Lcy10g007450 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g007450
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr10: 31001990 .. 31003122 (-)
RNA-Seq ExpressionLcy10g007450
SyntenyLcy10g007450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCAAACTCAAGAATTCAAGGCAAAATGGCATATTCAGACGACCAAATCGCCAAGCAAAAACATAGAAAGAAAGAATCAAAGAACAACAACTTCTTCAGATAAATCCAACCCAAATTAATCACCTGAAAATTCAGCAAAATGACTGAGAAAAATACGATAAGTGGGTTTGCATTAACCATGGAAAATGCTTGAAAGCTACATTAAAATAAAAGAAAATGTACTGCAGAGTTTTGAAAGTAATGAGTTCTAAATAGATACAACCATATGATTATTAGGAGGAAAATTCAAAAGATTTAGCTCAACAAGAGCAAGGAGTATTCAAACTTTGGAATAACAAAAATATACACAAGGAAAACAACAACCGAAATAAAAATAGACTTCCAATCAACCATTGTTCTTCCAAAACACTAGAAGTCAACGGAAGAACGATGAAGATTAGCTCGACATACAAAATGTTCTTCCGGAACAGAGGCAAAGGAATTTAACATTAACTTAGAAAAAATTCAGAACAACCGAAAATCATAATATACTCAAAAAAAGAATTCACAATCACCGTTACTGGAGGCCAATCGCCGGCCGTGAACTAACCGATCCCAGTGGACAATCTCTCCAACTGTCCAGAATTGCAAAGGCACACTAGTTGTGACCAAAATAACAGATGTGAACCAACTAAGGTACTCCCTTAGTTATGAAATCAAGAGTCAGTAGGTTGCTTGTCAACTATGAGTGTTTTTGTCATAGTTCAATATATATGTCGACTGCAACTTTCATATTCATAAATCATGCCTCCACCTTCCTCTTGAAATCCGGAGACACTGTCTTCATCCCCAACATCCTCTTCATCTGAAGTTAGATAGTAGTAGCCTCGGCTGTAACGTCTGTGGTCAAATGTCGTCGGGGAGTGATCAGGTTTATGATTGCCGGAAATGCAAATTTAAAGTGGACATCGAATGCGGCATCTCCGACGTAAAAGCCAATGGCAGCAGTTTAAGGCAGATGGGCAATGGGAAGTTTCAACATTTCAGCCACCCGCATCCCCTCAGAACGAAGCCGCCTCGCCACTCCTCAGCCGGCCTGCAAGAAGGAAAGCAGAATTGCGAACGGCCACGCCATGGACGCCGATAAAAAATTT

mRNA sequence

CCCAAACTCAAGAATTCAAGGCAAAATGGCATATTCAGACGACCAAATCGCCAAGCAAAAACATAGAAAGAAAGAATCAAAGAACAACAACTTCTTCAGATAAATCCAACCCAAATTAATCACCTGAAAATTCAGCAAAATGACTGAGAAAAATACGATAAGTGGGTTTGCATTAACCATGGAAAATGCTTGAAAGCTACATTAAAATAAAAGAAAATGTACTGCAGAGTTTTGAAAGTAATGAGTTCTAAATAGATACAACCATATGATTATTAGGAGGAAAATTCAAAAGATTTAGCTCAACAAGAGCAAGGAGTATTCAAACTTTGGAATAACAAAAATATACACAAGGAAAACAACAACCGAAATAAAAATAGACTTCCAATCAACCATTGTTCTTCCAAAACACTAGAAGTCAACGGAAGAACGATGAAGATTAGCTCGACATACAAAATGTTCTTCCGGAACAGAGGCAAAGGAATTTAACATTAACTTAGAAAAAATTCAGAACAACCGAAAATCATAATATACTCAAAAAAAGAATTCACAATCACCGTTACTGGAGGCCAATCGCCGGCCGTGAACTAACCGATCCCAGTGGACAATCTCTCCAACTGTCCAGAATTGCAAAGGCACACTAGTTGTGACCAAAATAACAGATGTGAACCAACTAAGGTACTCCCTTAGTTATGAAATCAAGAGTCAGTAGGTTGCTTGTCAACTATGAGTGTTTTTGTCATAGTTCAATATATATGTCGACTGCAACTTTCATATTCATAAATCATGCCTCCACCTTCCTCTTGAAATCCGGAGACACTGTCTTCATCCCCAACATCCTCTTCATCTGAAGTTAGATAGTAGTAGCCTCGGCTGTAACGTCTGTGGTCAAATGTCGTCGGGGAGTGATCAGGTTTATGATTGCCGGAAATGCAAATTTAAAGTGGACATCGAATGCGGCATCTCCGACGTAAAAGCCAATGGCAGCAGTTTAAGGCAGATGGGCAATGGGAAGTTTCAACATTTCAGCCACCCGCATCCCCTCAGAACGAAGCCGCCTCGCCACTCCTCAGCCGGCCTGCAAGAAGGAAAGCAGAATTGCGAACGGCCACGCCATGGACGCCGATAAAAAATTT

Coding sequence (CDS)

ATGTCGTCGGGGAGTGATCAGGTTTATGATTGCCGGAAATGCAAATTTAAAGTGGACATCGAATGCGGCATCTCCGACGTAAAAGCCAATGGCAGCAGTTTAAGGCAGATGGGCAATGGGAAGTTTCAACATTTCAGCCACCCGCATCCCCTCAGAACGAAGCCGCCTCGCCACTCCTCAGCCGGCCTGCAAGAAGGAAAGCAGAATTGCGAACGGCCACGCCATGGACGCCGATAA

Protein sequence

MSSGSDQVYDCRKCKFKVDIECGISDVKANGSSLRQMGNGKFQHFSHPHPLRTKPPRHSSAGLQEGKQNCERPRHGRR
Homology
[Close]
BLAST of Lcy10g007450 vs. ExPASy TrEMBL
Match: A0A5A7TIW3 (Putative Cysteine/Histidine-rich C1 domain family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00610 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.8e-06
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 5   SDQVYDCRKCKFKVDIECGISDVKANGSSLRQMGNGKFQHFSHPHPL 52
           S  VY CRKC F++DI+C ++D K++G  LR++   +F+HFSHPHPL
Sbjct: 91  SGDVYRCRKCNFQIDIKCVLTDTKSSG--LRRISGDQFRHFSHPHPL 135

[Close]
BLAST of Lcy10g007450 vs. ExPASy TrEMBL
Match: A0A0A0LDB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G859620 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.8e-06
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 5   SDQVYDCRKCKFKVDIECGISDVKANGSSLRQMGNGKFQHFSHPHPL 52
           S  VY CRKC F++DI+C ++D K++G  LR++   +F+HFSHPHPL
Sbjct: 91  SGDVYRCRKCNFQIDIKCVLTDTKSSG--LRRISGDQFRHFSHPHPL 135

[Close]
BLAST of Lcy10g007450 vs. ExPASy TrEMBL
Match: A0A6J1ID94 (uncharacterized protein LOC111474927 OS=Cucurbita maxima OX=3661 GN=LOC111474927 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-05
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 5   SDQVYDCRKCKFKVDIECGISDVKANGSSLRQMGNGKFQHFSHPHPL 52
           S  VY CR C F++D++C I+D KA+G  +RQ  + +F+HFSHPH L
Sbjct: 89  SGDVYLCRSCGFQIDVKCAIADTKASG--VRQTSDNEFRHFSHPHTL 133

[Close]
BLAST of Lcy10g007450 vs. ExPASy TrEMBL
Match: A0A6J1F942 (uncharacterized protein LOC111443441 OS=Cucurbita moschata OX=3662 GN=LOC111443441 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-05
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 5   SDQVYDCRKCKFKVDIECGISDVKANGSSLRQMGNGKFQHFSHPHPL 52
           S  VY CR C F++D++C I+D KA+G  +RQ  + +F+HFSHPH L
Sbjct: 156 SGDVYLCRSCGFQIDVKCAIADTKASG--VRQTSDNEFRHFSHPHTL 200

[Close]
BLAST of Lcy10g007450 vs. ExPASy TrEMBL
Match: A0A6J1DQ81 (uncharacterized protein LOC111022535 OS=Momordica charantia OX=3673 GN=LOC111022535 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.1e-05
Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 0 

Query: 7   QVYDCRKCKFKVDIECGISDVKANGSSLRQMGNGKFQHFSHPHPL 52
           ++Y+CR C F +D++C I D KA+G      G G+++HF+HPHPL
Sbjct: 107 KLYECRYCSFIIDLQCAIVDTKASGLQQIPGGTGQYRHFAHPHPL 151

[Close]
BLAST of Lcy10g007450 vs. NCBI nr
Match: KGN60121.2 (hypothetical protein Csa_000943 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 5.8e-06
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 5   SDQVYDCRKCKFKVDIECGISDVKANGSSLRQMGNGKFQHFSHPHPL 52
           S  VY CRKC F++DI+C ++D K++G  LR++   +F+HFSHPHPL
Sbjct: 91  SGDVYRCRKCNFQIDIKCVLTDTKSSG--LRRISGDQFRHFSHPHPL 135

[Close]
BLAST of Lcy10g007450 vs. NCBI nr
Match: XP_011652423.1 (uncharacterized protein LOC105435021 isoform X1 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 5.8e-06
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 5   SDQVYDCRKCKFKVDIECGISDVKANGSSLRQMGNGKFQHFSHPHPL 52
           S  VY CRKC F++DI+C ++D K++G  LR++   +F+HFSHPHPL
Sbjct: 91  SGDVYRCRKCNFQIDIKCVLTDTKSSG--LRRISGDQFRHFSHPHPL 135

[Close]
BLAST of Lcy10g007450 vs. NCBI nr
Match: XP_031738575.1 (uncharacterized protein LOC105435021 isoform X2 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 5.8e-06
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 5   SDQVYDCRKCKFKVDIECGISDVKANGSSLRQMGNGKFQHFSHPHPL 52
           S  VY CRKC F++DI+C ++D K++G  LR++   +F+HFSHPHPL
Sbjct: 91  SGDVYRCRKCNFQIDIKCVLTDTKSSG--LRRISGDQFRHFSHPHPL 135

[Close]
BLAST of Lcy10g007450 vs. NCBI nr
Match: KAA0041587.1 (putative Cysteine/Histidine-rich C1 domain family protein [Cucumis melo var. makuwa] >TYK19669.1 putative Cysteine/Histidine-rich C1 domain family protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 5.8e-06
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 5   SDQVYDCRKCKFKVDIECGISDVKANGSSLRQMGNGKFQHFSHPHPL 52
           S  VY CRKC F++DI+C ++D K++G  LR++   +F+HFSHPHPL
Sbjct: 91  SGDVYRCRKCNFQIDIKCVLTDTKSSG--LRRISGDQFRHFSHPHPL 135

[Close]
BLAST of Lcy10g007450 vs. NCBI nr
Match: XP_038904483.1 (uncharacterized protein LOC120090853 [Benincasa hispida])

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-05
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 5   SDQVYDCRKCKFKVDIECGISDVKANGSSLRQMGNGKFQHFSHPHPLRT 54
           S +VY C  C F +D++C I+  KA+G  L +M NGKF+HF+HPHPL T
Sbjct: 93  SGKVYSCLTCGFHIDLQCLIAKTKASG--LCEMPNGKFRHFAHPHPLTT 139

The following BLAST results are available for this feature:
BLAST of Lcy10g007450 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy10g007450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TIW32.8e-0653.19Putative Cysteine/Histidine-rich C1 domain family protein OS=Cucumis melo var. m... [more]
A0A0A0LDB72.8e-0653.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G859620 PE=3 SV=1[more]
A0A6J1ID943.1e-0551.06uncharacterized protein LOC111474927 OS=Cucurbita maxima OX=3661 GN=LOC111474927... [more]
A0A6J1F9423.1e-0551.06uncharacterized protein LOC111443441 OS=Cucurbita moschata OX=3662 GN=LOC1114434... [more]
A0A6J1DQ814.1e-0546.67uncharacterized protein LOC111022535 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
BLAST of Lcy10g007450 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60121.25.8e-0653.19hypothetical protein Csa_000943 [Cucumis sativus][more]
XP_011652423.15.8e-0653.19uncharacterized protein LOC105435021 isoform X1 [Cucumis sativus][more]
XP_031738575.15.8e-0653.19uncharacterized protein LOC105435021 isoform X2 [Cucumis sativus][more]
KAA0041587.15.8e-0653.19putative Cysteine/Histidine-rich C1 domain family protein [Cucumis melo var. mak... [more]
XP_038904483.12.2e-0553.06uncharacterized protein LOC120090853 [Benincasa hispida][more]
BLAST of Lcy10g007450 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g007450.1Lcy10g007450.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031347 regulation of defense response
biological_process GO:2000022 regulation of jasmonic acid mediated signaling pathway
biological_process GO:0009611 response to wounding
cellular_component GO:0005634 nucleus
molecular_function GO:0005488 binding