Lcy10g004650 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g004650
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description40S ribosomal protein S13
LocationChr10: 11914972 .. 11917573 (+)
RNA-Seq ExpressionLcy10g004650
SyntenyLcy10g004650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGATTGAAGCTGGAATTAAAGAAAACCATGGATATGTATAGCTCAACCTACAAAGAGGTAATCTCAGCCAAGAACAAGGTAAATATAAGAAAACTCTACTTTATTGATAGTGGTTAGTAAAAAATGAGTCTTTAGATTGGGTTCTCAACTTTTGGTGGTTTATATCCAACCAAATACTTTGCTGGTAAAGTGGAATGATTTGATTAAGTAAATCTCAAAGGGAAATTTGGAGTTACGTTTGGTTGTAAGTATAGAAGAAAAGAATGCATAAAAATTTGTCTTGAAATTAAGGTTAGAGAACTTAGTCAGTGAAAGCAAGATAAGGCACGTAAGTTTGAGGAAGTCAGGCTAGCTGAAGAGGTTGCTCTCGCTATTGCTGAGATGGAGAGAGCCAAGTGCAAAGTTGCCATTGAAGTAGCAGAGGCAGCACAAAAGCTAGCCGAAAGAGAAGCCCAGAGAAGAGAATGGTTTCAAGCTGCATTTTATACATAATAGATTCATGAAACAATTTTTAATTACATTGGATGTGCTTAACAAGAATTAATTGTTTATTGTTTATACTAATGCAGACAAGGAAGTTTATTTAGTCTTATGCATTTGTCCTCAGTATTGCTCAATTTCTTCTTTTACAAGATGATGATCACGTAGCTAATGCTGAGGCTCTTATCAATAAAGCTTCATTCTTGGTTAGCAATAGTTAGCATGAAGTCGTTAATTTACAATATCAGGTTAAAAATGCGTTTAATGGTTGATGACATTAACTTAAGGATGGGTTATATGGTTTTTCTTCTAAGAAAACCGCAAGATCTTTCATTGCTTGTCATTTTAATTGCTAGTCTTTCTAATGGAAGGGACGTGAATCTCTATACTATCTATAGAAATTGATGGCTTTCCTTTGACCATTCAGGTTGCCGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTCCGTGATTCTCATGGGATTGCTCAAGTGAAAAGTGTAACTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGTGAGCCCCATCTACCCTTCCTCCACTGAACTTCTATTTTATACATCAGTCAGAATTATTATGTTATTCTTTTTAACATGTTTTCTTTTTTAGCTCAGGGCTAGCTCTTGAAATCTCAAAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAAAAACAGGAAAGAAAATGGTTCCAAGTTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTGGCCTGGTATTACAAGAAGACAAAGAAGCTTCCCCTGTTTGGAAGTAGTAAGTATTTTAAGGCACAGAAGCACATGAATTATTTAATAGGTAGTTTATGATTTTGAATATATGGTGGAGATAGGTATTGTGTAATTTTGAATATATGGTGGAAATTGGTGTAAAGTTCTTCATTTTGGAATTGTCCAAATGGAGTTGATAAGTCTTGTAATTTTGTAATTGTTCATGTGGGTTGATAGGTCTTGTAATTTTTGGAATTGTTCATATGGGTTTATAGTTGTAATTTTGGAATTGCTCATATGGAGGTTGGATACTTTTGTAATGTTGAAGATATGAATTTTATTGAAGTTATTGGAAGAAATTTGGTTGATGGATCTTTAATGTGTATTTTTTTTATTTGGTTGATCAAAATATCAAATTGTTGGAATGCAATGCAGGAGATTCAAGATAATAGGGAACAACTATTATAATTGAAAAAAAATCACAAACAAACATGACATGTAAAATGTGTCAAAAATTTATTAAATTGATATTTTTGAAATGTCAAGATAAAGTATCATTTGACACGTTAGACCTGTCAAATTTTAACAAAAATGATATTTAATAAATGTCAAGAAATCTATATACATGACGCTTCAGAAATGTCAATGTTGTTAATATTCTTGATGTTTAAAAAATATCAAGGAAAGAATATATTGACGCTTCTTGTTCGTCACATTTTCGATACCTTATTCTTGACAGTGGTTCTCTCGACGCTTTTAAAAGCGTCAAGAGTATTAAAATTTGACATTCCAAAAGTGTCAGTAATACCATTTTGTTATAGTGATTATTGTTCTTATCTTGATGTAAGAAATATTGCATTCAACTCTAAAATGAATATTGTTTGGTTGGTTGTGTATTGCAAGAACTCAACAAAGTCAAGAAAAACCATATTGTGGACAATATTGATGTATGACCTTTTTTTGTTGGGTTAGTGGAAAAAAAAAACATATAATATATTCCCTCATGGTTGAAGTTCAATGTAGAAATTGTTGTGGTGTACAAAATCTATTACACTTAGTTTGTATATAAAAATTTAACAATTTTGGGTTCTTTTTTTTTTTTGAGTACATCAACATTTGGGGGTGGGGGGATTCGAACCTCTGATCTCATGGTCGAGGGTACATGCCAATTACCGCTGAGCTAAGCTCGCTTTGGCACAATTTTGGGTTCAATGATATATAAAAGTTGTTATTTATGTATCTATTTATTTTGTGTGTAAGGATTTGAGTGCTTTATTTTGGAAACATATATATGTTTATTCACAGGTATTAG

mRNA sequence

ATGAAAAGATTGAAGCTGGAATTAAAGAAAACCATGGATATGTATAGCTCAACCTACAAAGAGGTAATCTCAGCCAAGAACAAGGTTGCCGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTCCGTGATTCTCATGGGATTGCTCAAGTGAAAAGTGTAACTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCTTGAAATCTCAAAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAAAAACAGGAAAGAAAATGGTTCCAAGTTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTGGCCTGGTATTAG

Coding sequence (CDS)

ATGAAAAGATTGAAGCTGGAATTAAAGAAAACCATGGATATGTATAGCTCAACCTACAAAGAGGTAATCTCAGCCAAGAACAAGGTTGCCGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTCCGTGATTCTCATGGGATTGCTCAAGTGAAAAGTGTAACTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCTTGAAATCTCAAAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAAAAACAGGAAAGAAAATGGTTCCAAGTTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTGGCCTGGTATTAG

Protein sequence

MKRLKLELKKTMDMYSSTYKEVISAKNKVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLALEISKDLYHLIKKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY
Homology
[Close]
BLAST of Lcy10g004650 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.7e-39
Identity = 85/96 (88.54%), Postives = 88/96 (91.67%), Query Frame = 0 

Query: 29  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLALEISKDLYHLI 88
           V ENICKFAKKGLTPSQIGVILRDSHGIAQV SVTGSKILRILKAHGLA EI +DLYHLI
Sbjct: 33  VEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 89  KKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY 125
           KK VSIRKHLE+NRK+  SKFRLILVESRIHRLA Y
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

[Close]
BLAST of Lcy10g004650 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.9e-38
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0 

Query: 29  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLALEISKDLYHLI 88
           V E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLA EI +DLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 89  KKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY 125
           KK V+IRKHLE+NRK+  SKFRLILVESRIHRLA Y
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

[Close]
BLAST of Lcy10g004650 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.9e-38
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0 

Query: 29  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLALEISKDLYHLI 88
           V E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLA EI +DLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 89  KKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY 125
           KK V+IRKHLE+NRK+  SKFRLILVESRIHRLA Y
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

[Close]
BLAST of Lcy10g004650 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.3e-38
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 0 

Query: 29  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLALEISKDLYHLI 88
           V E ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA EI +DLYHLI
Sbjct: 33  VDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 89  KKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY 125
           KK VSIRKHLE+ RK+  SKFRLILVESRIHRLA Y
Sbjct: 93  KKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARY 128

[Close]
BLAST of Lcy10g004650 vs. ExPASy Swiss-Prot
Match: Q9WVH0 (40S ribosomal protein S13 OS=Cricetulus griseus OX=10029 GN=RPS13 PE=3 SV=3)

HSP 1 Score: 142.9 bits (359), Expect = 2.4e-33
Identity = 72/100 (72.00%), Postives = 86/100 (86.00%), Query Frame = 0 

Query: 25  AKNKVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLALEISKDL 84
           A + V E I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLA ++ +DL
Sbjct: 29  ASDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDL 88

Query: 85  YHLIKKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY 125
           YHLIKK V++RKHLE+NRK+  +KFRLIL+ESRIHRLA Y
Sbjct: 89  YHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARY 128

[Close]
BLAST of Lcy10g004650 vs. ExPASy TrEMBL
Match: A0A7J9A571 (Ribosomal_S13_N domain-containing protein OS=Gossypium laxum OX=34288 GN=Golax_006711 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 6.9e-39
Identity = 89/112 (79.46%), Postives = 98/112 (87.50%), Query Frame = 0 

Query: 13  DMYSSTYKEVISAKNKVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK 72
           DM     +++IS+  +V ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK
Sbjct: 11  DMACQLLQQLISSTMQVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK 70

Query: 73  AHGLALEISKDLYHLIKKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY 125
           AHGLA EI +DLYHLIKK V+IRKHLE+NRK+  SKFRLILVESRIHRLA Y
Sbjct: 71  AHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 122

[Close]
BLAST of Lcy10g004650 vs. ExPASy TrEMBL
Match: A0A6J1KV63 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.5e-38
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 0 

Query: 29  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLALEISKDLYHLI 88
           VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA EI +DLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 89  KKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY 125
           KK VSIRKHLE+NRK+  SKFRLILVESRIHRLA Y
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

[Close]
BLAST of Lcy10g004650 vs. ExPASy TrEMBL
Match: A0A6J1HJL3 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.5e-38
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 0 

Query: 29  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLALEISKDLYHLI 88
           VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA EI +DLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 89  KKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY 125
           KK VSIRKHLE+NRK+  SKFRLILVESRIHRLA Y
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

[Close]
BLAST of Lcy10g004650 vs. ExPASy TrEMBL
Match: A0A6J1CQC4 (40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111013762 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.5e-38
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 0 

Query: 29  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLALEISKDLYHLI 88
           VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA EI +DLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 89  KKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY 125
           KK VSIRKHLE+NRK+  SKFRLILVESRIHRLA Y
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

[Close]
BLAST of Lcy10g004650 vs. ExPASy TrEMBL
Match: A0A5A7T967 (40S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00490 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 9.9e-38
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 0 

Query: 29  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLALEISKDLYHLI 88
           VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLA EI +DLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLI 92

Query: 89  KKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY 125
           KK VSIRKHLE+NRK+  SKFRLILVESRIHRLA Y
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

[Close]
BLAST of Lcy10g004650 vs. NCBI nr
Match: MBA0719002.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 169.9 bits (429), Expect = 1.4e-38
Identity = 89/112 (79.46%), Postives = 98/112 (87.50%), Query Frame = 0 

Query: 13  DMYSSTYKEVISAKNKVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK 72
           DM     +++IS+  +V ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK
Sbjct: 11  DMACQLLQQLISSTMQVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK 70

Query: 73  AHGLALEISKDLYHLIKKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY 125
           AHGLA EI +DLYHLIKK V+IRKHLE+NRK+  SKFRLILVESRIHRLA Y
Sbjct: 71  AHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 122

[Close]
BLAST of Lcy10g004650 vs. NCBI nr
Match: XP_038906798.1 (40S ribosomal protein S13 [Benincasa hispida])

HSP 1 Score: 167.9 bits (424), Expect = 5.4e-38
Identity = 90/102 (88.24%), Postives = 95/102 (93.14%), Query Frame = 0 

Query: 23  ISAKNKVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLALEISK 82
           ISA++ VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA EI +
Sbjct: 28  ISAQD-VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPE 87

Query: 83  DLYHLIKKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY 125
           DLYHLIKK VSIRKHLE+NRK+  SKFRLILVESRIHRLA Y
Sbjct: 88  DLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

[Close]
BLAST of Lcy10g004650 vs. NCBI nr
Match: XP_022143980.1 (40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022964010.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_023000449.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023006177.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023514341.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >XP_023547500.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6574796.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013377.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6593712.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026051.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.2 bits (422), Expect = 9.2e-38
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 0 

Query: 29  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLALEISKDLYHLI 88
           VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA EI +DLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 89  KKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY 125
           KK VSIRKHLE+NRK+  SKFRLILVESRIHRLA Y
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

[Close]
BLAST of Lcy10g004650 vs. NCBI nr
Match: KAA0039994.1 (40S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK24507.1 40S ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 2.1e-37
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 0 

Query: 29  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLALEISKDLYHLI 88
           VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLA EI +DLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLI 92

Query: 89  KKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY 125
           KK VSIRKHLE+NRK+  SKFRLILVESRIHRLA Y
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

[Close]
BLAST of Lcy10g004650 vs. NCBI nr
Match: XP_004153746.1 (40S ribosomal protein S13 [Cucumis sativus] >XP_008460113.1 PREDICTED: 40S ribosomal protein S13 [Cucumis melo] >KGN46246.1 hypothetical protein Csa_005737 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 2.1e-37
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 0 

Query: 29  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLALEISKDLYHLI 88
           VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLA EI +DLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLI 92

Query: 89  KKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY 125
           KK VSIRKHLE+NRK+  SKFRLILVESRIHRLA Y
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

[Close]
BLAST of Lcy10g004650 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-39
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0 

Query: 29  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLALEISKDLYHLI 88
           V E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLA EI +DLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 89  KKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY 125
           KK V+IRKHLE+NRK+  SKFRLILVESRIHRLA Y
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

[Close]
BLAST of Lcy10g004650 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-39
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0 

Query: 29  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLALEISKDLYHLI 88
           V E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLA EI +DLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 89  KKVVSIRKHLEKNRKENGSKFRLILVESRIHRLAWY 125
           KK V+IRKHLE+NRK+  SKFRLILVESRIHRLA Y
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

[Close]
BLAST of Lcy10g004650 vs. TAIR 10
Match: AT5G12000.1 (Protein kinase protein with adenine nucleotide alpha hydrolases-like domain )

HSP 1 Score: 42.4 bits (98), Expect = 3.2e-04
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 1   MKRLKLELKKTMDMYSSTYKEVISAKNKVAE 32
           MKRLK+ELK+TMDMYSS  KE ++AK K  E
Sbjct: 295 MKRLKIELKQTMDMYSSACKEALNAKKKANE 325

[Close]
BLAST of Lcy10g004650 vs. TAIR 10
Match: AT5G26150.1 (protein kinase family protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.2e-04
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 1   MKRLKLELKKTMDMYSSTYKEVISAKNKVAE 32
           M+RLKLELK+TMDMYSS  KE ++AK K  E
Sbjct: 295 MRRLKLELKQTMDMYSSACKEALTAKRKANE 325

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BLAST of Lcy10g004650 vs. TAIR 10
Match: AT1G16760.1 (Protein kinase protein with adenine nucleotide alpha hydrolases-like domain )

HSP 1 Score: 41.2 bits (95), Expect = 7.1e-04
Identity = 19/31 (61.29%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 1   MKRLKLELKKTMDMYSSTYKEVISAKNKVAE 32
           MKRL+LELK+TMDMYSS  +E ++A+N+  E
Sbjct: 329 MKRLRLELKQTMDMYSSACREALTARNEATE 359

The following BLAST results are available for this feature:
BLAST of Lcy10g004650 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P623021.7e-3988.5440S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1[more]
P592231.9e-3886.4640S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1[more]
P592241.9e-3886.4640S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1[more]
P462983.3e-3887.5040S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1[more]
Q9WVH02.4e-3372.0040S ribosomal protein S13 OS=Cricetulus griseus OX=10029 GN=RPS13 PE=3 SV=3[more]
BLAST of Lcy10g004650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J9A5716.9e-3979.46Ribosomal_S13_N domain-containing protein OS=Gossypium laxum OX=34288 GN=Golax_0... [more]
A0A6J1KV634.5e-3890.6340S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 ... [more]
A0A6J1HJL34.5e-3890.6340S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=... [more]
A0A6J1CQC44.5e-3890.6340S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111013762 PE... [more]
A0A5A7T9679.9e-3889.5840S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
BLAST of Lcy10g004650 vs. NCBI nr
Match NameE-valueIdentityDescription
MBA0719002.11.4e-3879.46hypothetical protein [Gossypium laxum][more]
XP_038906798.15.4e-3888.2440S ribosomal protein S13 [Benincasa hispida][more]
XP_022143980.19.2e-3890.6340S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosom... [more]
KAA0039994.12.1e-3789.5840S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK24507.1 40S ribosomal p... [more]
XP_004153746.12.1e-3789.5840S ribosomal protein S13 [Cucumis sativus] >XP_008460113.1 PREDICTED: 40S ribos... [more]
BLAST of Lcy10g004650 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G60770.11.4e-3986.46Ribosomal protein S13/S15 [more]
AT4G00100.11.4e-3986.46ribosomal protein S13A [more]
AT5G12000.13.2e-0467.74Protein kinase protein with adenine nucleotide alpha hydrolases-like domain [more]
AT5G26150.14.2e-0467.74protein kinase family protein [more]
AT1G16760.17.1e-0461.29Protein kinase protein with adenine nucleotide alpha hydrolases-like domain [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 1..56
e-value: 5.1E-5
score: 31.1
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 24..56
e-value: 9.7E-13
score: 48.0
NoneNo IPR availableGENE3D4.10.860.130coord: 31..79
e-value: 1.2E-27
score: 97.3
NoneNo IPR availableGENE3D1.10.287.10coord: 80..124
e-value: 6.3E-20
score: 73.2
NoneNo IPR availablePANTHERPTHR11885:SF2540S RIBOSOMAL PROTEIN S13-1-RELATEDcoord: 25..124
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 25..124
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 62..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g004650.1Lcy10g004650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome