Lcy10g002800 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g002800
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description50S ribosomal protein L16, chloroplastic
LocationChr10: 4125930 .. 4126283 (-)
RNA-Seq ExpressionLcy10g002800
SyntenyLcy10g002800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGAATATCTTCTCGAGGCAATCGTATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGGGTGGAGTAGCAGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCGTCTCACTCCACTCATTGTCAATTAGTTTTGAGATAG

mRNA sequence

ATGAAAGGAATATCTTCTCGAGGCAATCGTATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGGGTGGAGTAGCAGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCGTCTCACTCCACTCATTGTCAATTAGTTTTGAGATAG

Coding sequence (CDS)

ATGAAAGGAATATCTTCTCGAGGCAATCGTATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGGGTGGAGTAGCAGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCGTCTCACTCCACTCATTGTCAATTAGTTTTGAGATAG

Protein sequence

MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASHSTHCQLVLR
Homology
[Close]
BLAST of Lcy10g002800 vs. ExPASy Swiss-Prot
Match: B1NWI7 (50S ribosomal protein L16, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.1e-55
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 0 

Query: 1   MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGI+ RGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 17  MKGIAFRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 108
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS
Sbjct: 77  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 123

[Close]
BLAST of Lcy10g002800 vs. ExPASy Swiss-Prot
Match: A4GYU8 (50S ribosomal protein L16, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.2e-55
Identity = 102/107 (95.33%), Postives = 106/107 (99.07%), Query Frame = 0 

Query: 1   MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISSRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTL
Sbjct: 17  MKGISSRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTL 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 108
           RP+ETRMGSGKGSPEYWVAVVKPGR++YEMGGVAENIARKAISIAAS
Sbjct: 77  RPSETRMGSGKGSPEYWVAVVKPGRMIYEMGGVAENIARKAISIAAS 123

[Close]
BLAST of Lcy10g002800 vs. ExPASy Swiss-Prot
Match: Q0ZIY1 (50S ribosomal protein L16, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.2e-55
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 0 

Query: 1   MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGIS RGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+
Sbjct: 17  MKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 108
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS
Sbjct: 77  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 123

[Close]
BLAST of Lcy10g002800 vs. ExPASy Swiss-Prot
Match: Q4VZN1 (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-54
Identity = 104/107 (97.20%), Postives = 104/107 (97.20%), Query Frame = 0 

Query: 1   MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGIS RGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 17  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 108
           RPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARKAISIAAS
Sbjct: 77  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAAS 123

[Close]
BLAST of Lcy10g002800 vs. ExPASy Swiss-Prot
Match: Q49KW1 (50S ribosomal protein L16, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-54
Identity = 102/107 (95.33%), Postives = 105/107 (98.13%), Query Frame = 0 

Query: 1   MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGIS RGNRICFG+YA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+
Sbjct: 17  MKGISYRGNRICFGKYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 108
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS
Sbjct: 77  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 123

[Close]
BLAST of Lcy10g002800 vs. ExPASy TrEMBL
Match: A0A7D5BX27 (50S ribosomal protein L16, chloroplastic OS=Luffa acutangula OX=56866 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.2e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 18  MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 77

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 108
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS
Sbjct: 78  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 124

[Close]
BLAST of Lcy10g002800 vs. ExPASy TrEMBL
Match: A0A6H0EQQ6 (50S ribosomal protein L16, chloroplastic OS=Luffa aegyptiaca OX=3670 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.2e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 17  MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 108
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS
Sbjct: 77  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 123

[Close]
BLAST of Lcy10g002800 vs. ExPASy TrEMBL
Match: A0A7D4XZM2 (50S ribosomal protein L16, chloroplastic OS=Luffa aegyptiaca OX=3670 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.2e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 18  MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 77

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 108
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS
Sbjct: 78  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 124

[Close]
BLAST of Lcy10g002800 vs. ExPASy TrEMBL
Match: A0A6H0EVV2 (50S ribosomal protein L16, chloroplastic OS=Gerrardanthus macrorhizus OX=386173 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.2e-53
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0 

Query: 1   MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTL
Sbjct: 17  MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTL 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 108
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS
Sbjct: 77  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 123

[Close]
BLAST of Lcy10g002800 vs. ExPASy TrEMBL
Match: A0A6H0EQG8 (50S ribosomal protein L16, chloroplastic OS=Indofevillea khasiana OX=383665 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.1e-53
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0 

Query: 1   MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGIS RGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 17  MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 108
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS
Sbjct: 77  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 123

[Close]
BLAST of Lcy10g002800 vs. NCBI nr
Match: QIT04087.1 (ribosomal protein L16 [Luffa aegyptiaca])

HSP 1 Score: 220.3 bits (560), Expect = 8.6e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 17  MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 108
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS
Sbjct: 77  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 123

[Close]
BLAST of Lcy10g002800 vs. NCBI nr
Match: QKX48598.1 (ribosomal protein L16 [Luffa aegyptiaca])

HSP 1 Score: 220.3 bits (560), Expect = 8.6e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 18  MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 77

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 108
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS
Sbjct: 78  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 124

[Close]
BLAST of Lcy10g002800 vs. NCBI nr
Match: QKX48512.1 (ribosomal protein L16 [Luffa acutangula])

HSP 1 Score: 220.3 bits (560), Expect = 8.6e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 18  MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 77

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 108
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS
Sbjct: 78  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 124

[Close]
BLAST of Lcy10g002800 vs. NCBI nr
Match: YP_009753041.1 (ribosomal protein L16 [Gerrardanthus macrorhizus] >QIT06113.1 ribosomal protein L16 [Gerrardanthus macrorhizus])

HSP 1 Score: 218.8 bits (556), Expect = 2.5e-53
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0 

Query: 1   MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTL
Sbjct: 17  MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTL 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 108
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS
Sbjct: 77  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 123

[Close]
BLAST of Lcy10g002800 vs. NCBI nr
Match: YP_009752703.1 (ribosomal protein L16 [Ampelosycios humblotii] >YP_009753295.1 ribosomal protein L16 [Nothoalsomitra suberosa] >QIT05184.1 ribosomal protein L16 [Ampelosycios humblotii] >QIT06367.1 ribosomal protein L16 [Nothoalsomitra suberosa])

HSP 1 Score: 218.0 bits (554), Expect = 4.3e-53
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0 

Query: 1   MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGIS RGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 17  MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 108
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS
Sbjct: 77  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 123

[Close]
BLAST of Lcy10g002800 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 209.1 bits (531), Expect = 1.9e-54
Identity = 99/107 (92.52%), Postives = 103/107 (96.26%), Query Frame = 0 

Query: 1   MKGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           +KGISSRGNRICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+
Sbjct: 17  LKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 108
           RP ETRMGSGKGSPEYWVAVVKPG+ILYEMGGV ENIARKAISIAAS
Sbjct: 77  RPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAAS 123

[Close]
BLAST of Lcy10g002800 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 155.6 bits (392), Expect = 2.4e-38
Identity = 78/106 (73.58%), Postives = 90/106 (84.91%), Query Frame = 0 

Query: 2   KGISSRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLR 61
           KG+SS+G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG  + V IF DKPVT+R
Sbjct: 847 KGVSSQG-YIC-SRYALQTLEPAWITSRQIEAGRRAMTRNIGRGLTVRVHIFADKPVTVR 906

Query: 62  PTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAAS 108
           P ETRMG GKG+P +WVAVVKPG+I+YEMGGV+E +AR+AISIAAS
Sbjct: 907 PPETRMGRGKGAPAFWVAVVKPGKIIYEMGGVSEKVAREAISIAAS 950

[Close]
BLAST of Lcy10g002800 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 97.4 bits (241), Expect = 7.9e-21
Identity = 50/113 (44.25%), Postives = 70/113 (61.95%), Query Frame = 0 

Query: 2   KGISSRGNRICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIF 61
           +G    G ++ FGRY  ++ +   ++ R IEA R        RAM+   RR GKIWVR+F
Sbjct: 54  RGCKPDGTKLGFGRYGTKSCKAGRLSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWVRVF 113

Query: 62  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA 107
            D P+T +PTE RMG GKG+P  W+A V  G+I +EM GV+   AR+A ++AA
Sbjct: 114 ADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLANARQAATLAA 166

The following BLAST results are available for this feature:
BLAST of Lcy10g002800 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B1NWI72.1e-5597.2050S ribosomal protein L16, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl16 P... [more]
A4GYU86.2e-5595.3350S ribosomal protein L16, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl16... [more]
Q0ZIY16.2e-5596.2650S ribosomal protein L16, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl16 PE=... [more]
Q4VZN11.4e-5497.2050S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=... [more]
Q49KW11.4e-5495.3350S ribosomal protein L16, chloroplastic OS=Eucalyptus globulus subsp. globulus ... [more]
BLAST of Lcy10g002800 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7D5BX274.2e-54100.0050S ribosomal protein L16, chloroplastic OS=Luffa acutangula OX=56866 GN=rpl16 P... [more]
A0A6H0EQQ64.2e-54100.0050S ribosomal protein L16, chloroplastic OS=Luffa aegyptiaca OX=3670 GN=rpl16 PE... [more]
A0A7D4XZM24.2e-54100.0050S ribosomal protein L16, chloroplastic OS=Luffa aegyptiaca OX=3670 GN=rpl16 PE... [more]
A0A6H0EVV21.2e-5399.0750S ribosomal protein L16, chloroplastic OS=Gerrardanthus macrorhizus OX=386173 ... [more]
A0A6H0EQG82.1e-5399.0750S ribosomal protein L16, chloroplastic OS=Indofevillea khasiana OX=383665 GN=r... [more]
BLAST of Lcy10g002800 vs. NCBI nr
Match NameE-valueIdentityDescription
QIT04087.18.6e-54100.00ribosomal protein L16 [Luffa aegyptiaca][more]
QKX48598.18.6e-54100.00ribosomal protein L16 [Luffa aegyptiaca][more]
QKX48512.18.6e-54100.00ribosomal protein L16 [Luffa acutangula][more]
YP_009753041.12.5e-5399.07ribosomal protein L16 [Gerrardanthus macrorhizus] >QIT06113.1 ribosomal protein ... [more]
YP_009752703.14.3e-5399.07ribosomal protein L16 [Ampelosycios humblotii] >YP_009753295.1 ribosomal protein... [more]
BLAST of Lcy10g002800 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00790.11.9e-5492.52ribosomal protein L16 [more]
AT2G28830.12.4e-3873.58PLANT U-BOX 12 [more]
ATMG00080.17.9e-2144.25ribosomal protein L16 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000114Ribosomal protein L16PRINTSPR00060RIBOSOMALL16coord: 26..37
score: 71.5
coord: 72..101
score: 58.73
coord: 8..20
score: 47.85
coord: 42..71
score: 67.87
IPR000114Ribosomal protein L16TIGRFAMTIGR01164TIGR01164coord: 1..107
e-value: 5.4E-50
score: 166.7
IPR000114Ribosomal protein L16PANTHERPTHR1222050S/60S RIBOSOMAL PROTEIN L16coord: 1..108
IPR036920Ribosomal protein L10e/L16 superfamilyGENE3D3.90.1170.10Ribosomal protein L10e/L16coord: 1..115
e-value: 5.1E-50
score: 171.9
IPR036920Ribosomal protein L10e/L16 superfamilySUPERFAMILY54686Ribosomal protein L16p/L10ecoord: 1..107
IPR016180Ribosomal protein L10e/L16PFAMPF00252Ribosomal_L16coord: 1..107
e-value: 1.8E-39
score: 134.8
IPR016180Ribosomal protein L10e/L16CDDcd01433Ribosomal_L16_L10ecoord: 7..107
e-value: 1.74289E-47
score: 146.097
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00701RIBOSOMAL_L16_2coord: 66..77
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00586RIBOSOMAL_L16_1coord: 43..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g002800.1Lcy10g002800.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome