Lcy10g008240 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g008240
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Membrane-associated 30 kDa protein
Location	Chr10: 33742215 .. 33742684 (-)
RNA-Seq Expression	Lcy10g008240
Synteny	Lcy10g008240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAATCTTTGCTTTTGAGCATCATGAGGTTCCAAAAGATTACCACCCTTTTGATCGTCTGTGTTGTGTTTGGTGTTGTTTTGAGTCAGATCAATGTGGCGGACGCAGCACGAGTGCTCCCAGAGACTTCAAATCATGGTGTTGATTATGTTGATCCGTATTCAATAGTTTATCAGAAAGCAAAGGAGACTGTCTCGTGTTGGCTTGGGAAGTTATCTTCTGGACCGAGCCCCAGTGGCCCGGGTCACTAGAGCTTGTATTTAAAGCAAACTCTATCTTTGATACTCTGAGACAATAGAGAATTATTTTTTTTCTTAGTTTTTTATTATTTTATTTCTTTTTATCCTTTGGCCGACTTTTGGGCCTTCATATACTTATGTTGTTCCATCACACAAAAGTGCATAGAAATAGAATAGTGTATTATTTT

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAATCTTTGCTTTTGAGCATCATGAGGTTCCAAAAGATTACCACCCTTTTGATCGTCTGTGTTGTGTTTGGTGTTGTTTTGAGTCAGATCAATGTGGCGGACGCAGCACGAGTGCTCCCAGAGACTTCAAATCATGGTGTTGATTATGTTGATCCGTATTCAATAGTTTATCAGAAAGCAAAGGAGACTGTCTCGTGTTGGCTTGGGAAGTTATCTTCTGGACCGAGCCCCAGTGGCCCGGGTCACTAGAGCTTGTATTTAAAGCAAACTCTATCTTTGATACTCTGAGACAATAGAGAATTATTTTTTTTCTTAGTTTTTTATTATTTTATTTCTTTTTATCCTTTGGCCGACTTTTGGGCCTTCATATACTTATGTTGTTCCATCACACAAAAGTGCATAGAAATAGAATAGTGTATTATTTT

Coding sequence (CDS)

ATGAGGTTCCAAAAGATTACCACCCTTTTGATCGTCTGTGTTGTGTTTGGTGTTGTTTTGAGTCAGATCAATGTGGCGGACGCAGCACGAGTGCTCCCAGAGACTTCAAATCATGGTGTTGATTATGTTGATCCGTATTCAATAGTTTATCAGAAAGCAAAGGAGACTGTCTCGTGTTGGCTTGGGAAGTTATCTTCTGGACCGAGCCCCAGTGGCCCGGGTCACTAG

Protein sequence

MRFQKITTLLIVCVVFGVVLSQINVADAARVLPETSNHGVDYVDPYSIVYQKAKETVSCWLGKLSSGPSPSGPGH

Homology

[Close]

BLAST of Lcy10g008240 vs. ExPASy TrEMBL
Match: A0A0A0KTV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011720 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.5e-25
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MRFQKITTLLIVCVVFGVVLSQINVADAARVL-----PETSNHGVDY-VDPYSIVYQKAK 60
          M+FQKITTLLIVCV+ GVVLSQINVADAAR+L      +  +HGVDY +DPYSIVYQKAK
Sbjct: 2  MKFQKITTLLIVCVLVGVVLSQINVADAARILLSETPRDDHDHGVDYHIDPYSIVYQKAK 61

Query: 61 ETVSCWLGKLSSGPSPSGPGH 76
          E++SCWLGKLSSGPSPSGPGH
Sbjct: 62 ESISCWLGKLSSGPSPSGPGH 82

[Close]

BLAST of Lcy10g008240 vs. ExPASy TrEMBL
Match: A0A5A7TL44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00460 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.5e-17
Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 1  MRFQKITTLLIVCVVFGVVLSQINVADAARVLPET--SNHGVDYVDPYSIVYQKAKETVS 60
          M+FQKI  LLI+CVVFG+V S I   DAAR+L ET   +H VD +D YSI + KAK++V 
Sbjct: 1  MKFQKIAALLIICVVFGIVFSHIGTVDAARMLSETLRDDHDVDCIDSYSIDHHKAKDSVK 60

Query: 61 CWLGKLSSGPSPSGPGH 76
          CWL  L SGPSP GPGH
Sbjct: 61 CWLENLESGPSPKGPGH 77

[Close]

BLAST of Lcy10g008240 vs. ExPASy TrEMBL
Match: A0A5D3BS33 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G00050 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.0e-16
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 1  MRFQKITTLLIVCVVFGVVLSQINVADAARVLPET--SNHGVDYVDPYSIVYQKAKETVS 60
          M+FQKI  LLI+C+VFG+V S I   DAAR+L ET   +H VD +D YSI + KAK++V 
Sbjct: 1  MKFQKIAALLIICLVFGIVFSHIGTVDAARMLSETLRDDHDVDCIDSYSIDHHKAKDSVK 60

Query: 61 CWLGKLSSGPSPSGPGH 76
          CWL  L SGPSP GPGH
Sbjct: 61 CWLENLESGPSPKGPGH 77

[Close]

BLAST of Lcy10g008240 vs. ExPASy TrEMBL
Match: A0A5A7TJV8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00490 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1  MRFQKITTLLIVCVVFGVVLSQINV--ADAARVLPET--SNHGVDYVDPYSIVYQKAKET 60
          M+FQKI  LLIVCVVFG+V S I++   DAAR+L ET   +H VD VDPYSI + KAK++
Sbjct: 1  MKFQKIAALLIVCVVFGIVFSHIDIGTVDAARMLFETLRDDHDVDCVDPYSIDHHKAKDS 60

Query: 61 VSCWLGKLSSGPSPSGPGH 76
          V CWL  L SGPS  GPGH
Sbjct: 61 VKCWLENLGSGPSLKGPGH 79

[Close]

BLAST of Lcy10g008240 vs. ExPASy TrEMBL
Match: A0A2P2J3U6 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.5e-12
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 1  MRFQKITTLLIVCVVFGVVLSQINVADAARVLPETSNHGVDYVDPYSIVYQKAKETVSCW 60
          M FQK+ TL +V V+   +LSQ+ V +AAR LPE    G  +++ YS VY+KAK T++CW
Sbjct: 1  MSFQKVATLFLVFVISLAILSQVKV-EAARALPE-DFAGAAHLETYSSVYEKAKNTMACW 60

Query: 61 LGKLSSGPSPSGPGH 76
          LG+L+SGPSP GPGH
Sbjct: 61 LGRLASGPSPKGPGH 73

[Close]

BLAST of Lcy10g008240 vs. NCBI nr
Match: KAG7018440.1 (hypothetical protein SDJN02_20308, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MRFQKITTLLIVCVVFGVVLSQINVADAARVLPETSNHGVDYVDPYSIVYQKAKETVSCW 60
          M+FQKI +  IVCVVFG++LSQI+  DAARVL ETSNHGVDY+DPYSIVYQKAKETVSCW
Sbjct: 11 MKFQKIRSFFIVCVVFGIILSQISTIDAARVLSETSNHGVDYIDPYSIVYQKAKETVSCW 70

Query: 61 LGKLSSGPSPSGPGH 76
          LGKLSSGPSPSGPGH
Sbjct: 71 LGKLSSGPSPSGPGH 85

[Close]

BLAST of Lcy10g008240 vs. NCBI nr
Match: KGN53025.1 (hypothetical protein Csa_015299 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 9.2e-25
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MRFQKITTLLIVCVVFGVVLSQINVADAARVL-----PETSNHGVDY-VDPYSIVYQKAK 60
          M+FQKITTLLIVCV+ GVVLSQINVADAAR+L      +  +HGVDY +DPYSIVYQKAK
Sbjct: 2  MKFQKITTLLIVCVLVGVVLSQINVADAARILLSETPRDDHDHGVDYHIDPYSIVYQKAK 61

Query: 61 ETVSCWLGKLSSGPSPSGPGH 76
          E++SCWLGKLSSGPSPSGPGH
Sbjct: 62 ESISCWLGKLSSGPSPSGPGH 82

[Close]

BLAST of Lcy10g008240 vs. NCBI nr
Match: KAA0043548.1 (hypothetical protein E6C27_scaffold335G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 9.2e-17
Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 1  MRFQKITTLLIVCVVFGVVLSQINVADAARVLPET--SNHGVDYVDPYSIVYQKAKETVS 60
          M+FQKI  LLI+CVVFG+V S I   DAAR+L ET   +H VD +D YSI + KAK++V 
Sbjct: 1  MKFQKIAALLIICVVFGIVFSHIGTVDAARMLSETLRDDHDVDCIDSYSIDHHKAKDSVK 60

Query: 61 CWLGKLSSGPSPSGPGH 76
          CWL  L SGPSP GPGH
Sbjct: 61 CWLENLESGPSPKGPGH 77

[Close]

BLAST of Lcy10g008240 vs. NCBI nr
Match: TYK02483.1 (hypothetical protein E5676_scaffold784G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-16
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 1  MRFQKITTLLIVCVVFGVVLSQINVADAARVLPET--SNHGVDYVDPYSIVYQKAKETVS 60
          M+FQKI  LLI+C+VFG+V S I   DAAR+L ET   +H VD +D YSI + KAK++V 
Sbjct: 1  MKFQKIAALLIICLVFGIVFSHIGTVDAARMLSETLRDDHDVDCIDSYSIDHHKAKDSVK 60

Query: 61 CWLGKLSSGPSPSGPGH 76
          CWL  L SGPSP GPGH
Sbjct: 61 CWLENLESGPSPKGPGH 77

[Close]

BLAST of Lcy10g008240 vs. NCBI nr
Match: KAA0043550.1 (hypothetical protein E6C27_scaffold335G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 2.3e-15
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1  MRFQKITTLLIVCVVFGVVLSQINV--ADAARVLPET--SNHGVDYVDPYSIVYQKAKET 60
          M+FQKI  LLIVCVVFG+V S I++   DAAR+L ET   +H VD VDPYSI + KAK++
Sbjct: 1  MKFQKIAALLIVCVVFGIVFSHIDIGTVDAARMLFETLRDDHDVDCVDPYSIDHHKAKDS 60

Query: 61 VSCWLGKLSSGPSPSGPGH 76
          V CWL  L SGPS  GPGH
Sbjct: 61 VKCWLENLGSGPSLKGPGH 79

The following BLAST results are available for this feature:

BLAST of Lcy10g008240 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g008240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTV4	4.5e-25	77.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011720 PE=4 SV=1	[more]
A0A5A7TL44	4.5e-17	61.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BS33	1.0e-16	59.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TJV8	1.1e-15	62.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A2P2J3U6	2.5e-12	54.67	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

BLAST of Lcy10g008240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018440.1	3.1e-28	84.00	hypothetical protein SDJN02_20308, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN53025.1	9.2e-25	77.78	hypothetical protein Csa_015299 [Cucumis sativus]	[more]
KAA0043548.1	9.2e-17	61.04	hypothetical protein E6C27_scaffold335G00460 [Cucumis melo var. makuwa]	[more]
TYK02483.1	2.1e-16	59.74	hypothetical protein E5676_scaffold784G00050 [Cucumis melo var. makuwa]	[more]
KAA0043550.1	2.3e-15	62.03	hypothetical protein E6C27_scaffold335G00490 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy10g008240 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040273	PAMP-induced secreted peptide 1	PANTHER	PTHR37245	PAMP-INDUCED SECRETED PEPTIDE 1	coord: 1..75
None	No IPR available	PANTHER	PTHR37245:SF4	PAMP-INDUCED SECRETED PEPTIDE 1	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g008240.1	Lcy10g008240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response