Lcy10g002220 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g002220
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Zinc finger, C3HC4 type family protein
Location	Chr10: 2970729 .. 2972357 (+)
RNA-Seq Expression	Lcy10g002220
Synteny	Lcy10g002220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCGAAGTTGGTTCATTTTCGTCATTTTCCTCAGTCCTATCGTGGCCGCCTCGCTCGATAATCTTCCCAAAAAAAAATACCCTGCATCTGACGAAAGTTAAGTCGCGAAGCTTATGTCACCATGATTTCCATTCTCGCTCAGGTAACCAAGCATCCATACTCGGATGAACTTTCACAGCTGATTCCATTCCCTTTCCCCTTTTCCGGCGCTGTTTGATCTCATTTTCCTTTCCTTTTTGGTGGAATTTTGGATTTAATTGCAGGAGCGACTGCTTGGTGCTGCATTGGGAAGCGTATTCGCCGGGGTTGTTGTTTTTGAGCAGCGGAAAAGCTTATACAGGTCCATTTCGGAAAACTATCCACCAGCCACCCAATCTCCGGTATGCTTAAATTTCCCTTTCTGTAACCCTAATGCTCAACTTTTTATTGTTTGTGTTTGACCGCTGTTTCGAGATGATTAGGATGTCCGGAATTGTGGAAATGTAGATGTTTGGGAATAAGGGGAGAATGTAATGAAATTATCAATTTTTTCAATAATTCCATTCAGGTGAAGTTATTTGTTAGGAGTTTTATATATATTTGACATTAGTATTAATCTAAATATGGCTTCATCTATATAGTTTTTATGCTTTACTTTATTATCAATTAATTTATGTTAAATCTTTAATTTTTTCCCTAGAAAATTGAGGAATACTTATTTGGAGTATTGTATAATCAAATATTAGCCTTAGTCTAAATCTACATAGGATTTTAATTCATCAAAGAAAAATATGAAGTTTTGTATAAAAATATGGTCATTACTTCATTAGTGAAAGTTAAAATTGTAAAAGACCATTTAAGGACACCATTGGTATCAAGAAAATCCGTTATTGCTGTCATTTTGGATGCCTAGGTGTACAGCATTTTGATTGAAGAAACCTGAGTGTCTACTCCTTGAACATATGTGATAAATGGGTTCTTAACAATTTTTGAGAAAACGTTGATTCAAAGGCAGAAGTATCTCAGAATAAGGAACTTAATATTCAATATTCGTCCATAGGACAAGGATAAGATATATGGTACCTGGATTTTGTCCATCTGGCCTCTAGGAATGGTGATTAATGTGGACAGCCAGGATATATGTTATTTCTAAGGAATTATTGAGATTATATTTCATCTAAACTTTGCTCTTGGCCCACAAGTTGTCGTACCTACAATATAGAATTGTTTAATGCAAGTTATATCGTCTCTGAATTTATACTTCCATCTAGCAGCTAATCCATTAATCTAATAGCATCCTCTTTGAACCTACTTTAGATGAGAAAACCTGTACTAGCAAAGAAATATGGCCCAGAGGTTTTGCACCTGTGGAATAGAGCTGTGGACCAGACATTTGGACCCGTGATTCAGGCTCTCAGTTCTCGGGGATGGTGATATGTTGAGAATGATTTCTTCATCAATGTATTTAAACATCAATTCATGAAACATGTAAGGAAACAAAATTTTAAATTTTGTACTTTTTACATTCTGGATTACTAAGGAATTGATGTCATGACTGTGGAACAAAGCCATGAGTATAAAGGCCCTTGAAACAATAAAACCTTTGTTTTCCTATAGTCTGTACTTTCTTTTCTCCCATATATTTCAAT

mRNA sequence

ATTCGAAGTTGGTTCATTTTCGTCATTTTCCTCAGTCCTATCGTGGCCGCCTCGCTCGATAATCTTCCCAAAAAAAAATACCCTGCATCTGACGAAAGTTAAGTCGCGAAGCTTATGTCACCATGATTTCCATTCTCGCTCAGGAGCGACTGCTTGGTGCTGCATTGGGAAGCGTATTCGCCGGGGTTGTTGTTTTTGAGCAGCGGAAAAGCTTATACAGGTCCATTTCGGAAAACTATCCACCAGCCACCCAATCTCCGATGAGAAAACCTGTACTAGCAAAGAAATATGGCCCAGAGGTTTTGCACCTGTGGAATAGAGCTGTGGACCAGACATTTGGACCCGTGATTCAGGCTCTCAGTTCTCGGGGATGGTGATATGTTGAGAATGATTTCTTCATCAATGTATTTAAACATCAATTCATGAAACATGTAAGGAAACAAAATTTTAAATTTTGTACTTTTTACATTCTGGATTACTAAGGAATTGATGTCATGACTGTGGAACAAAGCCATGAGTATAAAGGCCCTTGAAACAATAAAACCTTTGTTTTCCTATAGTCTGTACTTTCTTTTCTCCCATATATTTCAAT

Coding sequence (CDS)

ATGATTTCCATTCTCGCTCAGGAGCGACTGCTTGGTGCTGCATTGGGAAGCGTATTCGCCGGGGTTGTTGTTTTTGAGCAGCGGAAAAGCTTATACAGGTCCATTTCGGAAAACTATCCACCAGCCACCCAATCTCCGATGAGAAAACCTGTACTAGCAAAGAAATATGGCCCAGAGGTTTTGCACCTGTGGAATAGAGCTGTGGACCAGACATTTGGACCCGTGATTCAGGCTCTCAGTTCTCGGGGATGGTGA

Protein sequence

MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEVLHLWNRAVDQTFGPVIQALSSRGW

Homology

[Close]

BLAST of Lcy10g002220 vs. ExPASy TrEMBL
Match: A0A6J1DSC3 (uncharacterized protein LOC111023455 OS=Momordica charantia OX=3673 GN=LOC111023455 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.7e-37
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEV 60
          MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPA QSPMRKPV+AKKYGPEV
Sbjct: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEV 60

Query: 61 LHLWNRAVDQTFGPVIQALSSRGW 85
           HLWNRAVDQTFGP+IQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPMIQALSSRGW 84

[Close]

BLAST of Lcy10g002220 vs. ExPASy TrEMBL
Match: A0A0A0LXB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495270 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1   MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEV 60
           MIS+LAQERLLG ALGSVFAGVVVFEQRKSLY+SISENYPPATQSPMRKPVLAKKYGPE 
Sbjct: 54  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEF 113

Query: 61  LHLWNRAVDQTFGPVIQALSSRGW 85
            HLWNRAVDQTFGPVIQALSSRGW
Sbjct: 114 SHLWNRAVDQTFGPVIQALSSRGW 137

[Close]

BLAST of Lcy10g002220 vs. ExPASy TrEMBL
Match: A0A5D3BR76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00590 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 77/84 (91.67%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEV 60
          MIS+LAQERLLG ALGS FAGVVVFEQRKSLY+SISENYPPATQSPMRKPVLAKKYGPE 
Sbjct: 1  MISVLAQERLLGFALGSAFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEF 60

Query: 61 LHLWNRAVDQTFGPVIQALSSRGW 85
           HLWNRAVDQTFGP+IQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPMIQALSSRGW 84

[Close]

BLAST of Lcy10g002220 vs. ExPASy TrEMBL
Match: A0A1S3C5P6 (uncharacterized protein LOC103497197 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497197 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 77/84 (91.67%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEV 60
          MIS+LAQERLLG ALGS FAGVVVFEQRKSLY+SISENYPPATQSPMRKPVLAKKYGPE 
Sbjct: 1  MISVLAQERLLGFALGSAFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEF 60

Query: 61 LHLWNRAVDQTFGPVIQALSSRGW 85
           HLWNRAVDQTFGP+IQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPMIQALSSRGW 84

[Close]

BLAST of Lcy10g002220 vs. ExPASy TrEMBL
Match: A0A6J1HZ79 (uncharacterized protein LOC111469446 OS=Cucurbita maxima OX=3661 GN=LOC111469446 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.1e-35
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEV 60
          MISILAQERLLGAALGSVFAGVVVFEQRKSLY SIS+NYPP TQSPMRKPVLAKKYGPE 
Sbjct: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYDSISKNYPPTTQSPMRKPVLAKKYGPEF 60

Query: 61 LHLWNRAVDQTFGPVIQALSSRGW 85
           HLWN AVDQTFGPVIQALSSRGW
Sbjct: 61 SHLWNSAVDQTFGPVIQALSSRGW 84

[Close]

BLAST of Lcy10g002220 vs. NCBI nr
Match: XP_022156577.1 (uncharacterized protein LOC111023455 [Momordica charantia])

HSP 1 Score: 162.9 bits (411), Expect = 1.2e-36
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEV 60
          MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPA QSPMRKPV+AKKYGPEV
Sbjct: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEV 60

Query: 61 LHLWNRAVDQTFGPVIQALSSRGW 85
           HLWNRAVDQTFGP+IQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPMIQALSSRGW 84

[Close]

BLAST of Lcy10g002220 vs. NCBI nr
Match: XP_004152895.1 (uncharacterized protein LOC101206005 isoform X2 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 4.5e-36
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEV 60
          MIS+LAQERLLG ALGSVFAGVVVFEQRKSLY+SISENYPPATQSPMRKPVLAKKYGPE 
Sbjct: 1  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEF 60

Query: 61 LHLWNRAVDQTFGPVIQALSSRGW 85
           HLWNRAVDQTFGPVIQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPVIQALSSRGW 84

[Close]

BLAST of Lcy10g002220 vs. NCBI nr
Match: KAG6607218.1 (hypothetical protein SDJN03_00560, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160.2 bits (404), Expect = 7.6e-36
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEV 60
          MISILAQERLLGAALGSVF GVVVFEQRKS+YRSISENYPPATQSPM+K VLAKKYGPE+
Sbjct: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEI 60

Query: 61 LHLWNRAVDQTFGPVIQALSSRGW 85
           HLWNRAVDQTFGPVIQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPVIQALSSRGW 84

[Close]

BLAST of Lcy10g002220 vs. NCBI nr
Match: XP_008457526.1 (PREDICTED: uncharacterized protein LOC103497197 isoform X2 [Cucumis melo] >KAA0033888.1 uncharacterized protein E6C27_scaffold43059G00730 [Cucumis melo var. makuwa] >TYK01272.1 uncharacterized protein E5676_scaffold49G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 2.9e-35
Identity = 77/84 (91.67%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEV 60
          MIS+LAQERLLG ALGS FAGVVVFEQRKSLY+SISENYPPATQSPMRKPVLAKKYGPE 
Sbjct: 1  MISVLAQERLLGFALGSAFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEF 60

Query: 61 LHLWNRAVDQTFGPVIQALSSRGW 85
           HLWNRAVDQTFGP+IQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPMIQALSSRGW 84

[Close]

BLAST of Lcy10g002220 vs. NCBI nr
Match: XP_023519919.1 (uncharacterized protein LOC111783242 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 3.8e-35
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEV 60
          MISILAQERLLGAALGSVFAGVVVFEQRKSLY SIS+NYPP TQSPMRKPVLAKKYGPE 
Sbjct: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYESISKNYPPTTQSPMRKPVLAKKYGPEF 60

Query: 61 LHLWNRAVDQTFGPVIQALSSRGW 85
           HLWN AVDQTFGPVIQALSSRGW
Sbjct: 61 SHLWNSAVDQTFGPVIQALSSRGW 84

[Close]

BLAST of Lcy10g002220 vs. TAIR 10
Match: AT2G28430.1 (unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.3 bits (207), Expect = 5.0e-17
Identity = 45/85 (52.94%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISE-NYPPATQSPMRKPVLAKKYGPE 60
          MISILAQERLLG  LGS   G +VFEQRK ++ S+S+       Q+ +   +  KKY  E
Sbjct: 1  MISILAQERLLGYTLGSALTGFIVFEQRKLIHDSVSDPKSQSIDQAQVSDRIFGKKYRME 60

Query: 61 VLHLWNRAVDQTFGPVIQALSSRGW 85
             LWN+AVDQTF P I+ LSSR W
Sbjct: 61 FASLWNKAVDQTFEPAIEYLSSRKW 85

The following BLAST results are available for this feature:

BLAST of Lcy10g002220 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g002220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSC3	5.7e-37	95.24	uncharacterized protein LOC111023455 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A0A0LXB2	2.2e-36	94.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495270 PE=4 SV=1	[more]
A0A5D3BR76	1.4e-35	91.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C5P6	1.4e-35	91.67	uncharacterized protein LOC103497197 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1HZ79	3.1e-35	92.86	uncharacterized protein LOC111469446 OS=Cucurbita maxima OX=3661 GN=LOC111469446...	[more]

BLAST of Lcy10g002220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156577.1	1.2e-36	95.24	uncharacterized protein LOC111023455 [Momordica charantia]	[more]
XP_004152895.1	4.5e-36	94.05	uncharacterized protein LOC101206005 isoform X2 [Cucumis sativus]	[more]
KAG6607218.1	7.6e-36	92.86	hypothetical protein SDJN03_00560, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008457526.1	2.9e-35	91.67	PREDICTED: uncharacterized protein LOC103497197 isoform X2 [Cucumis melo] >KAA00...	[more]
XP_023519919.1	3.8e-35	92.86	uncharacterized protein LOC111783242 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy10g002220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28430.1	5.0e-17	52.94	unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37720	OS10G0481400 PROTEIN	coord: 1..84
None	No IPR available	PANTHER	PTHR37720:SF2	OS10G0481400 PROTEIN	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g002220.1	Lcy10g002220.1	mRNA