Lcy10g003650 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g003650
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	YMF19 domain-containing protein
Location	Chr10: 6604694 .. 6605311 (+)
RNA-Seq Expression	Lcy10g003650
Synteny	Lcy10g003650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACTGAACCCCTCCGCGGATGGGTGGAGGAGAGAAAGGAGAACCCTAATCTCCTAAAATCCCTCATTAGGGAGTCTGCCGCTTTCTTTCATAACAGAGCCGAGAATAACGGCTGGCATAGTTGTCTCTCGCATGCAAGGAGATGCTGCTGCTGGATGTCACGGTTCTGGGGCGCCATGATCCTTTTCTCTGGAACAATCGAGGGCACTGCCTTCCTTCCGCTTTCAGAGGTAGGGACTTCAGAAATCATCGCTCAGTGAGCTATTTATTGCCGCCAATAGCGCTTCGCTTGCACGCCAGCGCCACGCCTGGTAGAGCTATCGCGCGCGGGCGAAGGAGATGCATTTTTTGTACTGGTAGTACTGGACAAGCTCAGAGGGAATAATATCTTTCTTATTTCTGCCTTTCTTTCCCACGACGACTAGGAACAGGCAAATCAAAAATTTCACTTCGAATTCCGGACCTCAACATCCTGCTGCTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACATGCGGAACCACATATTGGATTACTCCAGTGCGGCACATTTTTAATGGTTATGTTGTGTGTGACAGTGACAGCTACATTGAATAA

mRNA sequence

ATGGATACTGAACCCCTCCGCGGATGGGTGGAGGAGAGAAAGGAGAACCCTAATCTCCTAAAATCCCTCATTAGGGAGTCTGCCGCTTTCTTTCATAACAGAGCCGAGAATAACGGCTGGCATAGTTGTCTCTCGCATGCAAGGAGATGCTGCTGCTGGATGTCACGGTTCTGGGGCGCCATGATCCTTTTCTCTGGAACAATCGAGGGCACTGCCTTCCTTCCGCTTTCAGAGGAACAGGCAAATCAAAAATTTCACTTCGAATTCCGGACCTCAACATCCTGCTGCTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACATGCGGAACCACATATTGGATTACTCCAGTGCGGCACATTTTTAATGGTTATGTTGTGTGTGACAGTGACAGCTACATTGAATAA

Coding sequence (CDS)

ATGGATACTGAACCCCTCCGCGGATGGGTGGAGGAGAGAAAGGAGAACCCTAATCTCCTAAAATCCCTCATTAGGGAGTCTGCCGCTTTCTTTCATAACAGAGCCGAGAATAACGGCTGGCATAGTTGTCTCTCGCATGCAAGGAGATGCTGCTGCTGGATGTCACGGTTCTGGGGCGCCATGATCCTTTTCTCTGGAACAATCGAGGGCACTGCCTTCCTTCCGCTTTCAGAGGAACAGGCAAATCAAAAATTTCACTTCGAATTCCGGACCTCAACATCCTGCTGCTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACATGCGGAACCACATATTGGATTACTCCAGTGCGGCACATTTTTAATGGTTATGTTGTGTGTGACAGTGACAGCTACATTGAATAA

Protein sequence

MDTEPLRGWVEERKENPNLLKSLIRESAAFFHNRAENNGWHSCLSHARRCCCWMSRFWGAMILFSGTIEGTAFLPLSEEQANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRHIFNGYVVCDSDSYIE

Homology

[Close]

BLAST of Lcy10g003650 vs. ExPASy TrEMBL
Match: A0A5D3CE05 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold79316G00010 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.2e-32
Identity = 78/118 (66.10%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 19  LLKSLIRESAAFFHNRAENNGWHSCLSHARRCCCWMSRFWGAMILFSGTIE-------GT 78
           LLKSLIRESAAFFHN AEN GWHSCLSHARRCCCWMSRFWGAMILFSGT E       G+
Sbjct: 8   LLKSLIRESAAFFHNGAENKGWHSCLSHARRCCCWMSRFWGAMILFSGTREVRICETKGS 67

Query: 79  AFLP----LSEEQANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH 126
             L      SEE+A   F F+              SIGNERRSGGTCGT YWITPVRH
Sbjct: 68  KNLRDQSIKSEERALPSFRFQ--------------SIGNERRSGGTCGTPYWITPVRH 111

[Close]

BLAST of Lcy10g003650 vs. ExPASy TrEMBL
Match: A0A385G281 (Uncharacterized protein OS=Ammopiptanthus mongolicus OX=126911 GN=amoMp16 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 68  IEGTAFLPLSEEQANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH 126
           +EG AFL    E+ANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH
Sbjct: 118 VEGDAFL----ERANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH 171

[Close]

BLAST of Lcy10g003650 vs. ExPASy TrEMBL
Match: A0A328DBI3 (Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_010047 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 76  LSEEQANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH 126
           LS EQANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH
Sbjct: 46  LSHEQANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH 95

[Close]

BLAST of Lcy10g003650 vs. ExPASy TrEMBL
Match: A0A2H5QV90 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_265020 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.6e-21
Identity = 52/67 (77.61%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 59  GAMILFSGTIEGTAFLPLSEEQANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTY 118
           G  +  S   EG AFL    E+AN KFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTY
Sbjct: 149 GKAVELSRAGEGDAFL----ERANPKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTY 208

Query: 119 WITPVRH 126
           WITPVRH
Sbjct: 209 WITPVRH 211

[Close]

BLAST of Lcy10g003650 vs. ExPASy TrEMBL
Match: A0A5J4ZTU2 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_012453 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.1e-20
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 78  EEQANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH 126
           +EQAN+KFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH
Sbjct: 97  KEQANKKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH 144

[Close]

BLAST of Lcy10g003650 vs. NCBI nr
Match: TYK08579.1 (hypothetical protein E5676_scaffold79316G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 147.9 bits (372), Expect = 6.5e-32
Identity = 78/118 (66.10%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 19  LLKSLIRESAAFFHNRAENNGWHSCLSHARRCCCWMSRFWGAMILFSGTIE-------GT 78
           LLKSLIRESAAFFHN AEN GWHSCLSHARRCCCWMSRFWGAMILFSGT E       G+
Sbjct: 8   LLKSLIRESAAFFHNGAENKGWHSCLSHARRCCCWMSRFWGAMILFSGTREVRICETKGS 67

Query: 79  AFLP----LSEEQANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH 126
             L      SEE+A   F F+              SIGNERRSGGTCGT YWITPVRH
Sbjct: 68  KNLRDQSIKSEERALPSFRFQ--------------SIGNERRSGGTCGTPYWITPVRH 111

[Close]

BLAST of Lcy10g003650 vs. NCBI nr
Match: RAL41253.1 (hypothetical protein DM860_010047 [Cuscuta australis])

HSP 1 Score: 112.8 bits (281), Expect = 2.3e-21
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 76  LSEEQANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH 126
           LS EQANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH
Sbjct: 46  LSHEQANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH 95

[Close]

BLAST of Lcy10g003650 vs. NCBI nr
Match: YP_009526548.1 (hypothetical protein [Ammopiptanthus mongolicus] >AXV54307.1 hypothetical protein [Ammopiptanthus mongolicus])

HSP 1 Score: 112.8 bits (281), Expect = 2.3e-21
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 68  IEGTAFLPLSEEQANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH 126
           +EG AFL    E+ANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH
Sbjct: 118 VEGDAFL----ERANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH 171

[Close]

BLAST of Lcy10g003650 vs. NCBI nr
Match: GAY68548.1 (hypothetical protein CUMW_265020 [Citrus unshiu])

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-20
Identity = 52/67 (77.61%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 59  GAMILFSGTIEGTAFLPLSEEQANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTY 118
           G  +  S   EG AFL    E+AN KFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTY
Sbjct: 149 GKAVELSRAGEGDAFL----ERANPKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTY 208

Query: 119 WITPVRH 126
           WITPVRH
Sbjct: 209 WITPVRH 211

[Close]

BLAST of Lcy10g003650 vs. NCBI nr
Match: KAA8521780.1 (hypothetical protein F0562_012453 [Nyssa sinensis])

HSP 1 Score: 108.6 bits (270), Expect = 4.4e-20
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 78  EEQANQKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH 126
           +EQAN+KFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH
Sbjct: 97  KEQANKKFHFEFRTSTSCCSWCFTISIGNERRSGGTCGTTYWITPVRH 144

The following BLAST results are available for this feature:

BLAST of Lcy10g003650 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g003650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CE05	3.2e-32	66.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A385G281	1.1e-21	87.93	Uncharacterized protein OS=Ammopiptanthus mongolicus OX=126911 GN=amoMp16 PE=3 S...	[more]
A0A328DBI3	1.1e-21	98.00	Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_010047 PE=4 SV=1	[more]
A0A2H5QV90	5.6e-21	77.61	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_265020 PE=4 SV=1	[more]
A0A5J4ZTU2	2.1e-20	95.83	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_012453 PE=4 SV=1	[more]

BLAST of Lcy10g003650 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK08579.1	6.5e-32	66.10	hypothetical protein E5676_scaffold79316G00010 [Cucumis melo var. makuwa]	[more]
RAL41253.1	2.3e-21	98.00	hypothetical protein DM860_010047 [Cuscuta australis]	[more]
YP_009526548.1	2.3e-21	87.93	hypothetical protein [Ammopiptanthus mongolicus] >AXV54307.1 hypothetical protei...	[more]
GAY68548.1	1.2e-20	77.61	hypothetical protein CUMW_265020 [Citrus unshiu]	[more]
KAA8521780.1	4.4e-20	95.83	hypothetical protein F0562_012453 [Nyssa sinensis]	[more]

BLAST of Lcy10g003650 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g003650.1	Lcy10g003650.1	mRNA