Lcy10g007260 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g007260
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotransposon protein
Location	Chr10: 30413268 .. 30415451 (+)
RNA-Seq Expression	Lcy10g007260
Synteny	Lcy10g007260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACATATGTTTTACTTCTTTTTTTCTTATCCAATGTCTTTATTTCTACATTGGTTCCTAATTTATTTACTTTATTTTGTAGGCCTTCTTTTCATACTCTAGGCCAGGCCAGTCAGTGCACCTTGAAGCCCGTCACTTTCCTAACGTAATTTTTATTCAATCCGCTGTGTTCTATGTTTTTTAAGTAGCGATGACATTGTTGTTTATAGAATTTGCTAAGAACTCCAACTATTGTATATTATGGAATTTGTTAGGTTTCATTTTTTAGAATGTTTGCTTTGGTGGATTTTTCTTTTCTTTTACCAATTTTTATGATATTTACATTTGAGTTTTATTTGTATGTTATAAGAGTCACAAATTTTTGTTTTGTATGGATGTACATTTGTGTTATGTTTTTTTCGTACAATATTTACAATTGACAATTTAGGACTACTGTTTAGAAAAAAAAATATTACTACTGTTTAAAAAAAAATCTATTGTGTAAGAAAAAAATGTTTCTAATGCTTTAAAGTGAATTAAACTAGGACTTGACAAAAAAACTTGTTCAAGTAGATGAAAAAAAAAAAGCCTAAGTTTGAAAAAAAGTCTAAGTTTGAAACAATAATATGTGGTTACAATAGATTTGGAATCAAAATTGTTTTTTTTTATTTTTAAATAGATTCAATTATTAATGTATTTTTAATGATGAGTCATTTTAATAAAGTTAGCTTATTTTGATAAAGTTGCTACATTTTTAAAGGTACACAACTGTTTTAAAAATAATTAAATGATCAAATATATAAAATAACCAAAGTACACAAACTAAAAAATGTGTATTAATATAAATTTTCCAAAATATTTGTAGAATTTTTTTTGCTCGATAACATCATTATCATTACAAGTGACTAGAATTAAAAACAATGACTAAATAGTAGTAAGTTACTTTAATTGGTGCAACCAGTATACAAGTAATATAAAAACAAAGATTATTGTCCAATTCGTTGGATCAAACAAATTAATGAATTAAAACTTTATAAATTAGTTTTTGCCAACTAGTACCTTTTTTTTCTTTTTTTCTTTTTTTATAGATTTGTTTTTTCAGTCACAATAATCCTTTATAAAGCAATGGTCCTTGCTTTTTTTTTTTTTTTTAACTAATTTCTATATTGCTACTGTGTAAAGAAAAAAGTGAAATAAACTAGGACTTCAAAAAATGTATTTGAAAAAAGTGAAATAAACTAGGACTTCAAAAAATGTATTTGAAAAATTAATACATAATTACACTTTGCCATATAGATGGATTTGGAATCAATTTTTTTTTTTTAAAGCAATGGATTCAATTATTATGTATTTTTAAGAATGGGTCATTCTAATAAACTTAGATTATTTGTAATGATAAAAAAGTAGTCAAAAATATGTTTTTAGACTATCTTACGCAATATAATTTTAGGTTAAGTGCTTAAAATTAAAATTAGTCGGAAATATGTTTTTAGCCTATTAAAATGAACTTAGGCAATATATTTTTAGATTAAGAGAACTTAGGCAATATACAGCTAACTTCGGTACAATAACCCTCATGTTAATGTAGATGGCATCATCCACTTCGAAAGCCCGAAACATATCTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGCTTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGTTGACAACGGGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCTCGACCTTGGAGTACAAAGTGACGATCCTAAAAAGGCAATACGGTGCCATTGTCAAAATGATGGGTCCCACCTGCAGTGGTTTTTGGTGGAATGATGAGCGAAAGTGCATTGAGGCGGAGAAATCAGTCTTTGATGATTGGGTTAGGGTAAGAATTCGAACATGATCTACATAGAATTCAAAAATGTTATATGATTATATAGGTTAATTGTGTTAACATGTTGAATATAGGTACACCCACATGCCCGACGTATGAGGAACAAGTCATTCCCCTACTTCGACGACCTAGCAATTGTGTTCGGGAAGGATAGGGATAATGGAGAAGGTGCTTTGACTCCGAAAGAAGTGGCTACCGATCTGGATAAGGGCTGCATGTGTATCTTGGGAAGGCAACCATGACCCTACTACCTCTGAAATTTGCTCG

mRNA sequence

ATACATATGTTTTACTTCTTTTTTTCTTATCCAATGTCTTTATTTCTACATTGGTTCCTAATTTATTTACTTTATTTTGTAGGCCTTCTTTTCATACTCTAGGCCAGGCCAGTCAGTGCACCTTGAAGCCCGTCACTTTCCTAACATGGCATCATCCACTTCGAAAGCCCGAAACATATCTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGCTTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGTTGACAACGGGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCTCGACCTTGGAGTACAAAGTGACGATCCTAAAAAGGCAATACGGTGCCATTGTCAAAATGATGGGTCCCACCTGCAGTGGTTTTTGGTGGAATGATGAGCGAAAGTGCATTGAGGCGGAGAAATCAGTCTTTGATGATTGGGTTAGGGTACACCCACATGCCCGACGTATGAGGAACAAGTCATTCCCCTACTTCGACGACCTAGCAATTGTGTTCGGGAAGGATAGGGATAATGGAGAAGGTGCTTTGACTCCGAAAGAAGTGGCTACCGATCTGGATAAGGGCTGCATGTGTATCTTGGGAAGGCAACCATGACCCTACTACCTCTGAAATTTGCTCG

Coding sequence (CDS)

ATGGAGGATGAAGTTTTGGTCCAGTGCTTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGTTGACAACGGGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCTCGACCTTGGAGTACAAAGTGACGATCCTAAAAAGGCAATACGGTGCCATTGTCAAAATGATGGGTCCCACCTGCAGTGGTTTTTGGTGGAATGATGAGCGAAAGTGCATTGAGGCGGAGAAATCAGTCTTTGATGATTGGGTTAGGGTACACCCACATGCCCGACGTATGAGGAACAAGTCATTCCCCTACTTCGACGACCTAGCAATTGTGTTCGGGAAGGATAGGGATAATGGAGAAGGTGCTTTGACTCCGAAAGAAGTGGCTACCGATCTGGATAAGGGCTGCATGTGTATCTTGGGAAGGCAACCATGA

Protein sequence

MEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGALTPKEVATDLDKGCMCILGRQP

Homology

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BLAST of Lcy10g007260 vs. ExPASy Swiss-Prot
Match: O82368 (Uncharacterized protein At2g29880 OS=Arabidopsis thaliana OX=3702 GN=At2g29880 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-05
Identity = 29/115 (25.22%), Postives = 53/115 (46.09%), Query Frame = 0


Query: 18  GWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSG 77
           GW+  NGT     +++ +  +  K  +C+   T+ L  ++  +K++Y     +     SG
Sbjct: 41  GWRDKNGTISKTTVERKILPLLNKKFKCNKTYTNYLS-RMKSMKKEYSVYAALFW-FSSG 100

Query: 78  FWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGA 133
           F W+   K   A   V+  ++  HP+   MR  +F  F+DL ++F      G  A
Sbjct: 101 FGWDPITKQFTAPDDVWAAYLMGHPNHHHMRTSTFEDFEDLQLIFESAIAKGNNA 153

[Close]

BLAST of Lcy10g007260 vs. ExPASy TrEMBL
Match: A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 9.8e-43
Identity = 88/140 (62.86%), Postives = 104/140 (74.29%), Query Frame = 0


Query: 1   MEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTIL 60
           +EDE LV+CLLQLV+ G W+VDNGTF+ GYL QV KLMKEK+   +IQVT  LE  V IL
Sbjct: 101 IEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKIL 160

Query: 61  KRQYGAIVKMMGPTCSGFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAI 120
           K+QY  I +MMGP CSGF WN ERKCIEAEKSV +DWV+ H +AR + NK FPYF DL I
Sbjct: 161 KKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEI 220

Query: 121 VFGKDRDNGEGALTPKEVAT 141
           VFG+DR  G    TP E+ +
Sbjct: 221 VFGRDRATGGKCKTPVEMGS 240

[Close]

BLAST of Lcy10g007260 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 9.8e-43
Identity = 88/140 (62.86%), Postives = 104/140 (74.29%), Query Frame = 0


Query: 1   MEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTIL 60
           +EDE LV+CLLQLV+ G W+VDNGTF+ GYL QV KLMKEK+   +IQVT  LE  V IL
Sbjct: 101 IEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKIL 160

Query: 61  KRQYGAIVKMMGPTCSGFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAI 120
           K+QY  I +MMGP CSGF WN ERKCIEAEKSV +DWV+ H +AR + NK FPYF DL I
Sbjct: 161 KKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEI 220

Query: 121 VFGKDRDNGEGALTPKEVAT 141
           VFG+DR  G    TP E+ +
Sbjct: 221 VFGRDRATGGKCKTPVEMGS 240

[Close]

BLAST of Lcy10g007260 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 6.3e-42
Identity = 83/129 (64.34%), Postives = 101/129 (78.29%), Query Frame = 0


Query: 1   MEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTIL 60
           ++D+ LV+CLLQLV+ GGW+ +N TF+  YL QV KLMKEK+PR +IQVT  LE +V  L
Sbjct: 16  IKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSNIQVTLNLESRVKFL 75

Query: 61  KRQYGAIVKMMGPTCSGFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAI 120
           K+QY AI KMMGP CS F WN+ERKCIEAEKSVFDDWV+ HP+AR + NK F YF DL I
Sbjct: 76  KKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARGLLNKPFAYFYDLEI 135

Query: 121 VFGKDRDNG 130
           VFG+D+  G
Sbjct: 136 VFGRDKATG 144

[Close]

BLAST of Lcy10g007260 vs. ExPASy TrEMBL
Match: A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 6.3e-42
Identity = 83/129 (64.34%), Postives = 101/129 (78.29%), Query Frame = 0


Query: 1   MEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTIL 60
           ++D+ LV+CLLQLV+ GGW+ +N TF+  YL QV KLMKEK+PR +IQVT  LE +V  L
Sbjct: 48  IKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSNIQVTLNLESRVKFL 107

Query: 61  KRQYGAIVKMMGPTCSGFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAI 120
           K+QY AI KMMGP CS F WN+ERKCIEAEKSVFDDWV+ HP+AR + NK F YF DL I
Sbjct: 108 KKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARGLLNKPFAYFYDLEI 167

Query: 121 VFGKDRDNG 130
           VFG+D+  G
Sbjct: 168 VFGRDKATG 176

[Close]

BLAST of Lcy10g007260 vs. ExPASy TrEMBL
Match: A0A5A7UNC0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00650 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.6e-40
Identity = 75/140 (53.57%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 2   EDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILK 61
           E+  LV+CL++L+ +GGWK DNGTFRSGYL Q++++M EKLP C ++ T+ ++ ++  LK
Sbjct: 16  EEGTLVECLMELMSMGGWKSDNGTFRSGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLK 75

Query: 62  RQYGAIVKMMGPTCSGFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIV 121
           R + AI +M GP CSGF WNDE KCI AEK +FD+WVR HP A+ + NK FPY+D+L  V
Sbjct: 76  RTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYV 135

Query: 122 FGKDRDNGEGALTPKEVATD 142
           FG+DR  G  A T   VA++
Sbjct: 136 FGRDRATGRFAETFANVASN 155

[Close]

BLAST of Lcy10g007260 vs. NCBI nr
Match: KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 183.0 bits (463), Expect = 2.0e-42
Identity = 88/140 (62.86%), Postives = 104/140 (74.29%), Query Frame = 0


Query: 1   MEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTIL 60
           +EDE LV+CLLQLV+ G W+VDNGTF+ GYL QV KLMKEK+   +IQVT  LE  V IL
Sbjct: 101 IEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKIL 160

Query: 61  KRQYGAIVKMMGPTCSGFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAI 120
           K+QY  I +MMGP CSGF WN ERKCIEAEKSV +DWV+ H +AR + NK FPYF DL I
Sbjct: 161 KKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEI 220

Query: 121 VFGKDRDNGEGALTPKEVAT 141
           VFG+DR  G    TP E+ +
Sbjct: 221 VFGRDRATGGKCKTPVEMGS 240

[Close]

BLAST of Lcy10g007260 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 183.0 bits (463), Expect = 2.0e-42
Identity = 88/140 (62.86%), Postives = 104/140 (74.29%), Query Frame = 0


Query: 1   MEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTIL 60
           +EDE LV+CLLQLV+ G W+VDNGTF+ GYL QV KLMKEK+   +IQVT  LE  V IL
Sbjct: 101 IEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKIL 160

Query: 61  KRQYGAIVKMMGPTCSGFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAI 120
           K+QY  I +MMGP CSGF WN ERKCIEAEKSV +DWV+ H +AR + NK FPYF DL I
Sbjct: 161 KKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEI 220

Query: 121 VFGKDRDNGEGALTPKEVAT 141
           VFG+DR  G    TP E+ +
Sbjct: 221 VFGRDRATGGKCKTPVEMGS 240

[Close]

BLAST of Lcy10g007260 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-41
Identity = 83/129 (64.34%), Postives = 101/129 (78.29%), Query Frame = 0


Query: 1   MEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTIL 60
           ++D+ LV+CLLQLV+ GGW+ +N TF+  YL QV KLMKEK+PR +IQVT  LE +V  L
Sbjct: 16  IKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSNIQVTLNLESRVKFL 75

Query: 61  KRQYGAIVKMMGPTCSGFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAI 120
           K+QY AI KMMGP CS F WN+ERKCIEAEKSVFDDWV+ HP+AR + NK F YF DL I
Sbjct: 76  KKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARGLLNKPFAYFYDLEI 135

Query: 121 VFGKDRDNG 130
           VFG+D+  G
Sbjct: 136 VFGRDKATG 144

[Close]

BLAST of Lcy10g007260 vs. NCBI nr
Match: XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-41
Identity = 83/129 (64.34%), Postives = 101/129 (78.29%), Query Frame = 0


Query: 1   MEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTIL 60
           ++D+ LV+CLLQLV+ GGW+ +N TF+  YL QV KLMKEK+PR +IQVT  LE +V  L
Sbjct: 48  IKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSNIQVTLNLESRVKFL 107

Query: 61  KRQYGAIVKMMGPTCSGFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAI 120
           K+QY AI KMMGP CS F WN+ERKCIEAEKSVFDDWV+ HP+AR + NK F YF DL I
Sbjct: 108 KKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARGLLNKPFAYFYDLEI 167

Query: 121 VFGKDRDNG 130
           VFG+D+  G
Sbjct: 168 VFGRDKATG 176

[Close]

BLAST of Lcy10g007260 vs. NCBI nr
Match: XP_024022021.1 (uncharacterized protein LOC112091787 [Morus notabilis])

HSP 1 Score: 177.6 bits (449), Expect = 8.5e-41
Identity = 75/144 (52.08%), Postives = 104/144 (72.22%), Query Frame = 0


Query: 1   MEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTIL 60
           +ED  LV+CLL +   G WK DNGTF+ GYLQQ+ K+M EK+P+C ++    ++ +V IL
Sbjct: 60  LEDSKLVECLLDMANSGKWKADNGTFKPGYLQQLEKMMNEKIPQCGLKAQPHIDSRVKIL 119

Query: 61  KRQYGAIVKMMGPTCSGFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAI 120
           K+QY AI +M+GP  SGF WND+ KC+  EK VFD+WV+ HP A+ +RNK FPY D+L +
Sbjct: 120 KKQYHAISEMLGPAGSGFGWNDKDKCVVVEKDVFDEWVKSHPSAKGLRNKPFPYHDELGL 179

Query: 121 VFGKDRDNGEGALTPKEVATDLDK 145
           VFG DR NG+GA+   ++  D+DK
Sbjct: 180 VFGNDRANGQGAMGLTDMVDDIDK 203

[Close]

BLAST of Lcy10g007260 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-09
Identity = 36/137 (26.28%), Postives = 69/137 (50.36%), Query Frame = 0


Query: 2   EDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEY-----K 61
           E ++LVQ L++ +    W+  NGT         L +  + +P  + +   +  Y     +
Sbjct: 21  ETKLLVQLLVEGIN-NNWRDSNGTISK------LTVETKFMPEINKEFCRSKNYNHYLSR 80

Query: 62  VTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFD 121
           +  LK QY + + +     SGF W+   K   A   V+ D+++ HP+ +++R  +F +FD
Sbjct: 81  MKYLKIQYQSCLDLQ-RFSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFD 140

Query: 122 DLAIVFGKDRDNGEGAL 134
           +L I+FG+    G+ A+
Sbjct: 141 ELQIIFGEGVATGKNAI 149

[Close]

BLAST of Lcy10g007260 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-07
Identity = 31/99 (31.31%), Postives = 52/99 (52.53%), Query Frame = 0


Query: 54  EYKVTILKRQYGAIVKMMGPTCS-----GFWWNDERKCIEAEKSVFDDWVRVHPHARRMR 113
           +Y   +L+ +Y  ++K      +     GF W++ R  I A+ +V+D +++ HP AR  R
Sbjct: 217 QYGKRVLRHRYNKLLKYYKDMEAILKEDGFSWDETRLMISADDAVWDSYIKDHPLARTYR 276

Query: 114 NKSFPYFDDLAIVF------GKD-RDNGEGALTPKEVAT 141
            KS P ++DL  +F      G D RD+G  A T +  A+
Sbjct: 277 MKSLPSYNDLDTIFACQAEQGTDHRDDGSAAQTSETKAS 315

[Close]

BLAST of Lcy10g007260 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-07
Identity = 31/99 (31.31%), Postives = 52/99 (52.53%), Query Frame = 0


Query: 54  EYKVTILKRQYGAIVKMMGPTCS-----GFWWNDERKCIEAEKSVFDDWVRVHPHARRMR 113
           +Y   +L+ +Y  ++K      +     GF W++ R  I A+ +V+D +++ HP AR  R
Sbjct: 217 QYGKRVLRHRYNKLLKYYKDMEAILKEDGFSWDETRLMISADDAVWDSYIKDHPLARTYR 276

Query: 114 NKSFPYFDDLAIVF------GKD-RDNGEGALTPKEVAT 141
            KS P ++DL  +F      G D RD+G  A T +  A+
Sbjct: 277 MKSLPSYNDLDTIFACQAEQGTDHRDDGSAAQTSETKAS 315

[Close]

BLAST of Lcy10g007260 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 5.0e-07
Identity = 22/66 (33.33%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 77  GFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVF--GKDRDNGEGALT 136
           GF W+D R+ + A+  V+D+++++HP +R  R KS P + DL +V+  G      E +++
Sbjct: 88  GFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCYKDLCLVYSDGMSEHKAEESIS 147

Query: 137 PKEVAT 141
             E  T
Sbjct: 148 EGESKT 153

[Close]

BLAST of Lcy10g007260 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 52.0 bits (123), Expect = 5.0e-07
Identity = 22/66 (33.33%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 77  GFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVF--GKDRDNGEGALT 136
           GF W+D R+ + A+  V+D+++++HP +R  R KS P + DL +V+  G      E +++
Sbjct: 88  GFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCYKDLCLVYSDGMSEHKAEESIS 147

Query: 137 PKEVAT 141
             E  T
Sbjct: 148 EGESKT 153

The following BLAST results are available for this feature:

BLAST of Lcy10g007260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82368	1.6e-05	25.22	Uncharacterized protein At2g29880 OS=Arabidopsis thaliana OX=3702 GN=At2g29880 P...	[more]

BLAST of Lcy10g007260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SW62	9.8e-43	62.86	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DTL0	9.8e-43	62.86	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BC95	6.3e-42	64.34	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C252	6.3e-42	64.34	uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 P...	[more]
A0A5A7UNC0	1.6e-40	53.57	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lcy10g007260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033487.1	2.0e-42	62.86	uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]	[more]
TYK26842.1	2.0e-42	62.86	uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]	[more]
TYJ96933.1	1.3e-41	64.34	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008455678.1	1.3e-41	64.34	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
XP_024022021.1	8.5e-41	52.08	uncharacterized protein LOC112091787 [Morus notabilis]	[more]

BLAST of Lcy10g007260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27260.1	2.4e-09	26.28	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.1	1.7e-07	31.31	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.2	1.7e-07	31.31	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G02210.1	5.0e-07	33.33	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	5.0e-07	33.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 2..95 e-value: 7.0E-6 score: 26.9
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 2..144
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 2..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g007260.1	Lcy10g007260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane