Lcy10g002590 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g002590
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr10: 3742595 .. 3743096 (+)
RNA-Seq Expression	Lcy10g002590
Synteny	Lcy10g002590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTATCTTCGGAAATGGCTTCTGCGGCCCCAAGTCGGCAGTTTCCAAACAACCCACCAAAAAGGGGTCAGATCTCGGCCAGGATTCGTGACGATTTGGCCACCTCAGCAGCCGCTGCAGCAACCTATGTCACCGCCGCACTCGCCGGATTCATCCCAGATCGTACTCCGCCGGAACTTGCTCTGCCGCCACCGCCGCCGCCGCCCGCAGCTGGTACCTAGACCGTCTTCAACCTTGAGCCCCAGTAATAAACACAGCTAGCTATTTGCTCTCATTGACCAACAATTTATCCCCCATCTACTGTAATTAATTATCTGTAAATTATGAGTTTTAATTTCTTTTACTTTTTCTTTTTTTTTTTCCTGGTAATTTTCAGCTCAATATCTGTTTGTTGGTTCAGTGACCAAATCTCTCAGCTGCTGTATTTATATATGTAAATTAAAAAGTGTGTGCTTTATTTGACATTTTGATTTCTACTCTATTCTGGGTAATTCTAAGCTCA

mRNA sequence

GGGTATCTTCGGAAATGGCTTCTGCGGCCCCAAGTCGGCAGTTTCCAAACAACCCACCAAAAAGGGGTCAGATCTCGGCCAGGATTCGTGACGATTTGGCCACCTCAGCAGCCGCTGCAGCAACCTATGTCACCGCCGCACTCGCCGGATTCATCCCAGATCGTACTCCGCCGGAACTTGCTCTGCCGCCACCGCCGCCGCCGCCCGCAGCTGGTACCTAGACCGTCTTCAACCTTGAGCCCCAGTAATAAACACAGCTAGCTATTTGCTCTCATTGACCAACAATTTATCCCCCATCTACTGTAATTAATTATCTGTAAATTATGAGTTTTAATTTCTTTTACTTTTTCTTTTTTTTTTTCCTGGTAATTTTCAGCTCAATATCTGTTTGTTGGTTCAGTGACCAAATCTCTCAGCTGCTGTATTTATATATGTAAATTAAAAAGTGTGTGCTTTATTTGACATTTTGATTTCTACTCTATTCTGGGTAATTCTAAGCTCA

Coding sequence (CDS)

ATGGCTTCTGCGGCCCCAAGTCGGCAGTTTCCAAACAACCCACCAAAAAGGGGTCAGATCTCGGCCAGGATTCGTGACGATTTGGCCACCTCAGCAGCCGCTGCAGCAACCTATGTCACCGCCGCACTCGCCGGATTCATCCCAGATCGTACTCCGCCGGAACTTGCTCTGCCGCCACCGCCGCCGCCGCCCGCAGCTGGTACCTAG

Protein sequence

MASAAPSRQFPNNPPKRGQISARIRDDLATSAAAAATYVTAALAGFIPDRTPPELALPPPPPPPAAGT

Homology

[Close]

BLAST of Lcy10g002590 vs. ExPASy TrEMBL
Match: A0A0A0LX95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G479110 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.1e-09
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 12 NNPPKRGQISARIRDDLATSAAAAATYVTAALAGFIPDRTPPELALPPPPPPPAAG 68
          NNPP+RG+I A+I +DLATSAA AA+YV AALAG IPD  PP +  PPPPPPPA G
Sbjct: 7  NNPPRRGRIMAKIGEDLATSAATAASYVVAALAGLIPD-PPPPVHAPPPPPPPAGG 61

[Close]

BLAST of Lcy10g002590 vs. ExPASy TrEMBL
Match: A0A5D3BXB9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00050 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.8e-07
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 12 NNPPKRGQISARIRDDLATSAAAAATYVTAALAGFIPDRTPPELALP 59
          NNPPKRG+I A+I +DLATSAA AA+YV AALAG IPDR PP    P
Sbjct: 7  NNPPKRGKIKAKIGEDLATSAATAASYVVAALAGLIPDRPPPNHGPP 53

[Close]

BLAST of Lcy10g002590 vs. NCBI nr
Match: KGN65654.1 (hypothetical protein Csa_019816 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 6.4e-09
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 12 NNPPKRGQISARIRDDLATSAAAAATYVTAALAGFIPDRTPPELALPPPPPPPAAG 68
          NNPP+RG+I A+I +DLATSAA AA+YV AALAG IPD  PP +  PPPPPPPA G
Sbjct: 7  NNPPRRGRIMAKIGEDLATSAATAASYVVAALAGLIPD-PPPPVHAPPPPPPPAGG 61

[Close]

BLAST of Lcy10g002590 vs. NCBI nr
Match: TYK02876.1 (hypothetical protein E5676_scaffold968G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 7.9e-07
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 12 NNPPKRGQISARIRDDLATSAAAAATYVTAALAGFIPDRTPPELALP 59
          NNPPKRG+I A+I +DLATSAA AA+YV AALAG IPDR PP    P
Sbjct: 7  NNPPKRGKIKAKIGEDLATSAATAASYVVAALAGLIPDRPPPNHGPP 53

The following BLAST results are available for this feature:

BLAST of Lcy10g002590 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g002590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX95	3.1e-09	69.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G479110 PE=4 SV=1	[more]
A0A5D3BXB9	3.8e-07	70.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lcy10g002590 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65654.1	6.4e-09	69.64	hypothetical protein Csa_019816 [Cucumis sativus]	[more]
TYK02876.1	7.9e-07	70.21	hypothetical protein E5676_scaffold968G00050 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy10g002590 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g002590.1	Lcy10g002590.1	mRNA