Lcy10g002280 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g002280
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUlp1-like peptidase
LocationChr10: 3117510 .. 3121194 (-)
RNA-Seq ExpressionLcy10g002280
SyntenyLcy10g002280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCAAGAATGCTCTTGCAGGTCATTGACTCGCTTTTTATGTTCATTCGGAAGAAACTGCAACAACGGTCGGACTTGTGTCGTTGGAAATTTGTCATTGCAGATATTGTTGTTACCGTAAGTATCTCTTCTTTTCACTTCTACATTAACTCAAGTCTTAAGTTACAAGTACTTTGTGTTATGATATATGCTATTTTGTATATATGTCCTTTATCGTAATTGTACATTTCTTAAGTTAGGGTTTTCTTGTATTCCTATATATATGTGTTATTCTCTAATGTGAATGTGAGAGTATTTTTCCCTAATATTGTGTACATGGTATCAGAGAAGGTGTGAGATCAATGGTGCCATAACCAAGAACAGATGATGTTGATCCGTCTGCCAAAGTGACATTCGGAGAAAGTGCAGGTGACAAAGAGGTAGAAAATAAACTAGAATTACCTGTCATATGGGCTGTGGCACCAGAGTCTATGACCCATTTGGTAGAGGATGTAAGAAGACAGTGATTCGAATTACCCGACTCAGCAATAGTTGCAATAGGATTCGAGGAAGATGATACTTGTATTGATTCCTGATACAACTGGAATTTAGCAAACTCGTCTGCAGAAATGGAAACTGACTTCTCAGGTGTATCACTGGTGGAAGCAATCTGAGCATGCTGAGGTCGATATCCATATCCCTTACTTAACAACTTTCGACAATCACGTTTTATATGACCAGGCTTCCGACAATAGTTACATACAATCTCCTGTGAATCCTGTCGTCGATTATCATAACCAGTTCTCTGAGTATTAGTGCTCGTTCCTCTATTAACCTTAGAGTCATTATTTCTACTAATCAAAGCACTGTTAGACTGAGGGACAGACGAACTTATTTGAGGACTTTCAATACGGAGAACTCTACTGAAGACTTCGTCCAAAGTAGGAATTTCAGAACCAGAGAGAATTTGTGCTTTCGCCATCCCAAATTCAGGTTGAAGTCCATTCAAAAATATCATGACAGCCATCTTTTCACGCTGAGCTTGTTGAACCTTTATATCAGAGGTAAATGGGAATAATGTACTAAGCTCTGCACATGTCTTCTTAAGCTGCATGAAGTAATTCGTCACAGATTGTTCTTTCTGAGCGGCATGGAAGAAGGCCATGGAAACATCATACATTCTGTGAACTTGCTCTTTACCTGAGTATAAAAACTCTGTGAACGCTAGTAGTTCTTTCACCGAATCACAATGATTGAACAAACCAACTATCTCGTTTTCTATAGAATTCTTTATTCCCAAATACAACCGAGTATCATTTCTAAGCCAAACCTTCTTCTTTGTGTCATCCTTTGGCGGATCCTCAGTGATATGGTCATCCATCTCAGTGCTTCGTAGATAAAACCGAATTATACGACTCCATTCATGGTATTAGATACTCCTTTTAATCCGTCATTGTTGAGCCCGAGTGAGGGGGAGGATGATGATCTCTTTATCTATGAGATTATCTCTCCATCATCATCCTCTGATCCTTCCCCATCGGTTTATATTCCTCCTCGTCCACCCATTACTCAGGTGTACTCCAGGAGGCCACCACAGGAGCCTTCAGGCACATGTCCTACGCCACAAGATTCTTCGACATCTGATCTTGGACCGAGTGATGATCTTCCCATTGCCCTTCGTAAAGGTAAGCGCACATGTACTTATCCTATTTCTTCGTTTGTGTCTTATAACCAGTTGTCATCACCCACATATTCGTTTATCACATCCCTTGATTCTGTTTCTATCCCTAACTCTGTTCATGAAGCGTTATCTCATTCTGGTTGGTGCAATGCAATGATTGAGGAGATGAATGCTTTAGATACTAATGGTACTTGGGATTTAGTATCTCGTCCTGCAGGCAAGAAGGCCATTGGGTGTAAATGGGTGTTTGCCATAAAAGTCAATCCTGACGGATCCGTTGCTCGTTTGAAAGCACGTCTTGTTGCTAAAGGATATGCTCAAGTTTATGGGATCGATTATTCTGATACATTTTCCCCAGTTGCTAAACTAACGTCTATTCAGTTGTTTCTTTCCATGGCTGCTACTCAAGGTTGGCCCTTACATCAGCTAGACATCAAGAACGCCTTTTTACATGGCGATCTTCAGGAGGAAGTTTATATTGAGCAACCACCTGGATTTGTTGCTTAGGGGGAAAGTGATAAAGTTTGTCGCCTTAGAAAATCATTGTATGGATTGAAACAGAGTCCACGTGCATGGTTTGGTAAGTTTAGTCAGACACTTGAGCAATTTGGAATGAAGAAGAGTACGTCTGATCATTCTGTTTTCTACCGACGATCTGAGAATGGGATTACTTTGCTTGTTGTGTATGTTGATGATATTGTTATCACTGGTAATGATACATCAGGTATAACCTCTCTCAAAACTTTCCTTCAGGGTCAATTTCATACTAAGGATCTGGGAACGCTAAAGTATTTTCTGGGTATTGAAGTGATGAGAAGCAAGAAAGGTATCTTTTTGTCACAACGAAAATATGTACTTGATTTGTTATCTGAGACAGGAAAACTAGGAGTTAAACTATGTAGTACTCCGATGATACCAAATTTGCAACTCACCAAAGAAGGAGAATTATTTAAAGACCCAGAAAGATACAGAAGATTAGTTGGGAAGTTGAATTATCTAACAGTGACACGACCAGACATTGCTTATTCAGTGAGTATTGTAAGTCAATATATGTCATCACCTACAGTAGATCATTGGGCTGCAGTAGAACAAATTCTGTGTTACTTGAAAGCTGTCCCAGGGCGTGGAATCTTATATAAAGATCATGGTCATACAAAAGTTGAATGCTTTTCCGATGCTGATTGGGTTGGATCTAAAGAAGATAGAAGATCAACTTTTGGATATTGTGTCTTTGTAGGAGGCAATTTGGTTTCATGGAAGAGTAAGAAGCAGAATGTGGTTTCACGTTCGAGTGCTGAATCAGAATATAGAGCTATGGCACAATCTGTATGTGAGATAGTATGGATACATCAACTGTTGACGGAGATAGGGTTCAATGTTACTATGCCAGCTAAATTGTGGTGTGATAATCAAGCTGCACTTCACATTGCATCTAATCCAGTGTTTCATGAGAGGACTAAACATATTGAGGTGGATTGTCACTTCATTCGTGAGAAAATACAACAAGGGTTGGTGTCCACAGGATATGTGAAGACAGGAGAACAATTGGGAGATATTCTTACCAAAGCATTAAATGGAGCAAGAATTACTTATCTCTGCAACAAGTTGGGCATGATTGACATATTTGCTCCAACTTGAGGGGGAGTGTTATGATATATGCTATTTTGTATATATGTCATTTATCGTAATTGTACATTTCTTAAGTTAGGGTTTTCTTGTATTCCTATATATATGTGTTATTCTCTAATGTGAATGTGAGAGTATTTTTCCCTAATATTGTGTACACGTTGTAATTTTCTTCCACAGGAGTTTTTGAGACGTCACGACGATATATCTGAAGAGTTCAAGAAGGTGCAAGATCCTTCATTGATTACGTTCGACTGGAGTACAACCAAGACTTTGATGGACTACGTTATGGGTCGACACTCGGACCATGATGCACATTGGAGTACAGTTGACGCGATCTACAACCATTCAACCTCGGAGGGAAACCATTGGGTTATGGTATGTGTTGATCTCTAG

mRNA sequence

ATGTCATCAAGAATGCTCTTGCAGGTCATTGACTCGCTTTTTATGTTCATTCGGAAGAAACTGCAACAACGGTCGGACTTGTGTCGTTGGAAATTTGTCATTGCAGATATTGTTGTTACCGAGTTTTTGAGACGTCACGACGATATATCTGAAGAGTTCAAGAAGGTGCAAGATCCTTCATTGATTACGTTCGACTGGAGTACAACCAAGACTTTGATGGACTACGTTATGGGTCGACACTCGGACCATGATGCACATTGGAGTACAGTTGACGCGATCTACAACCATTCAACCTCGGAGGGAAACCATTGGGTTATGGTATGTGTTGATCTCTAG

Coding sequence (CDS)

ATGTCATCAAGAATGCTCTTGCAGGTCATTGACTCGCTTTTTATGTTCATTCGGAAGAAACTGCAACAACGGTCGGACTTGTGTCGTTGGAAATTTGTCATTGCAGATATTGTTGTTACCGAGTTTTTGAGACGTCACGACGATATATCTGAAGAGTTCAAGAAGGTGCAAGATCCTTCATTGATTACGTTCGACTGGAGTACAACCAAGACTTTGATGGACTACGTTATGGGTCGACACTCGGACCATGATGCACATTGGAGTACAGTTGACGCGATCTACAACCATTCAACCTCGGAGGGAAACCATTGGGTTATGGTATGTGTTGATCTCTAG

Protein sequence

MSSRMLLQVIDSLFMFIRKKLQQRSDLCRWKFVIADIVVTEFLRRHDDISEEFKKVQDPSLITFDWSTTKTLMDYVMGRHSDHDAHWSTVDAIYNHSTSEGNHWVMVCVDL
Homology
[Close]
BLAST of Lcy10g002280 vs. ExPASy TrEMBL
Match: A0A6J1D3R7 (uncharacterized protein LOC111016993 OS=Momordica charantia OX=3673 GN=LOC111016993 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-15
Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 0 

Query: 8   QVIDSLFMFIRKKLQQRSDLCRWKFVIADIVVTEFLRRHDDI---SEEFKKVQDPSLITF 67
           +V+D LFM +RKKL+QR DLC  KF   D+V+  + RR DD+    +    +       +
Sbjct: 136 EVVDELFMLLRKKLEQRPDLCSRKFTTGDLVLANYFRRKDDLYACMQSDSSLPSKVAAEY 195

Query: 68  DW-STTKTLMDYVMGRHSDHDAHWSTVDAIYNHSTSEGNHWVMVCVDL 112
           DW    +++M Y  G H+D+   W  VDAIY      G HWVMVC+DL
Sbjct: 196 DWDGRDESIMGYTDGTHTDYPLRWMEVDAIYIPFNIRGKHWVMVCIDL 243

[Close]
BLAST of Lcy10g002280 vs. ExPASy TrEMBL
Match: A0A6J1DY60 (uncharacterized protein LOC111025273 OS=Momordica charantia OX=3673 GN=LOC111025273 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.2e-14
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 0 

Query: 8   QVIDSLFMFIRKKLQQRSDLCRWKFVIADIVVTEFLRRHDDISEEFKKVQDPSLITFDWS 67
           + IDSL M   +K+++   L R +F I D++++  LRR D      K    PS  T+DW 
Sbjct: 36  EYIDSLMMLTARKVEKCKHLLRVQFAIGDVLLSNLLRRTDGPYAAMKPGVLPSKCTYDWR 95

Query: 68  TTKTLMDYVMGRHSDHDAHWSTVDAIYNHSTSEGNHWVMVCVDL 112
             +T+  YV+GR SD+D  WS  D +Y      GNHWVM+ +DL
Sbjct: 96  QERTIFRYVLGRQSDYDTLWSEADIVYTRMNIGGNHWVMIGIDL 139

[Close]
BLAST of Lcy10g002280 vs. ExPASy TrEMBL
Match: A0A6J1BWN0 (uncharacterized protein LOC111005406 OS=Momordica charantia OX=3673 GN=LOC111005406 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 39/101 (38.61%), Postives = 52/101 (51.49%), Query Frame = 0 

Query: 15  MFIRKKLQQRSDLCRWKFVIADIVVTEFLRRHDDI---SEEFKKVQDPSLITFDW-STTK 74
           M +RKKL+QR DLC  KF   D+V+  + RR D +    +    +       +DW    K
Sbjct: 1   MLVRKKLEQRPDLCSRKFTTGDLVLANYFRRKDGLYACMQSDSSLPSKVAAEYDWDGRDK 60

Query: 75  TLMDYVMGRHSDHDAHWSTVDAIYNHSTSEGNHWVMVCVDL 112
           ++M Y  G H D+   W  VD IY      G HWVMVC+DL
Sbjct: 61  SIMGYTDGTHMDYPLRWMEVDVIYLPFNIRGKHWVMVCIDL 101

[Close]
BLAST of Lcy10g002280 vs. ExPASy TrEMBL
Match: A0A6J1DLV0 (uncharacterized protein LOC111021646 OS=Momordica charantia OX=3673 GN=LOC111021646 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = 0 

Query: 15  MFIRKKLQQRSDLCRWKFVIADIVVTEFLRRHDDISEEFKKVQDPSLIT------FDW-S 74
           MF+  KL+ R +LCR KF   D++++ FLR  D +   +  +Q P++I       +DW  
Sbjct: 1   MFVCNKLKLRPNLCRRKFTTGDVLISNFLRSTDGV---YVMMQSPNVIASRVASDYDWEG 60

Query: 75  TTKTLMDYVMGRHSDHDAHWSTVDAIYNHSTSEGNHWVMVCVD 111
              +++ Y+ G HSD+D  W  VDA+Y      G HW+++C+D
Sbjct: 61  RAWSMLSYIDGTHSDNDTRWMDVDAVYLPYNIGGVHWIVICID 100

[Close]
BLAST of Lcy10g002280 vs. ExPASy TrEMBL
Match: A0A5A7SWJ7 (Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00260 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-08
Identity = 35/102 (34.31%), Postives = 53/102 (51.96%), Query Frame = 0 

Query: 10  IDSLFMFIRKKLQQRSDLCRWKFVIADIVVTEFLRRHDDISEEFKKVQDPSLITFDWSTT 69
           +D+LF+FIR K++         F+ AD +    L     + +E  K   P    FDW   
Sbjct: 285 LDALFLFIRLKIKAAGIPSSQNFITADTIFMRILVSKWPLYKECIKENRP----FDWDEE 344

Query: 70  KTLMDYVMGRHSDHDAHWSTVDAIYNHSTSEGNHWVMVCVDL 112
             L+DYV+G   D    W++VD +Y+     GNHWV++C+DL
Sbjct: 345 YRLVDYVVGSKEDFQDPWASVDYVYSPFNVHGNHWVLLCLDL 382

[Close]
BLAST of Lcy10g002280 vs. NCBI nr
Match: XP_022148308.1 (uncharacterized protein LOC111016993 [Momordica charantia])

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-15
Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 0 

Query: 8   QVIDSLFMFIRKKLQQRSDLCRWKFVIADIVVTEFLRRHDDI---SEEFKKVQDPSLITF 67
           +V+D LFM +RKKL+QR DLC  KF   D+V+  + RR DD+    +    +       +
Sbjct: 136 EVVDELFMLLRKKLEQRPDLCSRKFTTGDLVLANYFRRKDDJYACMQSDSSLPSKVAAEY 195

Query: 68  DW-STTKTLMDYVMGRHSDHDAHWSTVDAIYNHSTSEGNHWVMVCVDL 112
           DW    +++M Y  G H+D+   W  VDAIY      G HWVMVC+DL
Sbjct: 196 DWDGRDESIMGYTDGTHTDYPLRWMEVDAIYIPFNIRGKHWVMVCIDL 243

[Close]
BLAST of Lcy10g002280 vs. NCBI nr
Match: XP_022158807.1 (uncharacterized protein LOC111025273 [Momordica charantia])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 0 

Query: 8   QVIDSLFMFIRKKLQQRSDLCRWKFVIADIVVTEFLRRHDDISEEFKKVQDPSLITFDWS 67
           + IDSL M   +K+++   L R +F I D++++  LRR D      K    PS  T+DW 
Sbjct: 36  EYIDSLMMLTARKVEKCKHLLRVQFAIGDVLLSNLLRRTDGPYAAMKPGVLPSKCTYDWR 95

Query: 68  TTKTLMDYVMGRHSDHDAHWSTVDAIYNHSTSEGNHWVMVCVDL 112
             +T+  YV+GR SD+D  WS  D +Y      GNHWVM+ +DL
Sbjct: 96  QERTIFRYVLGRQSDYDTLWSEADIVYTRMNIGGNHWVMIGIDL 139

[Close]
BLAST of Lcy10g002280 vs. NCBI nr
Match: XP_022132578.1 (uncharacterized protein LOC111005406 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-11
Identity = 39/101 (38.61%), Postives = 52/101 (51.49%), Query Frame = 0 

Query: 15  MFIRKKLQQRSDLCRWKFVIADIVVTEFLRRHDDI---SEEFKKVQDPSLITFDW-STTK 74
           M +RKKL+QR DLC  KF   D+V+  + RR D +    +    +       +DW    K
Sbjct: 1   MLVRKKLEQRPDLCSRKFTTGDLVLANYFRRKDGLYACMQSDSSLPSKVAAEYDWDGRDK 60

Query: 75  TLMDYVMGRHSDHDAHWSTVDAIYNHSTSEGNHWVMVCVDL 112
           ++M Y  G H D+   W  VD IY      G HWVMVC+DL
Sbjct: 61  SIMGYTDGTHMDYPLRWMEVDVIYLPFNIRGKHWVMVCIDL 101

[Close]
BLAST of Lcy10g002280 vs. NCBI nr
Match: XP_022154364.1 (uncharacterized protein LOC111021646 [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-10
Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = 0 

Query: 15  MFIRKKLQQRSDLCRWKFVIADIVVTEFLRRHDDISEEFKKVQDPSLIT------FDW-S 74
           MF+  KL+ R +LCR KF   D++++ FLR  D +   +  +Q P++I       +DW  
Sbjct: 1   MFVCNKLKLRPNLCRRKFTTGDVLISNFLRSTDGV---YVMMQSPNVIASRVASDYDWEG 60

Query: 75  TTKTLMDYVMGRHSDHDAHWSTVDAIYNHSTSEGNHWVMVCVD 111
              +++ Y+ G HSD+D  W  VDA+Y      G HW+++C+D
Sbjct: 61  RAWSMLSYIDGTHSDNDTRWMDVDAVYLPYNIGGVHWIVICID 100

[Close]
BLAST of Lcy10g002280 vs. NCBI nr
Match: KAA0035410.1 (Ulp1-like peptidase [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 6.8e-08
Identity = 35/102 (34.31%), Postives = 53/102 (51.96%), Query Frame = 0 

Query: 10  IDSLFMFIRKKLQQRSDLCRWKFVIADIVVTEFLRRHDDISEEFKKVQDPSLITFDWSTT 69
           +D+LF+FIR K++         F+ AD +    L     + +E  K   P    FDW   
Sbjct: 285 LDALFLFIRLKIKAAGIPSSQNFITADTIFMRILVSKWPLYKECIKENRP----FDWDEE 344

Query: 70  KTLMDYVMGRHSDHDAHWSTVDAIYNHSTSEGNHWVMVCVDL 112
             L+DYV+G   D    W++VD +Y+     GNHWV++C+DL
Sbjct: 345 YRLVDYVVGSKEDFQDPWASVDYVYSPFNVHGNHWVLLCLDL 382

The following BLAST results are available for this feature:
BLAST of Lcy10g002280 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy10g002280 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D3R72.1e-1540.74uncharacterized protein LOC111016993 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A6J1DY605.2e-1439.42uncharacterized protein LOC111025273 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1BWN01.1e-1138.61uncharacterized protein LOC111005406 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6J1DLV01.2e-1034.95uncharacterized protein LOC111021646 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A5A7SWJ73.3e-0834.31Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G... [more]
BLAST of Lcy10g002280 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022148308.13.4e-1540.74uncharacterized protein LOC111016993 [Momordica charantia][more]
XP_022158807.11.1e-1339.42uncharacterized protein LOC111025273 [Momordica charantia][more]
XP_022132578.12.3e-1138.61uncharacterized protein LOC111005406 [Momordica charantia][more]
XP_022154364.12.5e-1034.95uncharacterized protein LOC111021646 [Momordica charantia][more]
KAA0035410.16.8e-0834.31Ulp1-like peptidase [Cucumis melo var. makuwa][more]
BLAST of Lcy10g002280 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g002280.1Lcy10g002280.1mRNA