Lcy10g007930 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g007930
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRibonuclease H-like superfamily protein
LocationChr10: 33059021 .. 33059767 (-)
RNA-Seq ExpressionLcy10g007930
SyntenyLcy10g007930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACCTAAGCAAAGAGGACCTGGACAAAAGCGCCATCTTAATGTGGCAGATTTGGACGATGAGGAACAGAGAGGACCCGAAACCAAAAGACAGAGCAGTAGACTTTCTCACCAAGACAGTCATCAATTATATTTCAGAAAGGGAAAATTCATACCTCAAGCAACATCCGCCAAAGAGATCGAGGCTCCTTGCGAATCAAGCTCAATGGTCGAAACCGAGGCCGGGATGCTGGAAATTGAACGCTGATGCTTCGTGGAGCGAGAGGAAAAAGAAAGGAGGCCTCGGTTGGGTTGTGCGTGATTCGAGCGGATCCCCTATCTGCTTTGGCCTGAAACAAATTCACCGGAACGGGTCTATCAAGACGATGGAAGCCATGGCAATTCTTGAAGGTCTGAAGGAGATTGCCGATTCCTGTCTCCGTTCGAACTTGGCGCTAGAGGTGGAGACCGATTCCATGGAGGTAGTTTCAATTCTGTCGGGCGCGAAGGAAGACCTATCGGAATTGAAAATCTTCACGGATGAAATTCGCTCCATTGCCTCGCGTTTTCGTGAAATTTCATTTAGCCATTGTTGTAGACCGAAGAACACAGTAGCCCACTGTGTTGCTAATTTTGCTTGTAATTCGGTTTTTGTCGATCCGCAAGAGATCTCCCCTTCGTGGGAAAAAGGGCTTCTTTTTTGGGCTCCTGAACTTCCTTTGTGGTTCCTCCCTTTTATTAATGAGGGTAGGAATGACAGTTAG

mRNA sequence

ATGGAGAACCTAAGCAAAGAGGACCTGGACAAAAGCGCCATCTTAATGTGGCAGATTTGGACGATGAGGAACAGAGAGGACCCGAAACCAAAAGACAGAGCAGTAGACTTTCTCACCAAGACAGTCATCAATTATATTTCAGAAAGGGAAAATTCATACCTCAAGCAACATCCGCCAAAGAGATCGAGGCTCCTTGCGAATCAAGCTCAATGGTCGAAACCGAGGCCGGGATGCTGGAAATTGAACGCTGATGCTTCGTGGAGCGAGAGGAAAAAGAAAGGAGGCCTCGGTTGGGTTGTGCGTGATTCGAGCGGATCCCCTATCTGCTTTGGCCTGAAACAAATTCACCGGAACGGGTCTATCAAGACGATGGAAGCCATGGCAATTCTTGAAGGTCTGAAGGAGATTGCCGATTCCTGTCTCCGTTCGAACTTGGCGCTAGAGGTGGAGACCGATTCCATGGAGGTAGTTTCAATTCTGTCGGGCGCGAAGGAAGACCTATCGGAATTGAAAATCTTCACGGATGAAATTCGCTCCATTGCCTCGCGTTTTCGTGAAATTTCATTTAGCCATTGTTGTAGACCGAAGAACACAGTAGCCCACTGTGTTGCTAATTTTGCTTGTAATTCGGTTTTTGTCGATCCGCAAGAGATCTCCCCTTCGTGGGAAAAAGGGCTTCTTTTTTGGGCTCCTGAACTTCCTTTGTGGTTCCTCCCTTTTATTAATGAGGGTAGGAATGACAGTTAG

Coding sequence (CDS)

ATGGAGAACCTAAGCAAAGAGGACCTGGACAAAAGCGCCATCTTAATGTGGCAGATTTGGACGATGAGGAACAGAGAGGACCCGAAACCAAAAGACAGAGCAGTAGACTTTCTCACCAAGACAGTCATCAATTATATTTCAGAAAGGGAAAATTCATACCTCAAGCAACATCCGCCAAAGAGATCGAGGCTCCTTGCGAATCAAGCTCAATGGTCGAAACCGAGGCCGGGATGCTGGAAATTGAACGCTGATGCTTCGTGGAGCGAGAGGAAAAAGAAAGGAGGCCTCGGTTGGGTTGTGCGTGATTCGAGCGGATCCCCTATCTGCTTTGGCCTGAAACAAATTCACCGGAACGGGTCTATCAAGACGATGGAAGCCATGGCAATTCTTGAAGGTCTGAAGGAGATTGCCGATTCCTGTCTCCGTTCGAACTTGGCGCTAGAGGTGGAGACCGATTCCATGGAGGTAGTTTCAATTCTGTCGGGCGCGAAGGAAGACCTATCGGAATTGAAAATCTTCACGGATGAAATTCGCTCCATTGCCTCGCGTTTTCGTGAAATTTCATTTAGCCATTGTTGTAGACCGAAGAACACAGTAGCCCACTGTGTTGCTAATTTTGCTTGTAATTCGGTTTTTGTCGATCCGCAAGAGATCTCCCCTTCGTGGGAAAAAGGGCTTCTTTTTTGGGCTCCTGAACTTCCTTTGTGGTTCCTCCCTTTTATTAATGAGGGTAGGAATGACAGTTAG

Protein sequence

MENLSKEDLDKSAILMWQIWTMRNREDPKPKDRAVDFLTKTVINYISERENSYLKQHPPKRSRLLANQAQWSKPRPGCWKLNADASWSERKKKGGLGWVVRDSSGSPICFGLKQIHRNGSIKTMEAMAILEGLKEIADSCLRSNLALEVETDSMEVVSILSGAKEDLSELKIFTDEIRSIASRFREISFSHCCRPKNTVAHCVANFACNSVFVDPQEISPSWEKGLLFWAPELPLWFLPFINEGRNDS
Homology
BLAST of Lcy10g007930 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.8e-20
Identity = 70/211 (33.18%), Postives = 105/211 (49.76%), Query Frame = 0

Query: 1   MENLSKEDLDKSAILMWQIWTMRN----REDPKPKDRAVDFLTKTVINYISERENSYLKQ 60
           ++  S EDLD   I  W IW  RN    R +       +  LTK V     + E S    
Sbjct: 2   LDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSML 61

Query: 61  HPPKRSRLLANQAQWSKPRPGCWKLNADASWSERKKKGGLGWVVRDSSGSPICFGLKQIH 120
           H     + L N+ +W  P    W LNADASWS+   +GG+GW++R   G  +  G + + 
Sbjct: 62  H-----KTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVE 121

Query: 121 RNGSIKTMEAMAILEGLKEIADSCLRSNLALEVETDSMEVVSILSGAKEDLSELKIFTDE 180
              ++K +EA AILEGL+ + +  L     L +ETDS EV S+L+  +EDL++     +E
Sbjct: 122 ACNNVKLLEASAILEGLRNLTN--LGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEE 181

Query: 181 IRSIASRFREISFSHCCRPKNTVAHCVANFA 208
           I ++      ++F+   R  N  AH +A  A
Sbjct: 182 ILNLRDSCEILAFAKVGRETNGCAHSLAQRA 205

BLAST of Lcy10g007930 vs. ExPASy TrEMBL
Match: A0A803L9N8 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 72/244 (29.51%), Postives = 116/244 (47.54%), Query Frame = 0

Query: 6   KEDLDKSAILMWQIWTMRN-------REDPKPKDRAVDFLTKTVINYISERENSYLKQHP 65
           K+  +   + +W+IW MRN       R DP              +N+  E   + L++  
Sbjct: 62  KDSWELFLMFIWKIWEMRNKWLFEQVRVDPL-------IACSKTLNFFDEYVAANLREPT 121

Query: 66  PKRSRLLANQAQWSKPRPGCWKLNADASWSERKKKGGLGWVVRDSSGSPICFGLKQIHRN 125
               R       W  P    +KLN DAS S + ++GGLG VVRD+ G  +    K ++  
Sbjct: 122 TSIERSSEVTGLWIPPTSSRYKLNTDASIS-KDRRGGLGMVVRDNIGDVMMTWGKSLNGT 181

Query: 126 GSIKTMEAMAILEGLKEIADSCLRSNLALEVETDSMEVVSILSGAKEDLSELKIFTDEIR 185
           G I  +EA+A+L G++ + D+  R    LEV +D ++V+ +L+G+K + S  ++   +I 
Sbjct: 182 GIISEIEAVALLFGMRAVFDAGFRK---LEVSSDCLQVIELLNGSKHENSPTQLIVTDIL 241

Query: 186 SIASRFREISFSHCCRPKNTVAHCVANFACNSVFVDPQEISPSWEKGLLFWAPELPLWFL 243
           S A  F  + FS C R  N VAH +AN +          +S S E+   FW  + P    
Sbjct: 242 SFAYSFDFVCFSFCPRLCNKVAHSMANLS----------LSLSEER---FWMEDCPASVY 281

BLAST of Lcy10g007930 vs. ExPASy TrEMBL
Match: A0A5B7BU49 (RNase H domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_041820 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.3e-16
Identity = 71/219 (32.42%), Postives = 98/219 (44.75%), Query Frame = 0

Query: 20  WTMRNREDPKPKDRAVDFLTKTVINYISERENSYLKQHPPKRSRLLANQAQWSKPRPGCW 79
           W  RN      + RA + +      Y+ +   + ++Q     SR+      WS PR G +
Sbjct: 1   WGHRNAIVFGQRGRAPESIPAAASQYVMDFRTAQIRQQVMAVSRVQVGDVVWSPPREGIF 60

Query: 80  KLNADASWSERKKKGGLGWVVRDSSGSPICFGLKQIHRNGSIKTMEAMAILEGLKEIADS 139
           KLN  ASW   +  GG+G V+RD  G  I    KQI     I   EA+AIL GL    D 
Sbjct: 61  KLNVHASWVLGESCGGIGGVIRDWKGEVIGGFAKQIRTCSRIDFAEALAILHGLMFAKDV 120

Query: 140 CLRSNLALEVETDSMEVVSILSGAKEDLSELKIFTDEIRSIASRFREISFSHCCRPKNTV 199
            L+    L VE D + V+  +  + EDLSEL    D I+     F    F H  R  N+V
Sbjct: 121 GLQD---LSVEGDCLSVLIAIESSVEDLSELGHVFDHIKQCRDGFHSCDFGHVRRAANSV 180

Query: 200 AHCVANFACNSVFVDPQEISPSWEKGLLFWAPELPLWFL 239
           AH +A FA        + ++       +FW  +LP  FL
Sbjct: 181 AHEIAVFA--------RAVNDE-----VFWLEDLPERFL 203

BLAST of Lcy10g007930 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.3e-16
Identity = 58/180 (32.22%), Postives = 91/180 (50.56%), Query Frame = 0

Query: 4   LSKEDLDKSAILMWQIWTMRNRE-------DPKPKDRAVDFLTKTVIN--------YISE 63
           LS E++  S ++ WQIW  RNR        D +  DR++     + I+          S+
Sbjct: 26  LSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQ 85

Query: 64  RENSYLKQHPPKRSRLLANQAQWSKPRPGCWKLNADASWSERKKKGGLGWVVRDSSGSPI 123
           + + YL   P  R  L     +WS P   CWKLN DASWSE ++ GG+GW++ D  G  +
Sbjct: 86  QNDGYL---PRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIV 145

Query: 124 CFGLKQIHRNGSIKTMEAMAILEGLKEIADSCLRSNLALEVETDSMEVVSILSGAKEDLS 169
             G  +I     I  +E M I+ GL+ I    ++S   + +E+DS+EV+ ++     DL+
Sbjct: 146 LAGNCKIREKKEINALELMTIIRGLQFIN---MQSRSPIYLESDSVEVIRLMKKEDVDLT 199

BLAST of Lcy10g007930 vs. ExPASy TrEMBL
Match: B9FYJ3 (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_28268 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-14
Identity = 69/223 (30.94%), Postives = 103/223 (46.19%), Query Frame = 0

Query: 1    MENLSKEDLDKSAILMWQIWTMRNR-EDPKPKDRAV---DFLTKTVINYISERENSYL-- 60
            +E    ED     +++W+IW  RN     KP    +    F+   V++    +++     
Sbjct: 1009 LEQSQPEDQVMLLMVLWRIWHTRNEIVHGKPAPGILVSKRFIESYVLSLAEIKQHPQANP 1068

Query: 61   ------------KQHPPKRSRLLANQAQWSKPRPGCWKLNADASWSERKKKGGLGWVVRD 120
                        K H  KRSR  A   +WSKP PG  KLN D S+ E + KGG+G V+R+
Sbjct: 1069 EKGKHVVDVVLKKSHSIKRSREPAPD-KWSKPLPGSMKLNVDGSFQESEGKGGIGAVLRN 1128

Query: 121  SSGSPICFGLKQIHRNGSIKTMEAMAILEGLKEIADSCLRSNLALEVETDSMEVVSILSG 180
             +G  I      +    S   ME +A  +GL       L   L + +ETD + +V +   
Sbjct: 1129 CTGEVIFAACGHVDHCSSALEMELLASRDGLALALQWTL---LPIVIETDCLAMVHLFRD 1188

Query: 181  AKEDLSELKIFTDEIRSIASRFREISFSHCCRPKNTVAHCVAN 206
            A    SEL     EI S+    R+ISF+ C R +N ++HC+AN
Sbjct: 1189 ATGAKSELAFLITEIDSLLVGNRDISFNKCLRSQNLISHCLAN 1227

BLAST of Lcy10g007930 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 108.6 bits (270), Expect = 7.8e-20
Identity = 70/211 (33.18%), Postives = 105/211 (49.76%), Query Frame = 0

Query: 1   MENLSKEDLDKSAILMWQIWTMRN----REDPKPKDRAVDFLTKTVINYISERENSYLKQ 60
           ++  S EDLD   I  W IW  RN    R +       +  LTK V     + E S    
Sbjct: 2   LDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSML 61

Query: 61  HPPKRSRLLANQAQWSKPRPGCWKLNADASWSERKKKGGLGWVVRDSSGSPICFGLKQIH 120
           H     + L N+ +W  P    W LNADASWS+   +GG+GW++R   G  +  G + + 
Sbjct: 62  H-----KTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVE 121

Query: 121 RNGSIKTMEAMAILEGLKEIADSCLRSNLALEVETDSMEVVSILSGAKEDLSELKIFTDE 180
              ++K +EA AILEGL+ + +  L     L +ETDS EV S+L+  +EDL++     +E
Sbjct: 122 ACNNVKLLEASAILEGLRNLTN--LGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEE 181

Query: 181 IRSIASRFREISFSHCCRPKNTVAHCVANFA 208
           I ++      ++F+   R  N  AH +A  A
Sbjct: 182 ILNLRDSCEILAFAKVGRETNGCAHSLAQRA 205

BLAST of Lcy10g007930 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-17
Identity = 68/217 (31.34%), Postives = 104/217 (47.93%), Query Frame = 0

Query: 1   MENLSKEDLDKSAILMWQIWTMRNREDPK---PKDRAVDF-LTKTVINYISERENSYLKQ 60
           M+   +E+  +S I+ WQIW MRN+   K   P+ R +   + + +IN  S   N+ LK 
Sbjct: 1   MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIIN--SAGRNTNLKG 60

Query: 61  HPPKRSRLLANQ------AQWSKPRPGCWKLNADASWSERKKKGGLGWVVRDSSGSPICF 120
               +   L  +      AQW  P    WKLN +A+W      GG+GW++RD  G  I  
Sbjct: 61  KSTNKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKA 120

Query: 121 GLKQIHRNGSIKTMEAMAILEGLKEIADSCLRSNLALEVETDSMEVVSILSGAKEDLSEL 180
             + I    +I  +E MAI EGL+ I     R    + +E+DS+E + +L    +D +E+
Sbjct: 121 SCRIIRAERNITYLEVMAICEGLRAIRQEHCR---PIHLESDSLEAIHLLHRQCQDQTEI 180

Query: 181 KIFTDEIRSIASRFREISFSHCCRPKNTVAHCVANFA 208
               +EI  +      +S  H  R  N VAH +A  A
Sbjct: 181 IWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRA 212

BLAST of Lcy10g007930 vs. NCBI nr
Match: XP_021763631.1 (uncharacterized protein LOC110728264 [Chenopodium quinoa])

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-16
Identity = 72/244 (29.51%), Postives = 116/244 (47.54%), Query Frame = 0

Query: 6   KEDLDKSAILMWQIWTMRN-------REDPKPKDRAVDFLTKTVINYISERENSYLKQHP 65
           K+  +   + +W+IW MRN       R DP              +N+  E   + L++  
Sbjct: 62  KDSWELFLMFIWKIWEMRNKWLFEQVRVDPL-------IACSKTLNFFDEYVAANLREPT 121

Query: 66  PKRSRLLANQAQWSKPRPGCWKLNADASWSERKKKGGLGWVVRDSSGSPICFGLKQIHRN 125
               R       W  P    +KLN DAS S + ++GGLG VVRD+ G  +    K ++  
Sbjct: 122 TSIERSSEVTGLWIPPTSSRYKLNTDASIS-KDRRGGLGMVVRDNIGDVMMTWGKSLNGT 181

Query: 126 GSIKTMEAMAILEGLKEIADSCLRSNLALEVETDSMEVVSILSGAKEDLSELKIFTDEIR 185
           G I  +EA+A+L G++ + D+  R    LEV +D ++V+ +L+G+K + S  ++   +I 
Sbjct: 182 GIISEIEAVALLFGMRAVFDAGFRK---LEVSSDCLQVIELLNGSKHENSPTQLIVTDIL 241

Query: 186 SIASRFREISFSHCCRPKNTVAHCVANFACNSVFVDPQEISPSWEKGLLFWAPELPLWFL 243
           S A  F  + FS C R  N VAH +AN +          +S S E+   FW  + P    
Sbjct: 242 SFAYSFDFVCFSFCPRLCNKVAHSMANLS----------LSLSEER---FWMEDCPASVY 281

BLAST of Lcy10g007930 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 96.3 bits (238), Expect = 4.0e-16
Identity = 65/220 (29.55%), Postives = 100/220 (45.45%), Query Frame = 0

Query: 1   MENLSKEDLDKSAILMWQIWTMRNREDPKPKDRAVDFLTKTVINYI--SERENSYLKQHP 60
           M+   +E+  +S I+ WQIW MRN+   K        +   +  YI  S   ++ LK   
Sbjct: 1   MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKS 60

Query: 61  PKRSRLLANQ------AQWSKPRPGCWKLNADASWSERKKKGGLGWVVRDSSGSPICFGL 120
             +   L  +      A+W  P    WKLN DA+W      GG+GW++RD  G  I    
Sbjct: 61  ANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADC 120

Query: 121 KQIHRNGSIKTMEAMAILEGLKEIADSCLR-----SNLALEVETDSMEVVSILSGAKEDL 180
           + I    +I  +E MAI EGL+ I     R         + +E+DS+E + +L    +D 
Sbjct: 121 RIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQ 180

Query: 181 SELKIFTDEIRSIASRFREISFSHCCRPKNTVAHCVANFA 208
           +E+    +EI  +    + +S  H  R  N VAH +A  A
Sbjct: 181 TEIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRA 220

BLAST of Lcy10g007930 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-15
Identity = 58/180 (32.22%), Postives = 91/180 (50.56%), Query Frame = 0

Query: 4   LSKEDLDKSAILMWQIWTMRNRE-------DPKPKDRAVDFLTKTVIN--------YISE 63
           LS E++  S ++ WQIW  RNR        D +  DR++     + I+          S+
Sbjct: 26  LSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQ 85

Query: 64  RENSYLKQHPPKRSRLLANQAQWSKPRPGCWKLNADASWSERKKKGGLGWVVRDSSGSPI 123
           + + YL   P  R  L     +WS P   CWKLN DASWSE ++ GG+GW++ D  G  +
Sbjct: 86  QNDGYL---PRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIV 145

Query: 124 CFGLKQIHRNGSIKTMEAMAILEGLKEIADSCLRSNLALEVETDSMEVVSILSGAKEDLS 169
             G  +I     I  +E M I+ GL+ I    ++S   + +E+DS+EV+ ++     DL+
Sbjct: 146 LAGNCKIREKKEINALELMTIIRGLQFIN---MQSRSPIYLESDSVEVIRLMKKEDVDLT 199

BLAST of Lcy10g007930 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-12
Identity = 57/222 (25.68%), Postives = 100/222 (45.05%), Query Frame = 0

Query: 15  LMWQIWTMRN-------REDPKPKDRAVDFLTKTVINYISEREN------SYLKQHPPKR 74
           L+W+IW  RN       RE P          +KTV++  +E  +      S+ K   P R
Sbjct: 268 LIWRIWKARNNVVFNKFRESP----------SKTVLSAKAETHDWLNATQSHKKTPSPTR 327

Query: 75  SRLLANQAQWSKPRPGCWKLNADASWSERKKKGGLGWVVRDSSGSPICFGLKQIHRNGSI 134
            ++  N+ +W  P     K N DA +  +K +   GW++R+  G+PI +G  ++    + 
Sbjct: 328 -QIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNP 387

Query: 135 KTMEAMAILEGLKEIADSCLRSNLALEVETDSMEVVSILSGAKEDLSELKIFTDEIRSIA 194
              E  A+L  L++   + +R    + +E D   ++++++G     S L    ++I   A
Sbjct: 388 LEAETKALLAALQQ---TWIRGYTQVFMEGDCQTLINLINGISFH-SSLANHLEDISFWA 447

Query: 195 SRFREISFSHCCRPKNTVAHCVANFACN-SVFVDPQEISPSW 223
           ++F  I F    R  N +AH +A + C  S F       P W
Sbjct: 448 NKFASIQFGFIRRKGNKLAHVLAKYGCTYSTFYSGSGSLPIW 474

BLAST of Lcy10g007930 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-10
Identity = 57/219 (26.03%), Postives = 101/219 (46.12%), Query Frame = 0

Query: 15  LMWQIWTMRNREDPKPKD-RAVDFLTKTVINY--ISERENSYLKQHPPKRSRLLANQAQW 74
           L+W++W  RN    K K+  A + L + + ++   S R     K   P+  R L+   QW
Sbjct: 80  LLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLS--VQW 139

Query: 75  SKPRPGCWKLNADASWSERKKKGGLGWVVRDSSGSPICFGLKQIHRNGSIKTMEAMAILE 134
             P     K N DA+W     + G+GW++R+ SG  +  G + + R  ++   E    LE
Sbjct: 140 KAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAE----LE 199

Query: 135 GLKEIADSCLRSNL-ALEVETDSMEVVSILSGAKEDLSELKIFTDEIRSIASRFREISFS 194
            L+    +  R N   +  E+D+  +V++L+ + +    L+   ++I+ +   F E+ F 
Sbjct: 200 ALRWAVLTMSRFNYKRIIFESDAQALVNLLN-SDDFWPTLQPALEDIQQLLHHFEEVKFE 259

Query: 195 HCCRPKNTVAHCVANFACNSVFVDPQ--EISPSWEKGLL 228
              R  N VA  +A  + +    DP+   I P W +  L
Sbjct: 260 FTPRGGNKVADRIARESISFSNYDPKLFSIVPQWLRSTL 291

BLAST of Lcy10g007930 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-09
Identity = 60/221 (27.15%), Postives = 107/221 (48.42%), Query Frame = 0

Query: 15  LMWQIWTMRNREDPKPKD--------RAVDFLTKTVINYISERENSYLKQHPPKRSRLLA 74
           L+W++W  RN    + ++        RA D L +  I   +E E+   K   P+ +R  +
Sbjct: 363 LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIR--TEAESCGTK---PQVNR--S 422

Query: 75  NQAQWSKPRPGCW-KLNADASWSERKKKGGLGWVVRDSSGSPICFGLKQIHRNGSIKTME 134
           +  +W +P P  W K N DA+W+   ++ G+GWV+R+  G     G + + +  S+   E
Sbjct: 423 SCGRW-RPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAE 482

Query: 135 AMAILEGLKEIADSCLRSNLALEVETDSMEVVSILSGAKEDLSELKIFTDEIRSIASRFR 194
             A+   +  +  S  + N  +  E+DS  ++ IL+   E    LK    +++ + S+F 
Sbjct: 483 LEAMRWAVLSL--SRFQYNYVI-FESDSQVLIEILNN-DEIWPSLKPTIQDLQRLLSQFT 542

Query: 195 EISFSHCCRPKNTVAHCVANFACNSVFVDPQ--EISPSWEK 225
           E+ F    R  NT+A  VA  + + +  DP+   I PSW +
Sbjct: 543 EVKFVFIPREGNTLAERVARESLSFLNYDPKLYSIVPSWAR 571

BLAST of Lcy10g007930 vs. TAIR 10
Match: AT2G13980.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 7.3e-08
Identity = 41/159 (25.79%), Postives = 70/159 (44.03%), Query Frame = 0

Query: 65  LANQAQWSKPRPGCWKLNADASWSERKKKGGLGWVVRDSSGSPICFGLKQIHRNGSIKTM 124
           + +  +W  P     K N DA ++ +       W++R+  G    +G  Q+    +    
Sbjct: 7   VVHNTKWKAPPDTHIKCNYDAGFNVQNLDSTARWIIRNHDGIAQHWGSLQLDNTSTPLEA 66

Query: 125 EAMAILEGLKEIADSCLRSNLALEVETDSMEVVSILSGAKEDLSELKIFTDEIRSIASRF 184
           E  A+L  L++   + +R  L + +E D   + +++SG+    + L    D+IR  A +F
Sbjct: 67  ETKALLAALQQ---TWIRGYLRVIMEGDCETLTNLVSGSSSH-NHLANLLDDIRIWAKKF 126

Query: 185 REISFSHCCRPKNTVAHCVANFACNSV-FVDPQEISPSW 223
             + FS   R  N VAH +A   CNS  F       P W
Sbjct: 127 SNVQFSFVRRGGNKVAHELAKLGCNSTCFYSDSCTLPIW 161

BLAST of Lcy10g007930 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 8.9e-06
Identity = 48/195 (24.62%), Postives = 81/195 (41.54%), Query Frame = 0

Query: 15  LMWQIWTMRNREDPKPKDRAVDFLTKTVINYISERENSYL--KQHPPKRSRLLANQAQWS 74
           LMW+IW   N               +  +N   E  ++ +  +Q    R+   +   +WS
Sbjct: 47  LMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNADPSRNTKWS 106

Query: 75  KPRPGCWKLNADASWSERKKKGGLGWVVRDSSGSPICFGLKQIHRNGSIKTMEAMAILEG 134
            P     K N DAS  ER    GLGW++R+S G+ I  G+ +     + +  E   ++  
Sbjct: 107 PPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLIWA 166

Query: 135 LKEIADSCLRSNLALEVETDSMEVVSILSGAKEDLSELKIFTDEIRSIASRFREISFSHC 194
           ++    S    +  +  E D+  +  +++  K     L+ F D I+S    F  I FS  
Sbjct: 167 IQA---SYGFGHKKVIFEGDNQTITRMIN-TKSSNPRLQHFLDTIQSWIPSFESIEFSFK 226

Query: 195 CRPKNTVAHCVANFA 208
            R +N  A  +A  A
Sbjct: 227 HREQNGCADFLAKQA 237

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DNV93.8e-2033.18uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A803L9N81.1e-1629.51Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
A0A5B7BU494.3e-1632.42RNase H domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=... [more]
A0A6J1CQG07.3e-1632.22uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
B9FYJ32.4e-1430.94Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_28268 PE... [more]
Match NameE-valueIdentityDescription
XP_022155262.17.8e-2033.18uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022143535.11.2e-1731.34uncharacterized protein LOC111013412 [Momordica charantia][more]
XP_021763631.12.3e-1629.51uncharacterized protein LOC110728264 [Chenopodium quinoa][more]
XP_022156777.14.0e-1629.55uncharacterized protein LOC111023608 [Momordica charantia][more]
XP_022143317.11.5e-1532.22uncharacterized protein LOC111013216 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT3G09510.14.9e-1225.68Ribonuclease H-like superfamily protein [more]
AT2G34320.11.2e-1026.03Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT4G29090.11.0e-0927.15Ribonuclease H-like superfamily protein [more]
AT2G13980.17.3e-0825.79Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT5G65005.18.9e-0624.62Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 82..207
e-value: 3.4E-25
score: 88.2
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 79..212
e-value: 4.1E-17
score: 64.4
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 55..214
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 81..205
e-value: 3.62778E-24
score: 91.6068
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 78..209

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g007930.1Lcy10g007930.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity