Lcy10g002610 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g002610
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr10: 3797965 .. 3798445 (+)
RNA-Seq ExpressionLcy10g002610
SyntenyLcy10g002610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCACTCAATCCTTTCTCTTCCCTCTTTCTTCTTCCTTTTTGTTGTTCTTCTTGTTTCTGCCATGGCAGCAGCTTCTTCCACAGGATTAAAGGGGAAGATCTCAAGCCTTCCCCCAAAACGGGGTCGTATTAAGGCTCAGATTTTTGAGAGCCTTGTCAACTCGGCAGCCTTGGCCGCCTTCATGGCCGAAGAAATCCTCTGCAGAGTCATCCGAGACCTCGTCGGCGCCGGCAGAACCGACGCCGTCACGCCGCCTTCTCCGCCGGCGCCGCCACCTCCTCTTATTTTTGATGGAGGCTCCGTCGTCACGTGATACCCCCACCCTCTCTTACTACTGCGTTTTAATTGGTCGGAGATGGGATTTCTGCTGTGTTCTTGCTCATTTTTTGAGGAGCTATAGATTTGTAATTTCTTTTTTTCCCTTTTTTTTCATAATTTTTGGCTCTTGTGTGGTGTGGTTTTTTTTTTTTTTTTTTTTT

mRNA sequence

CATCACTCAATCCTTTCTCTTCCCTCTTTCTTCTTCCTTTTTGTTGTTCTTCTTGTTTCTGCCATGGCAGCAGCTTCTTCCACAGGATTAAAGGGGAAGATCTCAAGCCTTCCCCCAAAACGGGGTCGTATTAAGGCTCAGATTTTTGAGAGCCTTGTCAACTCGGCAGCCTTGGCCGCCTTCATGGCCGAAGAAATCCTCTGCAGAGTCATCCGAGACCTCGTCGGCGCCGGCAGAACCGACGCCGTCACGCCGCCTTCTCCGCCGGCGCCGCCACCTCCTCTTATTTTTGATGGAGGCTCCGTCGTCACGTGATACCCCCACCCTCTCTTACTACTGCGTTTTAATTGGTCGGAGATGGGATTTCTGCTGTGTTCTTGCTCATTTTTTGAGGAGCTATAGATTTGTAATTTCTTTTTTTCCCTTTTTTTTCATAATTTTTGGCTCTTGTGTGGTGTGGTTTTTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGCAGCAGCTTCTTCCACAGGATTAAAGGGGAAGATCTCAAGCCTTCCCCCAAAACGGGGTCGTATTAAGGCTCAGATTTTTGAGAGCCTTGTCAACTCGGCAGCCTTGGCCGCCTTCATGGCCGAAGAAATCCTCTGCAGAGTCATCCGAGACCTCGTCGGCGCCGGCAGAACCGACGCCGTCACGCCGCCTTCTCCGCCGGCGCCGCCACCTCCTCTTATTTTTGATGGAGGCTCCGTCGTCACGTGA

Protein sequence

MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRVIRDLVGAGRTDAVTPPSPPAPPPPLIFDGGSVVT
Homology
BLAST of Lcy10g002610 vs. ExPASy TrEMBL
Match: A0A0A0LS06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 9.6e-21
Identity = 62/80 (77.50%), Postives = 64/80 (80.00%), Query Frame = 0

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRVIRDLVGAGRTD 60
          MAAASST  KGKI +LPPKRGRIKAQI ESLVNSAALA FMAEEILCR IRDLV + RT 
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSART- 60

Query: 61 AVTPPSPPAPPPPLIFDGGS 81
             PP  PAPPPPLIF G S
Sbjct: 61 VDAPPPYPAPPPPLIFHGVS 79

BLAST of Lcy10g002610 vs. ExPASy TrEMBL
Match: A0A371H193 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_20760 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.3e-04
Identity = 29/55 (52.73%), Postives = 35/55 (63.64%), Query Frame = 0

Query: 12 KISSLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRVIRDLVGAGRTDAVTPPS 67
          K +SLPPKRG+IKAQ+F SLVNS A A     E L  VI +  G+G   +  PPS
Sbjct: 14 KKASLPPKRGQIKAQVFNSLVNSVASAISKTRESLRNVIANGGGSGSASSTPPPS 68

BLAST of Lcy10g002610 vs. NCBI nr
Match: KAE8653222.1 (hypothetical protein Csa_019661, partial [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 7.3e-23
Identity = 62/77 (80.52%), Postives = 65/77 (84.42%), Query Frame = 0

Query: 4  ASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRVIRDLVGAGRTDAVT 63
          ASST  KGKIS+LPPKRGRIKAQIFESLVNSAALAAFMAEEILCR+IRDLV   RT  V 
Sbjct: 1  ASSTSSKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTGARTVDVP 60

Query: 64 PPSPPAPPPPLIFDGGS 81
          PP+P  PPPPLIF G S
Sbjct: 61 PPTPARPPPPLIFHGSS 77

BLAST of Lcy10g002610 vs. NCBI nr
Match: KAG6583308.1 (hypothetical protein SDJN03_19240, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-16
Identity = 58/84 (69.05%), Postives = 63/84 (75.00%), Query Frame = 0

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRVIRDLVGAGRTD 60
          MAAA STGLK  ISSLPP+RGRIKA+IFESLVNSAAL       IL +VIR LV   +  
Sbjct: 1  MAAAPSTGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILFKVIRYLVSGAQIR 60

Query: 61 AVTPPSPPA-PPPPLIFDGGSVVT 84
          AV PPSP A PPPPL +DGGSVVT
Sbjct: 61 AVLPPSPMAPPPPPLRYDGGSVVT 77

BLAST of Lcy10g002610 vs. NCBI nr
Match: KAG6583309.1 (hypothetical protein SDJN03_19241, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 6.6e-16
Identity = 58/84 (69.05%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRVIRDLVGAGRTD 60
          MAAA STGLK  ISSLPP+RGRIKA+IFESLVNSAAL       IL +VIR LV   R  
Sbjct: 1  MAAARSTGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILFKVIRYLVSGARVH 60

Query: 61 AVTPPSPPAP-PPPLIFDGGSVVT 84
          AV  PSP AP PPPL +DGGSVVT
Sbjct: 61 AVPLPSPVAPLPPPLRYDGGSVVT 77

BLAST of Lcy10g002610 vs. NCBI nr
Match: KAG6583472.1 (hypothetical protein SDJN03_19404, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.1 bits (222), Expect = 9.6e-15
Identity = 56/84 (66.67%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRVIRDLVGAGRTD 60
          MAAA S GLK  ISSLPP+RGRIKA+IFESLVNSAAL       IL +VIR LV + +  
Sbjct: 1  MAAAPSMGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILLKVIRYLVSSAQIR 60

Query: 61 AVTPPSPPA-PPPPLIFDGGSVVT 84
          AV  PSP A PPPPL +DGGSVVT
Sbjct: 61 AVPLPSPVAPPPPPLRYDGGSVVT 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LS069.6e-2177.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1[more]
A0A371H1936.3e-0452.73Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_20760 P... [more]
Match NameE-valueIdentityDescription
KAE8653222.17.3e-2380.52hypothetical protein Csa_019661, partial [Cucumis sativus][more]
KAG6583308.12.3e-1669.05hypothetical protein SDJN03_19240, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583309.16.6e-1669.05hypothetical protein SDJN03_19241, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583472.19.6e-1566.67hypothetical protein SDJN03_19404, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g002610.1Lcy10g002610.1mRNA