Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAAAAACATGGAGTTAACATTAGTTATGATAAAGCTTGGAGGACTCATGATCTTGCATTGAAATCTATTAGGGAGTTTGTTGAAGAGTCGTATGACCTTATCCCCTCATTTTCTGCCTCATTGATTGAAAAGAACCCAGGTGCGTTATTTTAATTATTAAATATTAGGTTTGTACTAAAATATATACAGTGTATTTGTTGCTCCCATTCTCACATATGCTACTATATTTTCTTTAAGAACATATACAGCGTATGAACTTGAAGATGATAGAAGGTTCAAATGCTTTTTCATGTCACTCTTTGCCTCCATCTATACGTGGAAATATTGTTTTCCTGTCATATCAGTCGATGGTATGTTTTTAAAAAACAAATTTGCTAGCACTCTAATTTCTGCCTATACATTGGATGGAAATCCTCATATTGTTTTGTTGGCATTTTTTGTAGTAGACTCAGAAAATAATGCTTCATATAATTGGTTCTTTCGTAATCTTAAATCTACCCTTGGGGAATCGAATCAGGTAGTTATTATATCTGACAAGCATAGTAGAATTCTGAAAGGTGTTTTTGATGTTTATGACTCTACAGAACATTGGATATGTGCATTTCACTTGTTAAAAAACTTGAAACTTAAACACAAGTCCAAACCAATTGATATAATGTTCATGAAGTGTGTGAAGACTTACACAGTTATTGAGTATGAGTATTACATGAGACAGCTAGAGTCCATAGTTCCTTCAATTAGGCCAAAGTTAGAAGAATTTGGTCGTTCTAAATGGACAAGGGCATTTTTTGTTTGGAAAAGATATTCAATGATGACTATTAATATATCTGAACGCTTGAATTCTCTGTTGTTGGATGAACGTGAGTTACCTATTATTCCTCTCCTTGAGTCAATATGGATATTGTTCCAAAGATGGTTTTATGACTGTCAATGTTTCTCTTCATTTCAACGAACACACCTTTCTCCATGGGTTGAAGCAATTCTCAGAGACATTCTGAAAGATAGCCAAATAATGGACGTGAGTTTACGATTTATTAACTATATATGTTCCATATCGCTTATTGTTTGGCTTCTAAATGTTTTTCTTCTGTTTTTTTTTTTTTTTGTAGCTATATCATGTAAATCAGTATCAATTTGA
mRNA sequence
ATGAGAAAAAAACATGGAGTTAACATTAGTTATGATAAAGCTTGGAGGACTCATGATCTTGCATTGAAATCTATTAGGGAGTTTGTTGAAGAGTCGTATGACCTTATCCCCTCATTTTCTGCCTCATTGATTGAAAAGAACCCAGCGTATGAACTTGAAGATGATAGAAGGTTCAAATGCTTTTTCATGTCACTCTTTGCCTCCATCTATACGTGGAAATATTGTTTTCCTGTCATATCAGTCGATGAACATTGGATATGTGCATTTCACTTGTTAAAAAACTTGAAACTTAAACACAAGTCCAAACCAATTGATATAATGTTCATGAAGTGTGTGAAGACTTACACAGTTATTGAGTATGAGTATTACATGAGACAGCTAGAGTCCATAGTTCCTTCAATTAGGCCAAAGTTAGAAGAATTTGGTCGTTCTAAATGGACAAGGGCATTTTTTGTTTGGAAAAGATATTCAATGATGACTATTAATATATCTGAACGCTTGAATTCTCTGTTGTTGGATGAACCTATATCATGTAAATCAGTATCAATTTGA
Coding sequence (CDS)
ATGAGAAAAAAACATGGAGTTAACATTAGTTATGATAAAGCTTGGAGGACTCATGATCTTGCATTGAAATCTATTAGGGAGTTTGTTGAAGAGTCGTATGACCTTATCCCCTCATTTTCTGCCTCATTGATTGAAAAGAACCCAGCGTATGAACTTGAAGATGATAGAAGGTTCAAATGCTTTTTCATGTCACTCTTTGCCTCCATCTATACGTGGAAATATTGTTTTCCTGTCATATCAGTCGATGAACATTGGATATGTGCATTTCACTTGTTAAAAAACTTGAAACTTAAACACAAGTCCAAACCAATTGATATAATGTTCATGAAGTGTGTGAAGACTTACACAGTTATTGAGTATGAGTATTACATGAGACAGCTAGAGTCCATAGTTCCTTCAATTAGGCCAAAGTTAGAAGAATTTGGTCGTTCTAAATGGACAAGGGCATTTTTTGTTTGGAAAAGATATTCAATGATGACTATTAATATATCTGAACGCTTGAATTCTCTGTTGTTGGATGAACCTATATCATGTAAATCAGTATCAATTTGA
Protein sequence
MRKKHGVNISYDKAWRTHDLALKSIREFVEESYDLIPSFSASLIEKNPAYELEDDRRFKCFFMSLFASIYTWKYCFPVISVDEHWICAFHLLKNLKLKHKSKPIDIMFMKCVKTYTVIEYEYYMRQLESIVPSIRPKLEEFGRSKWTRAFFVWKRYSMMTINISERLNSLLLDEPISCKSVSI
Homology
BLAST of Lcy10g005330 vs. ExPASy TrEMBL
Match:
A0A5A7SVT9 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001100 PE=4 SV=1)
HSP 1 Score: 182.2 bits (461), Expect = 2.0e-42
Identity = 101/223 (45.29%), Postives = 127/223 (56.95%), Query Frame = 0
Query: 1 MRKKHGVNISYDKAWRTHDLALKSIREFVEESYDLIPSFSASLIEKNP----AYELEDDR 60
M HGVNISYDKAWR ++AL SIR E+SY ++ +FS +LI NP A E++D+
Sbjct: 1 MNIHHGVNISYDKAWRGREIALNSIRGTPEDSYAMLSAFSDALIRNNPGTYTAEEVDDEG 60
Query: 61 RFKCFFMSLFASIYTWKYCFPVISVD---------------------------------- 120
RFK +FM+L ASI W YC PVISVD
Sbjct: 61 RFKFYFMALAASIDAWNYCVPVISVDDAALRNKYLGTLISASVFGEHNEMVIVSDTHKSI 120
Query: 121 -----------EHWICAFHLLKNLKLKHKSKPIDIMFMKCVKTYTVIEYEYYMRQLESIV 175
EH +CAFHLLKNLK HKS P++ F KC + YT + +EYYMRQLE +
Sbjct: 121 ENGFNAVYEIAEHGLCAFHLLKNLKKNHKSLPMEDSFNKCARAYTPLVFEYYMRQLEQLS 180
BLAST of Lcy10g005330 vs. ExPASy TrEMBL
Match:
A0A5A7TC03 (ZnF_PMZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00200 PE=4 SV=1)
HSP 1 Score: 177.2 bits (448), Expect = 6.4e-41
Identity = 101/235 (42.98%), Postives = 126/235 (53.62%), Query Frame = 0
Query: 1 MRKKHGVNISYDKAWRTHDLALKSIREFVEESYDLIPSFSASLIEKNP----AYELEDDR 60
M+ HGVNISYDKAWR ++AL SIR ++SY ++ +FS +LI NP A E +D+
Sbjct: 100 MKIHHGVNISYDKAWRGREIALNSIRGTPKDSYAMLSAFSDALIRNNPGTYTAEEADDEG 159
Query: 61 RFKCFFMSLFASIYTWKYCFPVISVD---------------------------------- 120
RFK +FM+L ASI W YC PVISVD
Sbjct: 160 RFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISACTIDGNSQIFFRNLKTVFG 219
Query: 121 --------------------------EHWICAFHLLKNLKLKHKSKPIDIMFMKCVKTYT 172
EH +CAFHLLKNLK HKS P++ F KC + YT
Sbjct: 220 EHNEMVIVSDAHKSIENGFNTVYEIAEHGLCAFHLLKNLKKNHKSLPMEDSFNKCARAYT 279
BLAST of Lcy10g005330 vs. ExPASy TrEMBL
Match:
A0A5D3DFW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00040 PE=4 SV=1)
HSP 1 Score: 173.3 bits (438), Expect = 9.2e-40
Identity = 102/256 (39.84%), Postives = 129/256 (50.39%), Query Frame = 0
Query: 1 MRKKHGVNISYDKAWRTHDLALKSIREFVEESYDLIPSFSASLIEKNP----AYELEDDR 60
M+ H VNISYDKAWR ++AL SIR E+SY ++ +FS +LI NP A E +D+
Sbjct: 168 MKIHHSVNISYDKAWRGREIALNSIRGTPEDSYAMLSAFSDALIRNNPGTYTAEEADDEG 227
Query: 61 RFKCFFMSLFASIYTWKYCFPVISVD---------------------------------- 120
RFK +FM+L ASI W YC PVISVD
Sbjct: 228 RFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISTCTIDGNSQIVPLPFAVVDS 287
Query: 121 --------------------------------------------EHWICAFHLLKNLKLK 175
EH +CAFHLLKNLK
Sbjct: 288 ENDLSWSWFFRNLKAVFGEHNEMLIVSDAYKSIENGFNAVYEIAEHGLCAFHLLKNLKKN 347
BLAST of Lcy10g005330 vs. ExPASy TrEMBL
Match:
A0A5D3CCH7 (MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001640 PE=4 SV=1)
HSP 1 Score: 172.2 bits (435), Expect = 2.0e-39
Identity = 97/215 (45.12%), Postives = 121/215 (56.28%), Query Frame = 0
Query: 1 MRKKHGVNISYDKAWRTHDLALKSIREFVEESYDLIPSFSASLIEKNP----AYELEDDR 60
M+ HGVNISYDKAWR H++AL SIR E+SY ++ +FS LI NP E +D+
Sbjct: 1 MKIHHGVNISYDKAWRGHEIALNSIRCTPEDSYAMLSAFSDVLIRNNPGTYTVEEADDEG 60
Query: 61 RFKCFFMSLFASIYTWKYCFPVISVDE--------------------------------- 120
RFK +FM+L ASI W YC PVISVD
Sbjct: 61 RFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISACTIDGNSQIVPLAFAVVDS 120
Query: 121 ----HWICAFHLLKNLKLKHKSKPIDIMFMKCVKTYTVIEYEYYMRQLESIVPSIRPKLE 175
W F LKNLK HKS P++ F KC + YT +E+EYYMRQLE + PS+R +LE
Sbjct: 121 ENDLSWSWFFRNLKNLKKNHKSLPMEDSFNKCARAYTPLEFEYYMRQLEQLSPSMRHELE 180
BLAST of Lcy10g005330 vs. ExPASy TrEMBL
Match:
A0A5D3E198 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001100 PE=4 SV=1)
HSP 1 Score: 172.2 bits (435), Expect = 2.0e-39
Identity = 102/256 (39.84%), Postives = 128/256 (50.00%), Query Frame = 0
Query: 1 MRKKHGVNISYDKAWRTHDLALKSIREFVEESYDLIPSFSASLIEKNP----AYELEDDR 60
M+ HGVNISYDKAWR ++AL SIR E+SY ++ +FS +LI NP A E +D+
Sbjct: 175 MKIHHGVNISYDKAWRGREIALNSIRGTPEDSYAMLSAFSDALIRNNPGTYTAEEADDEG 234
Query: 61 RFKCFFMSLFASIYTWKYCFPVISVD---------------------------------- 120
RFK +FM+L ASI W YC PVISVD
Sbjct: 235 RFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISACTIDGNSQIVPLAFAVVDS 294
Query: 121 --------------------------------------------EHWICAFHLLKNLKLK 175
EH +CAFHLLKNLK
Sbjct: 295 ENDLSWSWFFRNLKAVFGEHNEMVIVSDAHKSIENGFNAVYEIAEHGLCAFHLLKNLKKN 354
BLAST of Lcy10g005330 vs. NCBI nr
Match:
KAA0033299.1 (uncharacterized protein E6C27_scaffold845G001100 [Cucumis melo var. makuwa])
HSP 1 Score: 182.2 bits (461), Expect = 4.1e-42
Identity = 101/223 (45.29%), Postives = 127/223 (56.95%), Query Frame = 0
Query: 1 MRKKHGVNISYDKAWRTHDLALKSIREFVEESYDLIPSFSASLIEKNP----AYELEDDR 60
M HGVNISYDKAWR ++AL SIR E+SY ++ +FS +LI NP A E++D+
Sbjct: 1 MNIHHGVNISYDKAWRGREIALNSIRGTPEDSYAMLSAFSDALIRNNPGTYTAEEVDDEG 60
Query: 61 RFKCFFMSLFASIYTWKYCFPVISVD---------------------------------- 120
RFK +FM+L ASI W YC PVISVD
Sbjct: 61 RFKFYFMALAASIDAWNYCVPVISVDDAALRNKYLGTLISASVFGEHNEMVIVSDTHKSI 120
Query: 121 -----------EHWICAFHLLKNLKLKHKSKPIDIMFMKCVKTYTVIEYEYYMRQLESIV 175
EH +CAFHLLKNLK HKS P++ F KC + YT + +EYYMRQLE +
Sbjct: 121 ENGFNAVYEIAEHGLCAFHLLKNLKKNHKSLPMEDSFNKCARAYTPLVFEYYMRQLEQLS 180
BLAST of Lcy10g005330 vs. NCBI nr
Match:
KAA0040870.1 (uncharacterized protein E6C27_scaffold345G00200 [Cucumis melo var. makuwa])
HSP 1 Score: 177.2 bits (448), Expect = 1.3e-40
Identity = 101/235 (42.98%), Postives = 126/235 (53.62%), Query Frame = 0
Query: 1 MRKKHGVNISYDKAWRTHDLALKSIREFVEESYDLIPSFSASLIEKNP----AYELEDDR 60
M+ HGVNISYDKAWR ++AL SIR ++SY ++ +FS +LI NP A E +D+
Sbjct: 100 MKIHHGVNISYDKAWRGREIALNSIRGTPKDSYAMLSAFSDALIRNNPGTYTAEEADDEG 159
Query: 61 RFKCFFMSLFASIYTWKYCFPVISVD---------------------------------- 120
RFK +FM+L ASI W YC PVISVD
Sbjct: 160 RFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISACTIDGNSQIFFRNLKTVFG 219
Query: 121 --------------------------EHWICAFHLLKNLKLKHKSKPIDIMFMKCVKTYT 172
EH +CAFHLLKNLK HKS P++ F KC + YT
Sbjct: 220 EHNEMVIVSDAHKSIENGFNTVYEIAEHGLCAFHLLKNLKKNHKSLPMEDSFNKCARAYT 279
BLAST of Lcy10g005330 vs. NCBI nr
Match:
TYK22587.1 (uncharacterized protein E5676_scaffold195G00040 [Cucumis melo var. makuwa])
HSP 1 Score: 173.3 bits (438), Expect = 1.9e-39
Identity = 102/256 (39.84%), Postives = 129/256 (50.39%), Query Frame = 0
Query: 1 MRKKHGVNISYDKAWRTHDLALKSIREFVEESYDLIPSFSASLIEKNP----AYELEDDR 60
M+ H VNISYDKAWR ++AL SIR E+SY ++ +FS +LI NP A E +D+
Sbjct: 168 MKIHHSVNISYDKAWRGREIALNSIRGTPEDSYAMLSAFSDALIRNNPGTYTAEEADDEG 227
Query: 61 RFKCFFMSLFASIYTWKYCFPVISVD---------------------------------- 120
RFK +FM+L ASI W YC PVISVD
Sbjct: 228 RFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISTCTIDGNSQIVPLPFAVVDS 287
Query: 121 --------------------------------------------EHWICAFHLLKNLKLK 175
EH +CAFHLLKNLK
Sbjct: 288 ENDLSWSWFFRNLKAVFGEHNEMLIVSDAYKSIENGFNAVYEIAEHGLCAFHLLKNLKKN 347
BLAST of Lcy10g005330 vs. NCBI nr
Match:
TYK08019.1 (uncharacterized protein E5676_scaffold265G001640 [Cucumis melo var. makuwa])
HSP 1 Score: 172.2 bits (435), Expect = 4.2e-39
Identity = 97/215 (45.12%), Postives = 121/215 (56.28%), Query Frame = 0
Query: 1 MRKKHGVNISYDKAWRTHDLALKSIREFVEESYDLIPSFSASLIEKNP----AYELEDDR 60
M+ HGVNISYDKAWR H++AL SIR E+SY ++ +FS LI NP E +D+
Sbjct: 1 MKIHHGVNISYDKAWRGHEIALNSIRCTPEDSYAMLSAFSDVLIRNNPGTYTVEEADDEG 60
Query: 61 RFKCFFMSLFASIYTWKYCFPVISVDE--------------------------------- 120
RFK +FM+L ASI W YC PVISVD
Sbjct: 61 RFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISACTIDGNSQIVPLAFAVVDS 120
Query: 121 ----HWICAFHLLKNLKLKHKSKPIDIMFMKCVKTYTVIEYEYYMRQLESIVPSIRPKLE 175
W F LKNLK HKS P++ F KC + YT +E+EYYMRQLE + PS+R +LE
Sbjct: 121 ENDLSWSWFFRNLKNLKKNHKSLPMEDSFNKCARAYTPLEFEYYMRQLEQLSPSMRHELE 180
BLAST of Lcy10g005330 vs. NCBI nr
Match:
TYK29863.1 (MuDRA-like transposase [Cucumis melo var. makuwa])
HSP 1 Score: 172.2 bits (435), Expect = 4.2e-39
Identity = 102/256 (39.84%), Postives = 128/256 (50.00%), Query Frame = 0
Query: 1 MRKKHGVNISYDKAWRTHDLALKSIREFVEESYDLIPSFSASLIEKNP----AYELEDDR 60
M+ HGVNISYDKAWR ++AL SIR E+SY ++ +FS +LI NP A E +D+
Sbjct: 175 MKIHHGVNISYDKAWRGREIALNSIRGTPEDSYAMLSAFSDALIRNNPGTYTAEEADDEG 234
Query: 61 RFKCFFMSLFASIYTWKYCFPVISVD---------------------------------- 120
RFK +FM+L ASI W YC PVISVD
Sbjct: 235 RFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISACTIDGNSQIVPLAFAVVDS 294
Query: 121 --------------------------------------------EHWICAFHLLKNLKLK 175
EH +CAFHLLKNLK
Sbjct: 295 ENDLSWSWFFRNLKAVFGEHNEMVIVSDAHKSIENGFNAVYEIAEHGLCAFHLLKNLKKN 354
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SVT9 | 2.0e-42 | 45.29 | CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... | [more] |
| A0A5A7TC03 | 6.4e-41 | 42.98 | ZnF_PMZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5D3DFW1 | 9.2e-40 | 39.84 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3CCH7 | 2.0e-39 | 45.12 | MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
| A0A5D3E198 | 2.0e-39 | 39.84 | MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0033299.1 | 4.1e-42 | 45.29 | uncharacterized protein E6C27_scaffold845G001100 [Cucumis melo var. makuwa] | [more] |
| KAA0040870.1 | 1.3e-40 | 42.98 | uncharacterized protein E6C27_scaffold345G00200 [Cucumis melo var. makuwa] | [more] |
| TYK22587.1 | 1.9e-39 | 39.84 | uncharacterized protein E5676_scaffold195G00040 [Cucumis melo var. makuwa] | [more] |
| TYK08019.1 | 4.2e-39 | 45.12 | uncharacterized protein E5676_scaffold265G001640 [Cucumis melo var. makuwa] | [more] |
| TYK29863.1 | 4.2e-39 | 39.84 | MuDRA-like transposase [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
