Lcy10g007890 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g007890
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
LocationChr10: 32917614 .. 32920085 (-)
RNA-Seq ExpressionLcy10g007890
SyntenyLcy10g007890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAACCTTTATTTAACGTTTGAAGAAAACAAAATATTTTTACAGACTACATCCACCCCTCCGTTTTCTATCCAGACAAACTAAGGTAGATCGAAGTCGCAACGCCAAGCGCGTACACTGCGACCACAGTCCCAACCAGGTCCTTTCCAGACCCAGTCACAGCGCCGATTCCCGCGATTCCGGCGATTCCGACCGGGACTCGAAACATCACCTCTCTTCCAACGTTCTTCGCCACAGCCTCTGCGAATAGTTCGACCGCCCAACGCTTGAAGCGGGTCGGGCCTAGGGTTTCGTCTTCGCGGTCCGAATCCTCGCGATTGAGGGCTCGGAGGGCTGAGTCGACCTGGAGCCGAGTCGGGGGAGAGGGAAGCCACCTGGCGATGAGGGGATTTGGCTGGACGGCGGTGAGAAGGTGGTGGAGGTGGTCGGCGGCGGCGCAGAGTTGGTAGGGGAAAACGCCGCCGTATGCGTGCTGAGTTAGGGCGAGGCAGTGGGAGAAGGTTGAATTGCAGGCTGAGTCGAATTCGGGCGAGTTTGAAAGTGAGTTTTTGACTCGTTTTGAGGCTGATAGTCCCATTGGTCCTTCTTCCTCTTCTCTCTCCCTTCACTGATTCTGGTTTTCGTAGGACTTCCAAATTTCAGAAAAGAAATACACTTTCATATTTGGCTGTTCTTTTATGTTAATTTTAACTTTATCCGATTATATTTTAAATTATGGGAGAAAATAATTTTTTATCCGATTATAAGTAAACTGTGATTAATTTTAACTTTGAACTTTCAATTTAATCCAATTGAATTCCAAACCTAGCAGGTTTATCATTTTTTTTAATTTCATCAAATTGAATTTCAAATTTAACAATTGTATTGTTTTTAACTTCAAACTCACATCAGTGTTGCAAATAAGTACGTAATTGTCTATTTCATCTCTGTATTGGTTTCTTGTACAAAATTTATTGGATTTTTTTTTTATTTGAAGAAACTTTTGCTGCTGAGAAGTTGTACATGAATCTTCTCTCATTTTCTTCTTTTATGTTTTTTAAATTACTTAGAAGAACATACAATTATGGGATGATAGGAAAGCAGTTTGAGATTTTAAATTGTATTTGGTAAATTTTGAACGTAAATGCAATGAATGTCAGTTTGTTTATCCTGATATGATAGGACTGTCTTGTACGACCTTTTTACTGTGTTGTCTGTTACGAACGATCTGATTGACCTAATTCATTCGTGATTGCATATGCAGATGACAGCATTGGGATTAGGATCCAAGAAGGAGAAACATGTCTGGACACCGGAGGTGGACACAATCCTTGTGCAATGCCTAGTCCACTTGGTACAGATAGGAGGTTGGCGTAGAGATAATGGGACATTTTGACCAGGATTCCAGAACCAGATTGGGAAGATGATGAAAGAATGATTGCCATGTTGCAACATAGTTGTCAACCCAAATATTGAGTCCAGCTCCTGAAAAAACAATACATAGGAATTGTTGAGATGATGGGACCAGCTTGTAGTGGGTTTGGGTGGAACGAGGAGAGGAAGTGCATCGAGGCAGAGAAGATCTTTGATGCGTGGGTCGAGGTAAGACAACTGTGATCCTATTTATACCCAAACATTTCTGCTGTAGACTTTCGCTAACGAAATGACGACGTTTCACTCGCATGGTCACCCACAGGCTAAGGGGTCTCTAAAACCAGTCATTCCCTTGGTCTAATGAGCTGGCACTAGTGTTTGGGAAGGACAGTGCGAGAGGGAGCTCGCACTCCTATTGAGCTTACACCGGAACCGAAACCGGTAGTCCATCTTGAAGAGGACATGAACGTAGACTACGAAAATTGTTACGTCCCCAGTCCACCTGTTATTGATCCCACATATGGGGAAGAATTCTGTGGGACACTGACTAGCAAAGCAGTTGATGCAGGATTGTTTAAGACACTGCATAGGTGACGGTTGTCCATGGGAAACATGGCCGAGGTCTTGGAGAAAGGATTCCAACTAACTGCACAGCAGATTGAAAAGATTGCATTGTGGCTGACGAGGAAGGATGAGATGAAGCAAAATCGTCGGAAGGAGTTGTATGCAGAGCTGCAGTCGATACCTGGAGTGTCTATGGACGATGGCCTGGTGGTCGCACGGGCGCTACTGTCTGATTTGAACATGCTCACTCACTTCATGAACTTCCCTCCAGAATGGAAGTATAACTACTGCATGGAAGTCCTTGGTAGCGCACCCAAACAACCTAGGCAACCATGATCCTTCTCCTACTCTTTCGAAGACTATGAAAAACTATCTTCCTGTTCAAGACTATTACTACTTTCTTTCGTATTATTAGAGCCACTTATGCATGTTTGATGCATGCTTTGAAAATTCTATCTTATTGTCATGGTATTATGTTGGATATTAATGTGCTTATATCCTTATGCAACAACTTGATTTTGTTTTTTAATTTTTGCATGAAGCATCTTCCATATTA

mRNA sequence

TTAACCTTTATTTAACGTTTGAAGAAAACAAAATATTTTTACAGACTACATCCACCCCTCCGTTTTCTATCCAGACAAACTAAGGTAGATCGAAGTCGCAACGCCAAGCGCGTACACTGCGACCACAGTCCCAACCAGGTCCTTTCCAGACCCAGTCACAGCGCCGATTCCCGCGATTCCGGCGATTCCGACCGGGACTCGAAACATCACCTCTCTTCCAACGTTCTTCGCCACAGCCTCTGCGAATAGTTCGACCGCCCAACGCTTGAAGCGGGTCGGGCCTAGGGTTTCGTCTTCGCGGTCCGAATCCTCGCGATTGAGGGCTCGGAGGGCTGAGTCGACCTGGAGCCGAGTCGGGGGAGAGGGAAGCCACCTGGCGATGAGGGGATTTGGCTGGACGGCGGTGAGAAGGTGGTGGAGGTGGTCGGCGGCGGCGCAGAGTTGGTAGGGGAAAACGCCGCCGTATGCGTGCTGAGTTAGGGCGAGGCAGTGGGAGAAGGTTGAATTGCAGGCTGAGTCGAATTCGGGCGAGTTTGAAAATGACAGCATTGGGATTAGGATCCAAGAAGGAGAAACATGTCTGGACACCGGAGGTGGACACAATCCTTGTGCAATGCCTAGTCCACTTGGTACAGATAGGAGGTTGGCGTAGAGATAATGGGACATTTTGACCAGGATTCCAGAACCAGATTGGGAAGATGATGAAAGAATGATTGCCATGTTGCAACATAGTTGTCAACCCAAATATTGAGTCCAGCTCCTGAAAAAACAATACATAGGAATTGTTGAGATGATGGGACCAGCTTGTAGTGGGTTTGGGTGGAACGAGGAGAGGAAGTGCATCGAGGCAGAGAAGATCTTTGATGCGTGGGTCGAGGCTAAGGGGTCTCTAAAACCAGTCATTCCCTTGGTCTAATGAGCTGGCACTAGTGTTTGGGAAGGACAGTGCGAGAGGGAGCTCGCACTCCTATTGAGCTTACACCGGAACCGAAACCGGTAGTCCATCTTGAAGAGGACATGAACGTAGACTACGAAAATTGTTACGTCCCCAGTCCACCTGTTATTGATCCCACATATGGGGAAGAATTCTGTGGGACACTGACTAGCAAAGCAGTTGATGCAGGATTGTTTAAGACACTGCATAGGTGACGGTTGTCCATGGGAAACATGGCCGAGGTCTTGGAGAAAGGATTCCAACTAACTGCACAGCAGATTGAAAAGATTGCATTGTGGCTGACGAGGAAGGATGAGATGAAGCAAAATCGTCGGAAGGAGTTGTATGCAGAGCTGCAGTCGATACCTGGAGTGTCTATGGACGATGGCCTGGTGGTCGCACGGGCGCTACTGTCTGATTTGAACATGCTCACTCACTTCATGAACTTCCCTCCAGAATGGAAGTATAACTACTGCATGGAAGTCCTTGGTAGCGCACCCAAACAACCTAGGCAACCATGATCCTTCTCCTACTCTTTCGAAGACTATGAAAAACTATCTTCCTGTTCAAGACTATTACTACTTTCTTTCGTATTATTAGAGCCACTTATGCATGTTTGATGCATGCTTTGAAAATTCTATCTTATTGTCATGGTATTATGTTGGATATTAATGTGCTTATATCCTTATGCAACAACTTGATTTTGTTTTTTAATTTTTGCATGAAGCATCTTCCATATTA

Coding sequence (CDS)

ATGGGAAACATGGCCGAGGTCTTGGAGAAAGGATTCCAACTAACTGCACAGCAGATTGAAAAGATTGCATTGTGGCTGACGAGGAAGGATGAGATGAAGCAAAATCGTCGGAAGGAGTTGTATGCAGAGCTGCAGTCGATACCTGGAGTGTCTATGGACGATGGCCTGGTGGTCGCACGGGCGCTACTGTCTGATTTGAACATGCTCACTCACTTCATGAACTTCCCTCCAGAATGGAAGTATAACTACTGCATGGAAGTCCTTGGTAGCGCACCCAAACAACCTAGGCAACCATGA

Protein sequence

MGNMAEVLEKGFQLTAQQIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTHFMNFPPEWKYNYCMEVLGSAPKQPRQP
Homology
[Close]
BLAST of Lcy10g007890 vs. ExPASy TrEMBL
Match: A0A5A7VG45 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00220 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.1e-14
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = 0 

Query: 2   GNMAEVLEKGFQLTAQQIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARA 61
           G++ +      + T+++I KIA W   K E++ +  K LY ELQ+IPG+ +DD L+VA +
Sbjct: 457 GDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYTELQTIPGMDVDDCLIVAES 516

Query: 62  LLSDLNMLTHFMNFPPEWKYNYCMEVLGSAP 93
           LL D  ML  F+++P EWKY  CM +LG  P
Sbjct: 517 LLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 547

[Close]
BLAST of Lcy10g007890 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 0 

Query: 2   GNMAEVLEKGFQLTAQQIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARA 61
           G++ +      + T+++I KIA W   K E++ +  K LY +LQ+IPG+ +DD L+VA +
Sbjct: 171 GDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDVDDCLIVAES 230

Query: 62  LLSDLNMLTHFMNFPPEWKYNYCMEVLGSAP 93
           LL D  ML  F+++P EWKY  CM +LG  P
Sbjct: 231 LLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 261

[Close]
BLAST of Lcy10g007890 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 2   GNMAEVLEKGFQLTAQQIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARA 61
           G++ +      + T+++I KIA W   K E++ +  K LYAELQ+IPG+ +DD L+VA +
Sbjct: 321 GDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAES 380

Query: 62  LLSDLNMLTHFMNFP 77
           LL D  ML  F+++P
Sbjct: 381 LLPDPTMLHAFLDYP 395

[Close]
BLAST of Lcy10g007890 vs. ExPASy TrEMBL
Match: A0A5D3CKC1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00580 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.6e-06
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 15  TAQQIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTHFMN 74
           T+++I KI  W   K E++ +  K LYAELQ+IPG+ +DD L+V  +LL D  ML  F+N
Sbjct: 143 TSKEIRKITAWQREKMEIESSIHKRLYAELQTIPGMDVDDCLIVVESLLPDPIMLHTFLN 202

Query: 75  FP 77
           +P
Sbjct: 203 YP 204

[Close]
BLAST of Lcy10g007890 vs. ExPASy TrEMBL
Match: A0A5A7VGQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00930 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.6e-06
Identity = 29/74 (39.19%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 3   NMAEVLEKGFQLTAQQIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARAL 62
           ++ +      + T+++I KIA W   K E++ +  K LYAELQ+IPG+ +DD L+V  +L
Sbjct: 131 DLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQTIPGMDVDDCLIVVESL 190

Query: 63  LSDLNMLTHFMNFP 77
           L D  ML  F+++P
Sbjct: 191 LPDPIMLHTFLDYP 204

[Close]
BLAST of Lcy10g007890 vs. NCBI nr
Match: KAA0065306.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = 0 

Query: 2   GNMAEVLEKGFQLTAQQIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARA 61
           G++ +      + T+++I KIA W   K E++ +  K LY ELQ+IPG+ +DD L+VA +
Sbjct: 457 GDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYTELQTIPGMDVDDCLIVAES 516

Query: 62  LLSDLNMLTHFMNFPPEWKYNYCMEVLGSAP 93
           LL D  ML  F+++P EWKY  CM +LG  P
Sbjct: 517 LLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 547

[Close]
BLAST of Lcy10g007890 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.8e-13
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 0 

Query: 2   GNMAEVLEKGFQLTAQQIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARA 61
           G++ +      + T+++I KIA W   K E++ +  K LY +LQ+IPG+ +DD L+VA +
Sbjct: 171 GDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDVDDCLIVAES 230

Query: 62  LLSDLNMLTHFMNFPPEWKYNYCMEVLGSAP 93
           LL D  ML  F+++P EWKY  CM +LG  P
Sbjct: 231 LLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 261

[Close]
BLAST of Lcy10g007890 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 2   GNMAEVLEKGFQLTAQQIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARA 61
           G++ +      + T+++I KIA W   K E++ +  K LYAELQ+IPG+ +DD L+VA +
Sbjct: 321 GDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAES 380

Query: 62  LLSDLNMLTHFMNFP 77
           LL D  ML  F+++P
Sbjct: 381 LLPDPTMLHAFLDYP 395

[Close]
BLAST of Lcy10g007890 vs. NCBI nr
Match: TYK10886.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 7.3e-06
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 15  TAQQIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTHFMN 74
           T+++I KI  W   K E++ +  K LYAELQ+IPG+ +DD L+V  +LL D  ML  F+N
Sbjct: 143 TSKEIRKITAWQREKMEIESSIHKRLYAELQTIPGMDVDDCLIVVESLLPDPIMLHTFLN 202

Query: 75  FP 77
           +P
Sbjct: 203 YP 204

[Close]
BLAST of Lcy10g007890 vs. NCBI nr
Match: XP_008460440.1 (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 9.6e-06
Identity = 29/74 (39.19%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 3   NMAEVLEKGFQLTAQQIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARAL 62
           ++ +      + T+++I KIA W   K E++ +  K LYAELQ+IPG+ +DD L+V  +L
Sbjct: 130 DLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQTIPGMDVDDCLIVVESL 189

Query: 63  LSDLNMLTHFMNFP 77
           L D  ML  F+++P
Sbjct: 190 LPDPIMLHTFLDYP 203

The following BLAST results are available for this feature:
BLAST of Lcy10g007890 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy10g007890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VG456.1e-1442.86Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U7F71.3e-1341.76Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C7T41.4e-0741.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CKC13.6e-0646.77Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VGQ04.6e-0639.19Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Lcy10g007890 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065306.11.2e-1342.86retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0050106.12.8e-1341.76retrotransposon protein [Cucumis melo var. makuwa][more]
TYK07921.13.0e-0741.33hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa][more]
TYK10886.17.3e-0646.77retrotransposon protein [Cucumis melo var. makuwa][more]
XP_008460440.19.6e-0639.19PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo][more]
BLAST of Lcy10g007890 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g007890.1Lcy10g007890.1mRNA