Lcy10g004490 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g004490
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr10: 10444939 .. 10445328 (-)
RNA-Seq ExpressionLcy10g004490
SyntenyLcy10g004490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTCTCGTTCTCCTCCTCTCGGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTCCCTCTTCCGCCGCCGCCTCCGCCGCCCTCTGCTTGTGACGCCGTGAAGCCGCCGCCGAGTGAGTGCCACAAGAGTCGGATCTGCTTCGATGAGACTGAAATGGATGAGTTTCTCAAGGACTCTAGGGTTTGTGTCGATTTAATTTGGCCCTAATTTCAAATTCGAGATACCTCCACTCCTGGATTTTTCTTCCCTATGTGGTTGCTCTGTAGTTGAATTGTAGTGTAGATTTATTTGTTCATATCTTTTTTCTTCTTCTCTTTTCAGAAAAAACTTGTCTGCATATGTCGGGATCTCTTTGCATACCACCGTTAA

mRNA sequence

ATGGCGTCTCTCGTTCTCCTCCTCTCGGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTCCCTCTTCCGCCGCCGCCTCCGCCGCCCTCTGCTTGTGACGCCGTGAAGCCGCCGCCGAGTGAGTGCCACAAGAGTCGGATCTGCTTCGATGAGACTGAAATGGATGAGTTTCTCAAGGACTCTAGGAAAAAACTTGTCTGCATATGTCGGGATCTCTTTGCATACCACCGTTAA

Coding sequence (CDS)

ATGGCGTCTCTCGTTCTCCTCCTCTCGGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTCCCTCTTCCGCCGCCGCCTCCGCCGCCCTCTGCTTGTGACGCCGTGAAGCCGCCGCCGAGTGAGTGCCACAAGAGTCGGATCTGCTTCGATGAGACTGAAATGGATGAGTTTCTCAAGGACTCTAGGAAAAAACTTGTCTGCATATGTCGGGATCTCTTTGCATACCACCGTTAA

Protein sequence

MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPPPSACDAVKPPPSECHKSRICFDETEMDEFLKDSRKKLVCICRDLFAYHR
Homology
BLAST of Lcy10g004490 vs. ExPASy TrEMBL
Match: A0A0A0LHI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPPPSACDAVKP-----PPSEC-----HKS 60
          MASL+LLLS+L+RHH+TNPDY LTLP PP   P S+  +        P S+C     +K+
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

Query: 61 RICFDETEMDEFLKDSRKKLVCICRDL 78
          RIC DE  MDEFLK+SR     +C DL
Sbjct: 61 RICADENVMDEFLKESR-----VCVDL 82

BLAST of Lcy10g004490 vs. NCBI nr
Match: XP_038904495.1 (uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida])

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-15
Identity = 49/73 (67.12%), Postives = 55/73 (75.34%), Query Frame = 0

Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPPPSACDAVKP----PPSECH--KSRICF 60
          MASLVLLLSEL+RHHNTNPDYWLT+PLPPPP PP    +V      P   C+  KSRIC 
Sbjct: 1  MASLVLLLSELLRHHNTNPDYWLTIPLPPPPSPPRTSSSVAGKSLLPSERCYSNKSRICA 60

Query: 61 DETEMDEFLKDSR 68
          DET +DEFLK+SR
Sbjct: 61 DETVIDEFLKESR 73

BLAST of Lcy10g004490 vs. NCBI nr
Match: KAE8651190.1 (hypothetical protein Csa_001669 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 5.9e-09
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPPPSACDAVKP-----PPSEC-----HKS 60
          MASL+LLLS+L+RHH+TNPDY LTLP PP   P S+  +        P S+C     +K+
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

Query: 61 RICFDETEMDEFLKDSR 68
          RIC DE  MDEFLK+SR
Sbjct: 61 RICADENVMDEFLKESR 77

BLAST of Lcy10g004490 vs. NCBI nr
Match: KAG6580906.1 (hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLP-PPPPPPSACDAV-KPPPSECHKS 51
          MASLVLLLSELVRHHNTNPDYWLTLPLP P PPPPS+  AV K   S+C  +
Sbjct: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPSPTPPPPSSDSAVAKSLSSKCQNN 52

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LHI41.3e-0951.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_038904495.11.5e-1567.12uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida][more]
KAE8651190.15.9e-0954.55hypothetical protein Csa_001669 [Cucumis sativus][more]
KAG6580906.11.7e-0875.00hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g004490.1Lcy10g004490.1mRNA