNGWSSKDYWGWWMDKSRPEDLCSVV 213
             ET+ H+ ++C   +++W    +P  E   +        +      +   +P+     +
Sbjct: 62  EDETSQHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAI 121

Query: 214 IIMWQIWNERNQRLNASGNYHSSQILIQIDNQLGQLKRNTEKYQVGPNSALAESLPSPP- 273
            I+W++W  RNQ +    +      L +  N + Q   +T  Y    N  +  S    P 
Sbjct: 122 WILWRLWKSRNQLVFQQKSISWQNTLQRARNDV-QEWEDTNTYVQSLNQQVHSSRHQQPT 181

Query: 274 ----KWSPPP 278
               KW  PP
Sbjct: 182 MARTKWQRPP 190

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P0C2F61.1e-1225.00Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
Match NameE-valueIdentityDescription
A0A2P6QWT32.0e-2530.95Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-c... [more]
A0A7N2LVY03.7e-2434.78zf-RVT domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A7N2LFZ68.3e-2431.79zf-RVT domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A2N9IWN72.7e-2235.29Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56441 PE=4 SV=1[more]
A0A7J6F9363.5e-2230.73CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_006510 P... [more]
Match NameE-valueIdentityDescription
PRQ38614.14.1e-2530.95putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-c... [more]
XP_023908235.11.3e-2331.66uncharacterized protein LOC112019924 [Quercus suber][more]
XP_006491472.18.5e-2331.22uncharacterized protein LOC102626455 [Citrus sinensis][more]
XP_042974832.11.1e-2230.80uncharacterized protein LOC122306468 [Carya illinoinensis][more]
XP_042988705.14.2e-2229.50uncharacterized protein LOC122316240 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
AT4G04650.11.4e-1023.97RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT3G25270.17.4e-0921.58Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 77..172
e-value: 5.7E-17
score: 62.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 260..280
NoneNo IPR availablePANTHERPTHR46736FAMILY NOT NAMEDcoord: 42..248
NoneNo IPR availablePANTHERPTHR46736:SF6SUBFAMILY NOT NAMEDcoord: 42..248

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g008280.1Lcy10g008280.1mRNA