Lcy10g006710 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g006710
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionDUF4283 domain-containing protein
LocationChr10: 27680243 .. 27681318 (-)
RNA-Seq ExpressionLcy10g006710
SyntenyLcy10g006710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCACTAACCTTAAAAATTAAAAAAATAATAATAATAAAAACTCTAACCAACTCCCTTAAGCCACATCAATCCTAATTACAAGCCACTACCATATAACTCCTACTTAAATGCTACCACTACCCTAAATAAGTGATACTAACCTCAGTTTCTAATAAGTAAAAAAATAACTAATTCATACTAATTTTTATATTTCATTATGGATAAGATGAATAATACAAAATTTAGATACCGTCTTGAGTTTTTTTTGAACAAGTCAAATGAAAAAAAAAATTACATATGAAGAAGGGGGTCCTGTCTTTCCTCTCGACTCTCTTCCTCCCTTGGGTGTGAAGAAAGCGGAGTGGAAGAGAAAGTGGACAATCAGGGCAGTCGTAGGTTGCGTTTGCCAGTCGAGGTAGGTTTGAGTCTTTTAGGGGCAGCATCAGGCTGCAAAGGCGGAGAATAGCAGACTCCAACCTGACTTGAAAAGTGATAGAATGGAAGAAGCTCAAACATCTAAAGTAGAGGAAGAAAGACCGGAAGCAGCCTCCACGGAAGAAGCTAGTGTAAGAAAGCAGCTGGAGAACTTAAATCTGACACTGGAAGAAAGAAGCAGAGTATCAGGGATGGACGACGATGAGTTACAATGGAAGATACAAGACCTGGAAAGTATAGCTGTGTGCAAAATTTTAACTGTTAAATACATGAATCCGGAGATATTCAAGAATATGATTCCCAAAATATGGCACATGGAGGGAAGGGTAGTCTAAAAAAGGTAGGCAAAAACATGTTTGAATGTGCGTTCAACTCCGTGAAGGAAAAAAGAAGAGTGCTAGAAGGAGGGCCATGGCTGTATGATCAAGCCCTATTGGTCTTTGAGGAAATAAAAGGGAACGAGAGATATTCTAGATTAGAATTCAAATTTGCTTCATTCTGGATACATTTCACAGATTTGCCGAGAGTGTGTTTGAGTAGAAAATGGGCTGAAAGACTGGGAAATGCAGAAGGAGAATTCGAGCGACTGGATCTGGACAAGATGGAAACAGAATGAGGAGACTCCCTACGAGTTAAAGTTAAGATAGACGTTACTAAACCA

mRNA sequence

ACCACTAACCTTAAAAATTAAAAAAATAATAATAATAAAAACTCTAACCAACTCCCTTAAGCCACATCAATCCTAATTACAAGCCACTACCATATAACTCCTACTTAAATGCTACCACTACCCTAAATAAGTGATACTAACCTCAGTTTCTAATAAGTAAAAAAATAACTAATTCATACTAATTTTTATATTTCATTATGGATAAGATGAATAATACAAAATTTAGATACCGTCTTGAGTTTTTTTTGAACAAGTCAAATGAAAAAAAAAATTACATATGAAGAAGGGGGTCCTGTCTTTCCTCTCGACTCTCTTCCTCCCTTGGGTGTGAAGAAAGCGGAGTGGAAGAGAAAGTGGACAATCAGGGCAGTCGTAGGTTGCGTTTGCCAGTCGAGGTAGGTTTGAGTCTTTTAGGGGCAGCATCAGGCTGCAAAGGCGGAGAATAGCAGACTCCAACCTGACTTGAAAAGTGATAGAATGGAAGAAGCTCAAACATCTAAAGTAGAGGAAGAAAGACCGGAAGCAGCCTCCACGGAAGAAGCTAGTGTAAGAAAGCAGCTGGAGAACTTAAATCTGACACTGGAAGAAAGAAGCAGAGTATCAGGGATGGACGACGATGAGTTACAATGGAAGATACAAGACCTGGAAAGTATAGCTGTGTGCAAAATTTTAACTGTTAAATACATGAATCCGGAGATATTCAAGAATATGATTCCCAAAATATGGCACATGGAGGGAAGGGTAGTCTAAAAAAGGTAGGCAAAAACATGTTTGAATGTGCGTTCAACTCCGTGAAGGAAAAAAGAAGAGTGCTAGAAGGAGGGCCATGGCTGTATGATCAAGCCCTATTGGTCTTTGAGGAAATAAAAGGGAACGAGAGATATTCTAGATTAGAATTCAAATTTGCTTCATTCTGGATACATTTCACAGATTTGCCGAGAGTGTGTTTGAGTAGAAAATGGGCTGAAAGACTGGGAAATGCAGAAGGAGAATTCGAGCGACTGGATCTGGACAAGATGGAAACAGAATGAGGAGACTCCCTACGAGTTAAAGTTAAGATAGACGTTACTAAACCA

Coding sequence (CDS)

ATGGCACATGGAGGGAAGGGTAGTCTAAAAAAGGTAGGCAAAAACATGTTTGAATGTGCGTTCAACTCCGTGAAGGAAAAAAGAAGAGTGCTAGAAGGAGGGCCATGGCTGTATGATCAAGCCCTATTGGTCTTTGAGGAAATAAAAGGGAACGAGAGATATTCTAGATTAGAATTCAAATTTGCTTCATTCTGGATACATTTCACAGATTTGCCGAGAGTGTGTTTGAGTAGAAAATGGGCTGAAAGACTGGGAAATGCAGAAGGAGAATTCGAGCGACTGGATCTGGACAAGATGGAAACAGAATGA

Protein sequence

MAHGGKGSLKKVGKNMFECAFNSVKEKRRVLEGGPWLYDQALLVFEEIKGNERYSRLEFKFASFWIHFTDLPRVCLSRKWAERLGNAEGEFERLDLDKMETE
Homology
BLAST of Lcy10g006710 vs. ExPASy TrEMBL
Match: A0A5C7H9Y2 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_019269 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.1e-13
Identity = 33/88 (37.50%), Postives = 58/88 (65.91%), Query Frame = 0

Query: 8   SLKKVGKNMFECAFNSVKEKRRVLEGGPWLYDQALLVFEEIKGNERYSRLEFKFASFWIH 67
           +++ +G N+F+  F +  +++R+LEGGPWL+D+ LLV  E  G+E+ + L+F++  FWI 
Sbjct: 71  TMELMGINIFKFRFQNYWDRKRILEGGPWLFDKQLLVLREASGSEKVTDLQFRYVPFWIQ 130

Query: 68  FTDLPRVCLSRKWAERLGNAEGEFERLD 96
             +LP  CL+R+    LG   G+ + +D
Sbjct: 131 LHNLPLACLNREIGLHLGGLVGQVKEID 158

BLAST of Lcy10g006710 vs. ExPASy TrEMBL
Match: A0A5C7IY45 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_002101 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-11
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 0

Query: 5   GKGSLKKVGKNMFECAFNSVKEKRRVLEGGPWLYDQALLVFEEIKGNERYSRLEFKFASF 64
           G   ++ +  N+FE  F +++ ++RVL GGPW +D+ALLV EE  G    + +EF    F
Sbjct: 68  GGVEIEAIEDNVFEFQFKNLEARQRVLSGGPWRFDKALLVLEEPSGTSEIANMEFNRTEF 127

Query: 65  WIHFTDLPRVCLSRKWAERLGNAEGEFERLDLD 98
           W+   +LP +C+S +    LGN  GE   +DL+
Sbjct: 128 WVQIHNLPILCMSEEIGLFLGNMIGEVRNVDLE 160

BLAST of Lcy10g006710 vs. ExPASy TrEMBL
Match: A0A5C7HLJ4 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018449 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 0

Query: 5   GKGSLKKVGKNMFECAFNSVKEKRRVLEGGPWLYDQALLVFEEIKGNERYSRLEFKFASF 64
           G   +K +  N+FE  F +++ K++VL GGPW +D+ALLV EE       + +EF    F
Sbjct: 44  GGVEIKAIEDNVFEFQFKNLEAKQKVLSGGPWRFDRALLVLEEPSATGDIANMEFNRTEF 103

Query: 65  WIHFTDLPRVCLSRKWAERLGNAEGEFERLDLD 98
           W+   +LP +C+S +    LGN  GE   +DLD
Sbjct: 104 WVQIHNLPILCMSEEIGLFLGNMIGEVRNVDLD 136

BLAST of Lcy10g006710 vs. ExPASy TrEMBL
Match: A0A5C7HLR9 (DUF4283 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018595 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.0e-11
Identity = 32/93 (34.41%), Postives = 56/93 (60.22%), Query Frame = 0

Query: 5   GKGSLKKVGKNMFECAFNSVKEKRRVLEGGPWLYDQALLVFEEIKGNERYSRLEFKFASF 64
           G   ++ +  N+FE  F S++ ++R+L GGPW +D A+++FEE  G+   + +EF    F
Sbjct: 68  GGVEIEAIEDNIFEFQFKSLEARKRILSGGPWRFDGAIIIFEEPIGSGEIANMEFNKIEF 127

Query: 65  WIHFTDLPRVCLSRKWAERLGNAEGEFERLDLD 98
           W+   +LP +C++ +    LGN  GE   +DL+
Sbjct: 128 WVQIHNLPLLCMTEEIGLFLGNMIGEVRNVDLE 160

BLAST of Lcy10g006710 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 35/91 (38.46%), Postives = 56/91 (61.54%), Query Frame = 0

Query: 8   SLKKVGKNMFECAFNSVKEKRRVLEGGPWLYDQALLVFEEIKGNERYSRLEFKFASFWIH 67
           +++ +GKN+F   F    +  RV++ GPW +D+AL+V ++   ++  S LEF   +FWIH
Sbjct: 72  TVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISELEFNRVAFWIH 131

Query: 68  FTDLPRVCLSRKWAERLGNAEGEFERLDLDK 99
             DLP   L++  A RLGNA G F  +D ++
Sbjct: 132 LFDLPMSWLNKTMAIRLGNAIGNFVDVDCNE 162

BLAST of Lcy10g006710 vs. NCBI nr
Match: TXG54013.1 (hypothetical protein EZV62_019269 [Acer yangbiense])

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-12
Identity = 33/88 (37.50%), Postives = 58/88 (65.91%), Query Frame = 0

Query: 8   SLKKVGKNMFECAFNSVKEKRRVLEGGPWLYDQALLVFEEIKGNERYSRLEFKFASFWIH 67
           +++ +G N+F+  F +  +++R+LEGGPWL+D+ LLV  E  G+E+ + L+F++  FWI 
Sbjct: 71  TMELMGINIFKFRFQNYWDRKRILEGGPWLFDKQLLVLREASGSEKVTDLQFRYVPFWIQ 130

Query: 68  FTDLPRVCLSRKWAERLGNAEGEFERLD 96
             +LP  CL+R+    LG   G+ + +D
Sbjct: 131 LHNLPLACLNREIGLHLGGLVGQVKEID 158

BLAST of Lcy10g006710 vs. NCBI nr
Match: TXG73522.1 (hypothetical protein EZV62_002101 [Acer yangbiense])

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-11
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 0

Query: 5   GKGSLKKVGKNMFECAFNSVKEKRRVLEGGPWLYDQALLVFEEIKGNERYSRLEFKFASF 64
           G   ++ +  N+FE  F +++ ++RVL GGPW +D+ALLV EE  G    + +EF    F
Sbjct: 68  GGVEIEAIEDNVFEFQFKNLEARQRVLSGGPWRFDKALLVLEEPSGTSEIANMEFNRTEF 127

Query: 65  WIHFTDLPRVCLSRKWAERLGNAEGEFERLDLD 98
           W+   +LP +C+S +    LGN  GE   +DL+
Sbjct: 128 WVQIHNLPILCMSEEIGLFLGNMIGEVRNVDLE 160

BLAST of Lcy10g006710 vs. NCBI nr
Match: TXG57136.1 (hypothetical protein EZV62_018449 [Acer yangbiense])

HSP 1 Score: 78.6 bits (192), Expect = 3.5e-11
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 0

Query: 5   GKGSLKKVGKNMFECAFNSVKEKRRVLEGGPWLYDQALLVFEEIKGNERYSRLEFKFASF 64
           G   +K +  N+FE  F +++ K++VL GGPW +D+ALLV EE       + +EF    F
Sbjct: 44  GGVEIKAIEDNVFEFQFKNLEAKQKVLSGGPWRFDRALLVLEEPSATGDIANMEFNRTEF 103

Query: 65  WIHFTDLPRVCLSRKWAERLGNAEGEFERLDLD 98
           W+   +LP +C+S +    LGN  GE   +DLD
Sbjct: 104 WVQIHNLPILCMSEEIGLFLGNMIGEVRNVDLD 136

BLAST of Lcy10g006710 vs. NCBI nr
Match: TXG57282.1 (hypothetical protein EZV62_018595 [Acer yangbiense])

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-10
Identity = 32/93 (34.41%), Postives = 56/93 (60.22%), Query Frame = 0

Query: 5   GKGSLKKVGKNMFECAFNSVKEKRRVLEGGPWLYDQALLVFEEIKGNERYSRLEFKFASF 64
           G   ++ +  N+FE  F S++ ++R+L GGPW +D A+++FEE  G+   + +EF    F
Sbjct: 68  GGVEIEAIEDNIFEFQFKSLEARKRILSGGPWRFDGAIIIFEEPIGSGEIANMEFNKIEF 127

Query: 65  WIHFTDLPRVCLSRKWAERLGNAEGEFERLDLD 98
           W+   +LP +C++ +    LGN  GE   +DL+
Sbjct: 128 WVQIHNLPLLCMTEEIGLFLGNMIGEVRNVDLE 160

BLAST of Lcy10g006710 vs. NCBI nr
Match: XP_042952130.1 (uncharacterized protein At4g02000-like [Carya illinoinensis])

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 31/93 (33.33%), Postives = 57/93 (61.29%), Query Frame = 0

Query: 6   KGSLKKVGKNMFECAFNSVKEKRRVLEGGPWLYDQALLVFEEIKGNERYSRLEFKFASFW 65
           +    +V  N+F   F++V +K RV  G PWL+D  LLV +E  G+    +++F   SFW
Sbjct: 67  RAQFTEVSLNIFTLVFDNVDDKMRVWAGRPWLFDNQLLVLKEYVGDTPLKQVDFNSESFW 126

Query: 66  IHFTDLPRVCLSRKWAERLGNAEGEFERLDLDK 99
           + F ++P  C++ K  E++G++ G+ E++D+ +
Sbjct: 127 VRFHNMPLSCMTEKRGEQIGSSVGKVEKVDVQE 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5C7H9Y29.1e-1337.50CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01926... [more]
A0A5C7IY451.0e-1137.63CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00210... [more]
A0A5C7HLJ41.7e-1138.71Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018449 PE=4 SV=1[more]
A0A5C7HLR95.0e-1134.41DUF4283 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018595 ... [more]
A0A6J1DU551.1e-1038.46uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
Match NameE-valueIdentityDescription
TXG54013.11.9e-1237.50hypothetical protein EZV62_019269 [Acer yangbiense][more]
TXG73522.12.1e-1137.63hypothetical protein EZV62_002101 [Acer yangbiense][more]
TXG57136.13.5e-1138.71hypothetical protein EZV62_018449 [Acer yangbiense][more]
TXG57282.11.0e-1034.41hypothetical protein EZV62_018595 [Acer yangbiense][more]
XP_042952130.11.3e-1033.33uncharacterized protein At4g02000-like [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 3..97
e-value: 8.9E-15
score: 54.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g006710.1Lcy10g006710.1mRNA