Lcy10g002030 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g002030
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	FRIGIDA-like protein
Location	Chr10: 2592891 .. 2593106 (-)
RNA-Seq Expression	Lcy10g002030
Synteny	Lcy10g002030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCAGACGTCTCTAATGACTAGCTGTACGCTGCTCTGGAAGGAGCTCTCGGACCACTTCACTAATCTTGAGCAAGATCTTTTGAAGAAATCGGAGGCATTGAGGCATAAAATCGAAACCCTAGACCATCAGACTAAGGAGTCTCTTGATGAGCTGGAGAAGCGTGAGGAGCTTGAGATAAGGGCAAATTTCTTTCATCCATGGATTCCTTAA

mRNA sequence

ATGTTTCAGACGTCTCTAATGACTAGCTGTACGCTGCTCTGGAAGGAGCTCTCGGACCACTTCACTAATCTTGAGCAAGATCTTTTGAAGAAATCGGAGGCATTGAGGCATAAAATCGAAACCCTAGACCATCAGACTAAGGAGTCTCTTGATGAGCTGGAGAAGCGTGAGGAGCTTGAGATAAGGGCAAATTTCTTTCATCCATGGATTCCTTAA

Coding sequence (CDS)

ATGTTTCAGACGTCTCTAATGACTAGCTGTACGCTGCTCTGGAAGGAGCTCTCGGACCACTTCACTAATCTTGAGCAAGATCTTTTGAAGAAATCGGAGGCATTGAGGCATAAAATCGAAACCCTAGACCATCAGACTAAGGAGTCTCTTGATGAGCTGGAGAAGCGTGAGGAGCTTGAGATAAGGGCAAATTTCTTTCATCCATGGATTCCTTAA

Protein sequence

MFQTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIETLDHQTKESLDELEKREELEIRANFFHPWIP

Homology

[Close]

BLAST of Lcy10g002030 vs. ExPASy Swiss-Prot
Match: Q9LUV4 (FRIGIDA-like protein 4a OS=Arabidopsis thaliana OX=3702 GN=FRL4A PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-15
Identity = 41/55 (74.55%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 3  QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIETLDHQTKESLDELEKRE 58
          QTSLMTSCTLLW+ELSDHFT+LEQ+L+KKSEAL+  IETLD+QT+ SL+ L++RE
Sbjct: 24 QTSLMTSCTLLWQELSDHFTSLEQNLMKKSEALKQMIETLDNQTQTSLESLKRRE 78

[Close]

BLAST of Lcy10g002030 vs. ExPASy Swiss-Prot
Match: Q940H8 (FRIGIDA-like protein 4b OS=Arabidopsis thaliana OX=3702 GN=FRL4B PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.2e-14
Identity = 38/55 (69.09%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 3  QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIETLDHQTKESLDELEKRE 58
          Q SLMTSC LLWKELS+HFT++EQ+L+KKSEALR  IETLD+QT+ S++ L+ RE
Sbjct: 24 QASLMTSCNLLWKELSEHFTSMEQNLMKKSEALRQMIETLDNQTQSSIELLKHRE 78

[Close]

BLAST of Lcy10g002030 vs. ExPASy TrEMBL
Match: A0A5A7TFJ5 (FRIGIDA-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00190 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 3  QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIETLDHQTKESLDELEKRE 58
          QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKI+TLDHQTKESLDELEKRE
Sbjct: 24 QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIQTLDHQTKESLDELEKRE 78

[Close]

BLAST of Lcy10g002030 vs. ExPASy TrEMBL
Match: A0A0A0K5L7 (FRIGIDA-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G234160 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 3  QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIETLDHQTKESLDELEKRE 58
          QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKI+TLDHQTKESLDELEKRE
Sbjct: 24 QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIQTLDHQTKESLDELEKRE 78

[Close]

BLAST of Lcy10g002030 vs. ExPASy TrEMBL
Match: A0A6J1C9V1 (FRIGIDA-like protein OS=Momordica charantia OX=3673 GN=LOC111009707 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 3  QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIETLDHQTKESLDELEKRE 58
          QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKI+TLDHQTKESLDELEKRE
Sbjct: 24 QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIQTLDHQTKESLDELEKRE 78

[Close]

BLAST of Lcy10g002030 vs. ExPASy TrEMBL
Match: A0A1S4DWL0 (FRIGIDA-like protein OS=Cucumis melo OX=3656 GN=LOC103489669 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 3  QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIETLDHQTKESLDELEKRE 58
          QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKI+TLDHQTKESLDELEKRE
Sbjct: 24 QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIQTLDHQTKESLDELEKRE 78

[Close]

BLAST of Lcy10g002030 vs. ExPASy TrEMBL
Match: A0A6J1KIJ5 (FRIGIDA-like protein OS=Cucurbita maxima OX=3661 GN=LOC111494276 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-19
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 3  QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIETLDHQTKESLDELEKRE 58
          QTSLM SCTLLWKELSDHFTNLEQDLLKKSEALRHKI+TLDHQTKESLDEL+KRE
Sbjct: 21 QTSLMASCTLLWKELSDHFTNLEQDLLKKSEALRHKIQTLDHQTKESLDELDKRE 75

[Close]

BLAST of Lcy10g002030 vs. NCBI nr
Match: XP_022138585.1 (FRIGIDA-like protein 4a [Momordica charantia])

HSP 1 Score: 107.8 bits (268), Expect = 3.8e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 3  QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIETLDHQTKESLDELEKRE 58
          QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKI+TLDHQTKESLDELEKRE
Sbjct: 24 QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIQTLDHQTKESLDELEKRE 78

[Close]

BLAST of Lcy10g002030 vs. NCBI nr
Match: KAA0040796.1 (FRIGIDA-like protein 4a [Cucumis melo var. makuwa] >TYK17777.1 FRIGIDA-like protein 4a [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 3.8e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 3  QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIETLDHQTKESLDELEKRE 58
          QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKI+TLDHQTKESLDELEKRE
Sbjct: 24 QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIQTLDHQTKESLDELEKRE 78

[Close]

BLAST of Lcy10g002030 vs. NCBI nr
Match: XP_038874267.1 (FRIGIDA-like protein 4a [Benincasa hispida])

HSP 1 Score: 107.8 bits (268), Expect = 3.8e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 3  QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIETLDHQTKESLDELEKRE 58
          QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKI+TLDHQTKESLDELEKRE
Sbjct: 24 QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIQTLDHQTKESLDELEKRE 78

[Close]

BLAST of Lcy10g002030 vs. NCBI nr
Match: XP_016900353.1 (PREDICTED: FRIGIDA-like protein 4a [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 3.8e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 3  QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIETLDHQTKESLDELEKRE 58
          QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKI+TLDHQTKESLDELEKRE
Sbjct: 24 QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIQTLDHQTKESLDELEKRE 78

[Close]

BLAST of Lcy10g002030 vs. NCBI nr
Match: XP_011659019.1 (FRIGIDA-like protein 4a [Cucumis sativus] >KGN44244.1 hypothetical protein Csa_015761 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 3.8e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 3  QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIETLDHQTKESLDELEKRE 58
          QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKI+TLDHQTKESLDELEKRE
Sbjct: 24 QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIQTLDHQTKESLDELEKRE 78

[Close]

BLAST of Lcy10g002030 vs. TAIR 10
Match: AT3G22440.1 (FRIGIDA-like protein )

HSP 1 Score: 83.6 bits (205), Expect = 7.1e-17
Identity = 41/55 (74.55%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 3  QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIETLDHQTKESLDELEKRE 58
          QTSLMTSCTLLW+ELSDHFT+LEQ+L+KKSEAL+  IETLD+QT+ SL+ L++RE
Sbjct: 24 QTSLMTSCTLLWQELSDHFTSLEQNLMKKSEALKQMIETLDNQTQTSLESLKRRE 78

[Close]

BLAST of Lcy10g002030 vs. TAIR 10
Match: AT4G14900.1 (FRIGIDA-like protein )

HSP 1 Score: 77.4 bits (189), Expect = 5.1e-15
Identity = 38/55 (69.09%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 3  QTSLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIETLDHQTKESLDELEKRE 58
          Q SLMTSC LLWKELS+HFT++EQ+L+KKSEALR  IETLD+QT+ S++ L+ RE
Sbjct: 24 QASLMTSCNLLWKELSEHFTSMEQNLMKKSEALRQMIETLDNQTQSSIELLKHRE 78

The following BLAST results are available for this feature:

BLAST of Lcy10g002030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUV4	1.0e-15	74.55	FRIGIDA-like protein 4a OS=Arabidopsis thaliana OX=3702 GN=FRL4A PE=2 SV=1	[more]
Q940H8	7.2e-14	69.09	FRIGIDA-like protein 4b OS=Arabidopsis thaliana OX=3702 GN=FRL4B PE=1 SV=1	[more]

BLAST of Lcy10g002030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TFJ5	1.8e-20	98.18	FRIGIDA-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306...	[more]
A0A0A0K5L7	1.8e-20	98.18	FRIGIDA-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G234160 PE=3 SV=1	[more]
A0A6J1C9V1	1.8e-20	98.18	FRIGIDA-like protein OS=Momordica charantia OX=3673 GN=LOC111009707 PE=3 SV=1	[more]
A0A1S4DWL0	1.8e-20	98.18	FRIGIDA-like protein OS=Cucumis melo OX=3656 GN=LOC103489669 PE=3 SV=1	[more]
A0A6J1KIJ5	1.6e-19	94.55	FRIGIDA-like protein OS=Cucurbita maxima OX=3661 GN=LOC111494276 PE=3 SV=1	[more]

BLAST of Lcy10g002030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138585.1	3.8e-20	98.18	FRIGIDA-like protein 4a [Momordica charantia]	[more]
KAA0040796.1	3.8e-20	98.18	FRIGIDA-like protein 4a [Cucumis melo var. makuwa] >TYK17777.1 FRIGIDA-like prot...	[more]
XP_038874267.1	3.8e-20	98.18	FRIGIDA-like protein 4a [Benincasa hispida]	[more]
XP_016900353.1	3.8e-20	98.18	PREDICTED: FRIGIDA-like protein 4a [Cucumis melo]	[more]
XP_011659019.1	3.8e-20	98.18	FRIGIDA-like protein 4a [Cucumis sativus] >KGN44244.1 hypothetical protein Csa_0...	[more]

BLAST of Lcy10g002030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22440.1	7.1e-17	74.55	FRIGIDA-like protein	[more]
AT4G14900.1	5.1e-15	69.09	FRIGIDA-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31791	FRIGIDA-LIKE PROTEIN 3-RELATED	coord: 3..59
None	No IPR available	PANTHER	PTHR31791:SF2	FRIGIDA-LIKE PROTEIN 4A-RELATED	coord: 3..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g002030.1	Lcy10g002030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0009908	flower development