Lcy10g006960 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g006960
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	L10-interacting MYB domain-containing protein-like
Location	Chr10: 28494281 .. 28494619 (+)
RNA-Seq Expression	Lcy10g006960
Synteny	Lcy10g006960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAGAAGTCTAAAAGAAAGAGAGGAGCATTGAGCGAGACCATGTCATCTTTTATAGATGCTTATGTAGAAAATTCAAAGAGAAGAAATGACATACTACAGAAAAGACTTCTTGGCTCTTCATCATCAGGTGATGTTAGTGAAAGTTCATCAAAATCAAAAGATTGTGTTGACGAAGAATTGGACAAATGCTTAGAAATTTTAAATAACATGGAGGATATTGATGATAAAGCTTATACCAAAGTATTGAAACGTTTGTTCGAGGACAAATCTTGGAGACAAGCATTCCTGCGCATTCCTGAATCAAGGAGGAGAGGATTTATCAATTACCTTTGA

mRNA sequence

ATGAGCAAGAAGTCTAAAAGAAAGAGAGGAGCATTGAGCGAGACCATGTCATCTTTTATAGATGCTTATGTAGAAAATTCAAAGAGAAGAAATGACATACTACAGAAAAGACTTCTTGGCTCTTCATCATCAGGTGATGTTAGTGAAAGTTCATCAAAATCAAAAGATTGTGTTGACGAAGAATTGGACAAATGCTTAGAAATTTTAAATAACATGGAGGATATTGATGATAAAGCTTATACCAAAGTATTGAAACGTTTGTTCGAGGACAAATCTTGGAGACAAGCATTCCTGCGCATTCCTGAATCAAGGAGGAGAGGATTTATCAATTACCTTTGA

Coding sequence (CDS)

ATGAGCAAGAAGTCTAAAAGAAAGAGAGGAGCATTGAGCGAGACCATGTCATCTTTTATAGATGCTTATGTAGAAAATTCAAAGAGAAGAAATGACATACTACAGAAAAGACTTCTTGGCTCTTCATCATCAGGTGATGTTAGTGAAAGTTCATCAAAATCAAAAGATTGTGTTGACGAAGAATTGGACAAATGCTTAGAAATTTTAAATAACATGGAGGATATTGATGATAAAGCTTATACCAAAGTATTGAAACGTTTGTTCGAGGACAAATCTTGGAGACAAGCATTCCTGCGCATTCCTGAATCAAGGAGGAGAGGATTTATCAATTACCTTTGA

Protein sequence

MSKKSKRKRGALSETMSSFIDAYVENSKRRNDILQKRLLGSSSSGDVSESSSKSKDCVDEELDKCLEILNNMEDIDDKAYTKVLKRLFEDKSWRQAFLRIPESRRRGFINYL

Homology

[Close]

BLAST of Lcy10g006960 vs. ExPASy TrEMBL
Match: A0A5A7UDA1 (L10-interacting MYB domain-containing protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007990 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.1e-31
Identity = 76/112 (67.86%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 1   MSKKSKRKRGALSETMSSFIDAYVENSKRRNDILQKRLLGSSSSGDVSESSSKSKDCVDE 60
           MSKKSKRKR  +++ MSSF +AYVEN KRRNDIL+ RL G  SSG+ SE+SSK++D  DE
Sbjct: 119 MSKKSKRKREIINDIMSSFKEAYVENLKRRNDILEGRLFG-LSSGEFSETSSKARDYADE 178

Query: 61  ELDKCLEILNNMEDIDDKAYTKVLKRLFEDKSWRQAFLRIPESRRRGFINYL 113
           +L+KC++ILN+M DIDDKAYTKVLK+L  D +WR+AFL IPESRRRGF+N L
Sbjct: 179 DLNKCIKILNSMVDIDDKAYTKVLKQLVADTTWRKAFLCIPESRRRGFVNNL 229

[Close]

BLAST of Lcy10g006960 vs. ExPASy TrEMBL
Match: A0A1S4DUG7 (L10-interacting MYB domain-containing protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487000 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.1e-31
Identity = 76/112 (67.86%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 1   MSKKSKRKRGALSETMSSFIDAYVENSKRRNDILQKRLLGSSSSGDVSESSSKSKDCVDE 60
           MSKKSKRKR  +++ MSSF +AYVEN KRRNDIL+ RL G  SSG+ SE+SSK++D  DE
Sbjct: 191 MSKKSKRKREIINDIMSSFKEAYVENLKRRNDILEGRLFG-LSSGEFSETSSKARDYADE 250

Query: 61  ELDKCLEILNNMEDIDDKAYTKVLKRLFEDKSWRQAFLRIPESRRRGFINYL 113
           +L+KC++ILN+M DIDDKAYTKVLK+L  D +WR+AFL IPESRRRGF+N L
Sbjct: 251 DLNKCIKILNSMVDIDDKAYTKVLKQLVADTTWRKAFLCIPESRRRGFVNNL 301

[Close]

BLAST of Lcy10g006960 vs. ExPASy TrEMBL
Match: A0A1S3B8P1 (uncharacterized protein LOC103487000 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487000 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.1e-31
Identity = 76/112 (67.86%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 1   MSKKSKRKRGALSETMSSFIDAYVENSKRRNDILQKRLLGSSSSGDVSESSSKSKDCVDE 60
           MSKKSKRKR  +++ MSSF +AYVEN KRRNDIL+ RL G  SSG+ SE+SSK++D  DE
Sbjct: 217 MSKKSKRKREIINDIMSSFKEAYVENLKRRNDILEGRLFG-LSSGEFSETSSKARDYADE 276

Query: 61  ELDKCLEILNNMEDIDDKAYTKVLKRLFEDKSWRQAFLRIPESRRRGFINYL 113
           +L+KC++ILN+M DIDDKAYTKVLK+L  D +WR+AFL IPESRRRGF+N L
Sbjct: 277 DLNKCIKILNSMVDIDDKAYTKVLKQLVADTTWRKAFLCIPESRRRGFVNNL 327

[Close]

BLAST of Lcy10g006960 vs. ExPASy TrEMBL
Match: A0A0A0LHR1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825110 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.0e-30
Identity = 76/112 (67.86%), Postives = 91/112 (81.25%), Query Frame = 0


Query: 1   MSKKSKRKRGALSETMSSFIDAYVENSKRRNDILQKRLLGSSSSGDVSESSSKSKDCVDE 60
           MSKKSKRKR  L++ MSSF +AYVEN KRRNDIL+ RL G   SG+ SE SSK +D  DE
Sbjct: 19  MSKKSKRKREVLNDIMSSFKEAYVENLKRRNDILEGRLFG-FPSGEFSEISSKERDYADE 78

Query: 61  ELDKCLEILNNMEDIDDKAYTKVLKRLFEDKSWRQAFLRIPESRRRGFINYL 113
           +L+KC++ILN+M DIDDKAYTKVLK+L  D +WR+AFL IPESRRRGF+N L
Sbjct: 79  DLNKCIKILNSMVDIDDKAYTKVLKQLVADTTWRKAFLCIPESRRRGFVNNL 129

[Close]

BLAST of Lcy10g006960 vs. ExPASy TrEMBL
Match: A0A5A7VKM6 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G00100 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.5e-21
Identity = 56/110 (50.91%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 3   KKSKRKRGALSETMSSFIDAYVENSKRRNDILQKRLLGSSSSGDVSESSSKSKDCVDEEL 62
           K+ +RK+       SSF+D Y EN+KR+N+IL+KR  G +SS      +S  KD + EEL
Sbjct: 94  KRFRRKKDEFGSFFSSFLDVYAENAKRKNNILEKRSFGCTSSQVDESQTSNKKDDLHEEL 153

Query: 63  DKCLEILNNMEDIDDKAYTKVLKRLFEDKSWRQAFLRIPESRRRGFINYL 113
            +CL+ILN MED+D +AY+K+LK L ED +WR+ FLR+P+SR+R FIN L
Sbjct: 154 MECLDILNTMEDVDGEAYSKILKLLHEDLAWRKLFLRMPDSRKRDFINSL 203

[Close]

BLAST of Lcy10g006960 vs. NCBI nr
Match: XP_008443406.1 (PREDICTED: uncharacterized protein LOC103487000 isoform X1 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 1.7e-30
Identity = 76/112 (67.86%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 1   MSKKSKRKRGALSETMSSFIDAYVENSKRRNDILQKRLLGSSSSGDVSESSSKSKDCVDE 60
           MSKKSKRKR  +++ MSSF +AYVEN KRRNDIL+ RL G  SSG+ SE+SSK++D  DE
Sbjct: 217 MSKKSKRKREIINDIMSSFKEAYVENLKRRNDILEGRLFG-LSSGEFSETSSKARDYADE 276

Query: 61  ELDKCLEILNNMEDIDDKAYTKVLKRLFEDKSWRQAFLRIPESRRRGFINYL 113
           +L+KC++ILN+M DIDDKAYTKVLK+L  D +WR+AFL IPESRRRGF+N L
Sbjct: 277 DLNKCIKILNSMVDIDDKAYTKVLKQLVADTTWRKAFLCIPESRRRGFVNNL 327

[Close]

BLAST of Lcy10g006960 vs. NCBI nr
Match: KAA0053762.1 (L10-interacting MYB domain-containing protein-like isoform X2 [Cucumis melo var. makuwa] >TYK25639.1 L10-interacting MYB domain-containing protein-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 1.7e-30
Identity = 76/112 (67.86%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 1   MSKKSKRKRGALSETMSSFIDAYVENSKRRNDILQKRLLGSSSSGDVSESSSKSKDCVDE 60
           MSKKSKRKR  +++ MSSF +AYVEN KRRNDIL+ RL G  SSG+ SE+SSK++D  DE
Sbjct: 119 MSKKSKRKREIINDIMSSFKEAYVENLKRRNDILEGRLFG-LSSGEFSETSSKARDYADE 178

Query: 61  ELDKCLEILNNMEDIDDKAYTKVLKRLFEDKSWRQAFLRIPESRRRGFINYL 113
           +L+KC++ILN+M DIDDKAYTKVLK+L  D +WR+AFL IPESRRRGF+N L
Sbjct: 179 DLNKCIKILNSMVDIDDKAYTKVLKQLVADTTWRKAFLCIPESRRRGFVNNL 229

[Close]

BLAST of Lcy10g006960 vs. NCBI nr
Match: XP_016899632.1 (PREDICTED: L10-interacting MYB domain-containing protein-like isoform X2 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 1.7e-30
Identity = 76/112 (67.86%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 1   MSKKSKRKRGALSETMSSFIDAYVENSKRRNDILQKRLLGSSSSGDVSESSSKSKDCVDE 60
           MSKKSKRKR  +++ MSSF +AYVEN KRRNDIL+ RL G  SSG+ SE+SSK++D  DE
Sbjct: 191 MSKKSKRKREIINDIMSSFKEAYVENLKRRNDILEGRLFG-LSSGEFSETSSKARDYADE 250

Query: 61  ELDKCLEILNNMEDIDDKAYTKVLKRLFEDKSWRQAFLRIPESRRRGFINYL 113
           +L+KC++ILN+M DIDDKAYTKVLK+L  D +WR+AFL IPESRRRGF+N L
Sbjct: 251 DLNKCIKILNSMVDIDDKAYTKVLKQLVADTTWRKAFLCIPESRRRGFVNNL 301

[Close]

BLAST of Lcy10g006960 vs. NCBI nr
Match: KAE8651219.1 (hypothetical protein Csa_000986 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 8.3e-30
Identity = 76/112 (67.86%), Postives = 91/112 (81.25%), Query Frame = 0


Query: 1   MSKKSKRKRGALSETMSSFIDAYVENSKRRNDILQKRLLGSSSSGDVSESSSKSKDCVDE 60
           MSKKSKRKR  L++ MSSF +AYVEN KRRNDIL+ RL G   SG+ SE SSK +D  DE
Sbjct: 217 MSKKSKRKREVLNDIMSSFKEAYVENLKRRNDILEGRLFG-FPSGEFSEISSKERDYADE 276

Query: 61  ELDKCLEILNNMEDIDDKAYTKVLKRLFEDKSWRQAFLRIPESRRRGFINYL 113
           +L+KC++ILN+M DIDDKAYTKVLK+L  D +WR+AFL IPESRRRGF+N L
Sbjct: 277 DLNKCIKILNSMVDIDDKAYTKVLKQLVADTTWRKAFLCIPESRRRGFVNNL 327

[Close]

BLAST of Lcy10g006960 vs. NCBI nr
Match: XP_031738598.1 (L10-interacting MYB domain-containing protein [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 8.3e-30
Identity = 76/112 (67.86%), Postives = 91/112 (81.25%), Query Frame = 0


Query: 1   MSKKSKRKRGALSETMSSFIDAYVENSKRRNDILQKRLLGSSSSGDVSESSSKSKDCVDE 60
           MSKKSKRKR  L++ MSSF +AYVEN KRRNDIL+ RL G   SG+ SE SSK +D  DE
Sbjct: 191 MSKKSKRKREVLNDIMSSFKEAYVENLKRRNDILEGRLFG-FPSGEFSEISSKERDYADE 250

Query: 61  ELDKCLEILNNMEDIDDKAYTKVLKRLFEDKSWRQAFLRIPESRRRGFINYL 113
           +L+KC++ILN+M DIDDKAYTKVLK+L  D +WR+AFL IPESRRRGF+N L
Sbjct: 251 DLNKCIKILNSMVDIDDKAYTKVLKQLVADTTWRKAFLCIPESRRRGFVNNL 301

The following BLAST results are available for this feature:

BLAST of Lcy10g006960 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g006960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UDA1	8.1e-31	67.86	L10-interacting MYB domain-containing protein-like isoform X2 OS=Cucumis melo va...	[more]
A0A1S4DUG7	8.1e-31	67.86	L10-interacting MYB domain-containing protein-like isoform X2 OS=Cucumis melo OX...	[more]
A0A1S3B8P1	8.1e-31	67.86	uncharacterized protein LOC103487000 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LHR1	4.0e-30	67.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825110 PE=4 SV=1	[more]
A0A5A7VKM6	4.5e-21	50.91	L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa O...	[more]

BLAST of Lcy10g006960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443406.1	1.7e-30	67.86	PREDICTED: uncharacterized protein LOC103487000 isoform X1 [Cucumis melo]	[more]
KAA0053762.1	1.7e-30	67.86	L10-interacting MYB domain-containing protein-like isoform X2 [Cucumis melo var....	[more]
XP_016899632.1	1.7e-30	67.86	PREDICTED: L10-interacting MYB domain-containing protein-like isoform X2 [Cucumi...	[more]
KAE8651219.1	8.3e-30	67.86	hypothetical protein Csa_000986 [Cucumis sativus]	[more]
XP_031738598.1	8.3e-30	67.86	L10-interacting MYB domain-containing protein [Cucumis sativus]	[more]

BLAST of Lcy10g006960 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..51
None	No IPR available	PANTHER	PTHR47584	FAMILY NOT NAMED	coord: 3..110
None	No IPR available	PANTHER	PTHR47584:SF3	L10-INTERACTING MYB DOMAIN-CONTAINING PROTEIN-LIKE	coord: 3..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g006960.1	Lcy10g006960.1	mRNA