Lcy10g002400 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g002400
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionHistone H2A
LocationChr10: 3327683 .. 3328893 (+)
RNA-Seq ExpressionLcy10g002400
SyntenyLcy10g002400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAATCCTTCCCGCAAATCCAAATCTTCTCATCGTTATATCCATTTTCCTGTAAATTCCTTCCTCTTCCTTTGATTTTTCCGGCGACCAGCTCAAGTTCCGATGGACACCGGCGGCAAGTTAAAAAAGGGAGCTGGTGGCAGAAAGGGCGGCGGCCCCAAGAAGAAGCCGGTTTCCCGCTCCGTCAAGGCCGGCCTTCAGTTCCCCGTCGGTAGGATTGGTCGATACTTGAAGAATGGCCGGTATGCTCAACGTGTCGGTACCGGAGCTCCGGTCTACTTGGCTGCCGTTCTCGAGTATCTCGCCGCTGAGGTATCTGCTGAAGTCCTTTTGCTCTCTCAGATCTGTGTTTCTTTCTGTTTAATGTGGATGAGGTTTTCATGCGTGCTGAGTTAGGGCTTCGAGTTTAATTCTGGAACTAGATTCTTAACTCGTCGATTGACTGTTACTACTTTGAATTTTGCCATACTATTAGGCCAAAAATTAGGGAATTCGAAGAACTGATGAATTTCAAGTTAAGGATGTAGTAATTCTGAGCTGCGATTGTGTAATCTCACTTTTCGATGCGTGATTAGTGTAGTCTGGAGCTCAATTATTGCTTGGATTGCTGAATTCAACTCGATTCACTTGTTCAATTGGCTAGGCATGATTGGAACTTAGGGTTTACGATCTAGAATTTCCAATTCGAAACTGTTTCCCTCTGCAAAATCCTCTTCAAATTGCATCTTTTAGTTCTCTAATTTTTCAAACCGGGGGGCAAACTAGGTGCTGGAGTTGGCTGGAAATGCAGCCCGAGACAACAAGAAGAACAGGATAATTCCTCGGCATGTATTGTTGGCCATAAGGAACGATGAGGAGCTTGGGAAATTGCTTGCAGGAGTAACAATTGCGCATGGTGGTGTTCTTCCAAACATAAACCCAGTTCTGTTGCCAAAGAAAAGTGAGAAAGCAGCCACCAAAGAGCCAAAATCTCCATCAAAGGCCCCCAAGGCAACAAAGTCCCCAAAGAAGGCTTAGGTTTTTCTTTTTTCTGGAAAACTTTGATGACTTGTTCTTTGCCCATTTGTATGTACTTTGTTGGCTTTTTAGGATCAACTTCTGTGTTGTTTATCAATGTAAGCTCAAAACTCATGAGTTTGGAGGACTCTGTATCACTCCCATCAATCTTAATGATCAAACTCTGTACTGGTTATGATTGTTTAGCCATCAATT

mRNA sequence

ATAATCCTTCCCGCAAATCCAAATCTTCTCATCGTTATATCCATTTTCCTGTAAATTCCTTCCTCTTCCTTTGATTTTTCCGGCGACCAGCTCAAGTTCCGATGGACACCGGCGGCAAGTTAAAAAAGGGAGCTGGTGGCAGAAAGGGCGGCGGCCCCAAGAAGAAGCCGGTTTCCCGCTCCGTCAAGGCCGGCCTTCAGTTCCCCGTCGGTAGGATTGGTCGATACTTGAAGAATGGCCGGTATGCTCAACGTGTCGGTACCGGAGCTCCGGTCTACTTGGCTGCCGTTCTCGAGTATCTCGCCGCTGAGGTGCTGGAGTTGGCTGGAAATGCAGCCCGAGACAACAAGAAGAACAGGATAATTCCTCGGCATGTATTGTTGGCCATAAGGAACGATGAGGAGCTTGGGAAATTGCTTGCAGGAGTAACAATTGCGCATGGTGGTGTTCTTCCAAACATAAACCCAGTTCTGTTGCCAAAGAAAAGTGAGAAAGCAGCCACCAAAGAGCCAAAATCTCCATCAAAGGCCCCCAAGGCAACAAAGTCCCCAAAGAAGGCTTAGGTTTTTCTTTTTTCTGGAAAACTTTGATGACTTGTTCTTTGCCCATTTGTATGTACTTTGTTGGCTTTTTAGGATCAACTTCTGTGTTGTTTATCAATGTAAGCTCAAAACTCATGAGTTTGGAGGACTCTGTATCACTCCCATCAATCTTAATGATCAAACTCTGTACTGGTTATGATTGTTTAGCCATCAATT

Coding sequence (CDS)

ATGGACACCGGCGGCAAGTTAAAAAAGGGAGCTGGTGGCAGAAAGGGCGGCGGCCCCAAGAAGAAGCCGGTTTCCCGCTCCGTCAAGGCCGGCCTTCAGTTCCCCGTCGGTAGGATTGGTCGATACTTGAAGAATGGCCGGTATGCTCAACGTGTCGGTACCGGAGCTCCGGTCTACTTGGCTGCCGTTCTCGAGTATCTCGCCGCTGAGGTGCTGGAGTTGGCTGGAAATGCAGCCCGAGACAACAAGAAGAACAGGATAATTCCTCGGCATGTATTGTTGGCCATAAGGAACGATGAGGAGCTTGGGAAATTGCTTGCAGGAGTAACAATTGCGCATGGTGGTGTTCTTCCAAACATAAACCCAGTTCTGTTGCCAAAGAAAAGTGAGAAAGCAGCCACCAAAGAGCCAAAATCTCCATCAAAGGCCCCCAAGGCAACAAAGTCCCCAAAGAAGGCTTAG

Protein sequence

MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAATKEPKSPSKAPKATKSPKKA
Homology
[Close]
BLAST of Lcy10g002400 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.9e-68
Identity = 142/156 (91.03%), Postives = 147/156 (94.23%), Query Frame = 0 

Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVYL 60
           MDTG KLKKGAG RKGGGPKKKPVSRSVKAGLQFPVGRIGR+LK GRYAQRVG+GAPVYL
Sbjct: 1   MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEK---AATKEPKSPSKAPKATKSPKKA 154
           NPVLLPKK+EK   AATKEPKSP+   KATKSPKKA
Sbjct: 121 NPVLLPKKAEKAAAAATKEPKSPA---KATKSPKKA 153

[Close]
BLAST of Lcy10g002400 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.9e-64
Identity = 134/155 (86.45%), Postives = 142/155 (91.61%), Query Frame = 0 

Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVYL 60
           MD   K KKGAGGRKGGGP+KK V+RS++AGLQFPVGRIGRYLK GRYAQRVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAAT--KEPKSPSKAPKATKSPKKA 154
           NPVLLPKK+E++ T  KEPKSP   PKA KSPKKA
Sbjct: 121 NPVLLPKKTERSNTVSKEPKSPK--PKAGKSPKKA 153

[Close]
BLAST of Lcy10g002400 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 7.3e-64
Identity = 135/156 (86.54%), Postives = 144/156 (92.31%), Query Frame = 0 

Query: 1   MDTGGKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVY 60
           MD+G K+KKGA GR+ GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAA--TKEPKSPSKAPKATKSPKKA 154
           INP+LLPKKSEKAA  TK PKSPS   KATKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPS---KATKSPKKS 153

[Close]
BLAST of Lcy10g002400 vs. ExPASy Swiss-Prot
Match: A2WQG7 (Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.1e-63
Identity = 137/153 (89.54%), Postives = 140/153 (91.50%), Query Frame = 0 

Query: 4   GGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVYLAAV 63
           GGKLKKGA GRK GGP+KK VSRSVKAGLQFPVGRIGRYLK GRYAQR+GTGAPVYLAAV
Sbjct: 9   GGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAV 68

Query: 64  LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPV 123
           LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPV
Sbjct: 69  LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPV 128

Query: 124 LLPKK-SEKAAT--KEPKSPSKAPKATKSPKKA 154
           LLPKK +EKAA   KE KSP KA  A KSPKKA
Sbjct: 129 LLPKKTAEKAAAAGKEAKSPKKA--AGKSPKKA 159

[Close]
BLAST of Lcy10g002400 vs. ExPASy Swiss-Prot
Match: Q94E96 (Probable histone H2A.5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.1e-63
Identity = 137/153 (89.54%), Postives = 140/153 (91.50%), Query Frame = 0 

Query: 4   GGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVYLAAV 63
           GGKLKKGA GRK GGP+KK VSRSVKAGLQFPVGRIGRYLK GRYAQR+GTGAPVYLAAV
Sbjct: 9   GGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAV 68

Query: 64  LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPV 123
           LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPV
Sbjct: 69  LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPV 128

Query: 124 LLPKK-SEKAAT--KEPKSPSKAPKATKSPKKA 154
           LLPKK +EKAA   KE KSP KA  A KSPKKA
Sbjct: 129 LLPKKTAEKAAAAGKEAKSPKKA--AGKSPKKA 159

[Close]
BLAST of Lcy10g002400 vs. ExPASy TrEMBL
Match: A0A5D3BQ44 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00860 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.3e-73
Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVYL 60
           M+TGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYA+RVGTGAPVYL
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKAPKATKSPKKA 154
           NPVLLPKKSEKA TKEPKSPSKAPKATKSPKKA
Sbjct: 121 NPVLLPKKSEKATTKEPKSPSKAPKATKSPKKA 153

[Close]
BLAST of Lcy10g002400 vs. ExPASy TrEMBL
Match: A0A0A0LV77 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G481210 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.3e-73
Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVYL 60
           M+TGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYA+RVGTGAPVYL
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKAPKATKSPKKA 154
           NPVLLPKKSEKA TKEPKSPSKAPKATKSPKKA
Sbjct: 121 NPVLLPKKSEKATTKEPKSPSKAPKATKSPKKA 153

[Close]
BLAST of Lcy10g002400 vs. ExPASy TrEMBL
Match: A0A1S3C5R1 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103497210 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.3e-73
Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVYL 60
           M+TGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYA+RVGTGAPVYL
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKAPKATKSPKKA 154
           NPVLLPKKSEKA TKEPKSPSKAPKATKSPKKA
Sbjct: 121 NPVLLPKKSEKATTKEPKSPSKAPKATKSPKKA 153

[Close]
BLAST of Lcy10g002400 vs. ExPASy TrEMBL
Match: A0A6J1BYB9 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111006694 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.3e-71
Identity = 148/153 (96.73%), Postives = 150/153 (98.04%), Query Frame = 0 

Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVYL 60
           M+TGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYA+RVGTGAPVYL
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKAPKATKSPKKA 154
           NPVLLPKKSEKA TKEPKSPSK  KATKSPKKA
Sbjct: 121 NPVLLPKKSEKAVTKEPKSPSKVTKATKSPKKA 153

[Close]
BLAST of Lcy10g002400 vs. ExPASy TrEMBL
Match: A0A6J1I2Z0 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111469444 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.8e-71
Identity = 148/153 (96.73%), Postives = 150/153 (98.04%), Query Frame = 0 

Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVYL 60
           MD+  KLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYA+RVGTGAPVYL
Sbjct: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKAPKATKSPKKA 154
           NPVLLPKKSEKAATKEPKSPSKA KATKSPKKA
Sbjct: 121 NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA 153

[Close]
BLAST of Lcy10g002400 vs. NCBI nr
Match: XP_004149043.1 (histone H2A [Cucumis sativus] >XP_008457544.1 PREDICTED: histone H2A [Cucumis melo] >KAA0033912.1 Histone core [Cucumis melo var. makuwa] >KGN65668.1 hypothetical protein Csa_019600 [Cucumis sativus] >TYK01294.1 Histone core [Cucumis melo var. makuwa])

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-72
Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVYL 60
           M+TGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYA+RVGTGAPVYL
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKAPKATKSPKKA 154
           NPVLLPKKSEKA TKEPKSPSKAPKATKSPKKA
Sbjct: 121 NPVLLPKKSEKATTKEPKSPSKAPKATKSPKKA 153

[Close]
BLAST of Lcy10g002400 vs. NCBI nr
Match: XP_022134450.1 (histone H2A-like [Momordica charantia])

HSP 1 Score: 278.9 bits (712), Expect = 2.7e-71
Identity = 148/153 (96.73%), Postives = 150/153 (98.04%), Query Frame = 0 

Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVYL 60
           M+TGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYA+RVGTGAPVYL
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKAPKATKSPKKA 154
           NPVLLPKKSEKA TKEPKSPSK  KATKSPKKA
Sbjct: 121 NPVLLPKKSEKAVTKEPKSPSKVTKATKSPKKA 153

[Close]
BLAST of Lcy10g002400 vs. NCBI nr
Match: XP_022964993.1 (histone H2A [Cucurbita moschata] >XP_022970475.1 histone H2A [Cucurbita maxima] >XP_023520345.1 histone H2A [Cucurbita pepo subsp. pepo] >KAG6583464.1 hypothetical protein SDJN03_19396, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019222.1 hypothetical protein SDJN02_18180 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277.3 bits (708), Expect = 7.8e-71
Identity = 148/153 (96.73%), Postives = 150/153 (98.04%), Query Frame = 0 

Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVYL 60
           MD+  KLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYA+RVGTGAPVYL
Sbjct: 1   MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKAPKATKSPKKA 154
           NPVLLPKKSEKAATKEPKSPSKA KATKSPKKA
Sbjct: 121 NPVLLPKKSEKAATKEPKSPSKASKATKSPKKA 153

[Close]
BLAST of Lcy10g002400 vs. NCBI nr
Match: XP_038895656.1 (histone H2A [Benincasa hispida])

HSP 1 Score: 277.3 bits (708), Expect = 7.8e-71
Identity = 147/153 (96.08%), Postives = 151/153 (98.69%), Query Frame = 0 

Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVYL 60
           M+TGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLK+GRYA+RVGTGAPVY+
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKHGRYARRVGTGAPVYM 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKAPKATKSPKKA 154
           NPVLLPKKSEKAA KEPKSPSKA KATKSPKKA
Sbjct: 121 NPVLLPKKSEKAAAKEPKSPSKASKATKSPKKA 153

[Close]
BLAST of Lcy10g002400 vs. NCBI nr
Match: XP_022997818.1 (histone H2A-like [Cucurbita maxima] >XP_023523186.1 histone H2A-like [Cucurbita pepo subsp. pepo] >KAG6607207.1 hypothetical protein SDJN03_00549, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036893.1 hypothetical protein SDJN02_00513 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.0 bits (702), Expect = 3.9e-70
Identity = 145/153 (94.77%), Postives = 148/153 (96.73%), Query Frame = 0 

Query: 1   MDTGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVYL 60
           MD  GKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYA+RVGTGAPVY+
Sbjct: 1   MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAATKEPKSPSKAPKATKSPKKA 154
           NPVLLPKKSEKAA+KEPKSPSK PK  KSPKKA
Sbjct: 121 NPVLLPKKSEKAASKEPKSPSKTPKGAKSPKKA 153

[Close]
BLAST of Lcy10g002400 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 244.6 bits (623), Expect = 5.2e-65
Identity = 135/156 (86.54%), Postives = 144/156 (92.31%), Query Frame = 0 

Query: 1   MDTGGKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVY 60
           MD+G K+KKGA GR+ GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAA--TKEPKSPSKAPKATKSPKKA 154
           INP+LLPKKSEKAA  TK PKSPS   KATKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPS---KATKSPKKS 153

[Close]
BLAST of Lcy10g002400 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 231.1 bits (588), Expect = 6.0e-61
Identity = 135/180 (75.00%), Postives = 144/180 (80.00%), Query Frame = 0 

Query: 1   MDTGGKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVY 60
           MD+G K+KKGA GR+ GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAVLEYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 IRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAA--TKEPKSPSKAPKATKSPKKA 154
           +RNDEELG LL GVTIAHGGVLPNINP+LLPKKSEKAA  TK PKSPS   KATKSPKK+
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPS---KATKSPKKS 177

[Close]
BLAST of Lcy10g002400 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-53
Identity = 115/148 (77.70%), Postives = 128/148 (86.49%), Query Frame = 0 

Query: 1   MDTGGKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVY 60
           M++ GK+KK  GGRK  G PK K VS+S+KAGLQFPVGRI R+LK GRYAQR+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPN 120
           +AAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLAIRNDEELGKLL+GVTIAHGGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKS--EKAATKEPKSPSKAPK 146
           IN VLLPKKS  + A  K  KSP K+PK
Sbjct: 121 INSVLLPKKSATKPAEEKATKSPVKSPK 148

[Close]
BLAST of Lcy10g002400 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-51
Identity = 114/148 (77.03%), Postives = 125/148 (84.46%), Query Frame = 0 

Query: 6   KLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVYLAAVLE 65
           K  +GAGGRK GG +KK VS+SVKAGLQFPVGRI RYLK GRYA R G+GAPVYLAAVLE
Sbjct: 9   KPTRGAGGRK-GGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLE 68

Query: 66  YLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 125
           YLAAEVLELAGNAARDNKKNRI PRH+ LAIRNDEELG+LL GVTIA GGVLPNINPVLL
Sbjct: 69  YLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLL 128

Query: 126 PKKSEKAATKEPKSPSKAPKATKSPKKA 154
           PKKS  ++++  K+      ATKSPKKA
Sbjct: 129 PKKSTASSSQAEKA-----SATKSPKKA 150

[Close]
BLAST of Lcy10g002400 vs. TAIR 10
Match: AT3G20670.1 (histone H2A 13 )

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-44
Identity = 91/120 (75.83%), Postives = 101/120 (84.17%), Query Frame = 0 

Query: 10  GAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYAQRVGTGAPVYLAAVLEYLAA 69
           G G   G G  KK  SRS KAGLQFPVGRI R+LKNG+YA RVG GAPVYLAAVLEYLAA
Sbjct: 3   GRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 129
           EVLELAGNAARDNKK RI+PRH+ LA+RNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122

The following BLAST results are available for this feature:
BLAST of Lcy10g002400 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M5312.9e-6891.03Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1[more]
Q2HU651.9e-6486.45Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P... [more]
Q9LZ467.3e-6486.54Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1[more]
A2WQG78.1e-6389.54Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3... [more]
Q94E968.1e-6389.54Probable histone H2A.5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0502700 ... [more]
BLAST of Lcy10g002400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BQ445.3e-7398.04Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00860 PE=... [more]
A0A0A0LV775.3e-7398.04Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G481210 PE=3 SV=1[more]
A0A1S3C5R15.3e-7398.04Histone H2A OS=Cucumis melo OX=3656 GN=LOC103497210 PE=3 SV=1[more]
A0A6J1BYB91.3e-7196.73Histone H2A OS=Momordica charantia OX=3673 GN=LOC111006694 PE=3 SV=1[more]
A0A6J1I2Z03.8e-7196.73Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111469444 PE=3 SV=1[more]
BLAST of Lcy10g002400 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004149043.11.1e-7298.04histone H2A [Cucumis sativus] >XP_008457544.1 PREDICTED: histone H2A [Cucumis me... [more]
XP_022134450.12.7e-7196.73histone H2A-like [Momordica charantia][more]
XP_022964993.17.8e-7196.73histone H2A [Cucurbita moschata] >XP_022970475.1 histone H2A [Cucurbita maxima] ... [more]
XP_038895656.17.8e-7196.08histone H2A [Benincasa hispida][more]
XP_022997818.13.9e-7094.77histone H2A-like [Cucurbita maxima] >XP_023523186.1 histone H2A-like [Cucurbita ... [more]
BLAST of Lcy10g002400 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G02560.15.2e-6586.54histone H2A 12 [more]
AT5G02560.26.0e-6175.00histone H2A 12 [more]
AT5G59870.12.1e-5377.70histone H2A 6 [more]
AT5G27670.11.1e-5177.03histone H2A 7 [more]
AT3G20670.11.7e-4475.83histone H2A 13 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 80..94
score: 73.78
coord: 66..79
score: 89.46
coord: 108..126
score: 75.79
coord: 22..44
score: 69.23
coord: 51..66
score: 86.43
IPR002119Histone H2ASMARTSM00414h2a4coord: 11..131
e-value: 3.3E-80
score: 282.5
IPR002119Histone H2ACDDcd00074H2Acoord: 23..128
e-value: 2.75142E-66
score: 195.246
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 20..97
e-value: 3.6E-12
score: 46.8
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 100..133
e-value: 7.9E-19
score: 67.1
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 10..136
e-value: 3.7E-64
score: 216.3
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 13..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..153
NoneNo IPR availablePANTHERPTHR23430:SF304HISTONE H2Acoord: 7..145
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 7..145
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 30..36

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g002400.1Lcy10g002400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031507 heterochromatin assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003723 RNA binding