Lcy10g006180 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g006180
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionProtein of Unknown Function (DUF239)
LocationChr10: 25952616 .. 25952804 (+)
RNA-Seq ExpressionLcy10g006180
SyntenyLcy10g006180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATTGGTGGTGGAATTCGGGTCGGGTATTGGGCGGCGTTCTTATTCACGCACCTTCAAAGGACGATGATTCAATTCGGTGGGGGAGGTGGTGAATTCGAGAGTTTCTGGATTTCACACGGCGTCGCAGATGGGCAGTGGCCATTTTGCTGGCGAATGATTTGTAAAAACTTCATATTTTCGTAA

mRNA sequence

ATGAGAATTGGTGGTGGAATTCGGGTCGGGTATTGGGCGGCGTTCTTATTCACGCACCTTCAAAGGACGATGATTCAATTCGGTGGGGGAGGTGGTGAATTCGAGAGTTTCTGGATTTCACACGGCGTCGCAGATGGGCAGTGGCCATTTTGCTGGCGAATGATTTGTAAAAACTTCATATTTTCGTAA

Coding sequence (CDS)

ATGAGAATTGGTGGTGGAATTCGGGTCGGGTATTGGGCGGCGTTCTTATTCACGCACCTTCAAAGGACGATGATTCAATTCGGTGGGGGAGGTGGTGAATTCGAGAGTTTCTGGATTTCACACGGCGTCGCAGATGGGCAGTGGCCATTTTGCTGGCGAATGATTTGTAAAAACTTCATATTTTCGTAA

Protein sequence

MRIGGGIRVGYWAAFLFTHLQRTMIQFGGGGGEFESFWISHGVADGQWPFCWRMICKNFIFS
Homology
[Close]
BLAST of Lcy10g006180 vs. TAIR 10
Match: AT1G70550.2 (Protein of Unknown Function (DUF239) )

HSP 1 Score: 42.4 bits (98), Expect = 1.6e-04
Identity = 18/31 (58.06%), Postives = 24/31 (77.42%), Query Frame = 0 

Query: 1   MRIGGGIRVGYWAAFLFTHLQR--TMIQFGG 30
           ++ G G  VGYW AFLFTHL++  +M+QFGG
Sbjct: 294 LQFGSGALVGYWPAFLFTHLKQHGSMVQFGG 324

[Close]
BLAST of Lcy10g006180 vs. TAIR 10
Match: AT1G70550.1 (Protein of Unknown Function (DUF239) )

HSP 1 Score: 42.4 bits (98), Expect = 1.6e-04
Identity = 18/31 (58.06%), Postives = 24/31 (77.42%), Query Frame = 0 

Query: 1   MRIGGGIRVGYWAAFLFTHLQR--TMIQFGG 30
           ++ G G  VGYW AFLFTHL++  +M+QFGG
Sbjct: 349 LQFGSGALVGYWPAFLFTHLKQHGSMVQFGG 379

[Close]
BLAST of Lcy10g006180 vs. TAIR 10
Match: AT5G50150.1 (Protein of Unknown Function (DUF239) )

HSP 1 Score: 41.6 bits (96), Expect = 2.7e-04
Identity = 17/31 (54.84%), Postives = 24/31 (77.42%), Query Frame = 0 

Query: 1   MRIGGGIRVGYWAAFLFTHLQ--RTMIQFGG 30
           + +G G+ VGYW AFLF+HL+   +M+QFGG
Sbjct: 304 LELGNGLLVGYWPAFLFSHLRSHASMVQFGG 334

[Close]
BLAST of Lcy10g006180 vs. TAIR 10
Match: AT1G10750.1 (Protein of Unknown Function (DUF239) )

HSP 1 Score: 41.2 bits (95), Expect = 3.5e-04
Identity = 17/31 (54.84%), Postives = 23/31 (74.19%), Query Frame = 0 

Query: 1   MRIGGGIRVGYWAAFLFTHLQR--TMIQFGG 30
           +  G GI VGYW +FLFTHL+   +M+Q+GG
Sbjct: 351 LEFGSGILVGYWPSFLFTHLKEHASMVQYGG 381

The following BLAST results are available for this feature:
BLAST of Lcy10g006180 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy10g006180 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy10g006180 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy10g006180 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G70550.21.6e-0458.06Protein of Unknown Function (DUF239) [more]
AT1G70550.11.6e-0458.06Protein of Unknown Function (DUF239) [more]
AT5G50150.12.7e-0454.84Protein of Unknown Function (DUF239) [more]
AT1G10750.13.5e-0454.84Protein of Unknown Function (DUF239) [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g006180.1Lcy10g006180.1mRNA