Lcy10g001750 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g001750
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RING-type E3 ubiquitin transferase
Location	Chr10: 2058395 .. 2062434 (+)
RNA-Seq Expression	Lcy10g001750
Synteny	Lcy10g001750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCGCCGTCTTCTCCACCGCCTCCACCGCAGCCGCCGGATTACTCCCTGAACGTTCTATCGACTCTGGATCGCGACTTCCTAAATCTCGCAGGACTCTCCGCTTTCGCGATGATGATCGTCTACTTCATTTACACCTGTTACGAACGTAAATACTGGAATCGGAGCCGAGATATCGAAGGCGGAGTGCAGCGGCGGACGGTGGCTCAACCTCCGGCTGAAGCGGCGGCGGGTTCTTCCAGAGGCGATCGACGACCGACGTCGACTGCGGTGATCTCGACGAGGCTATTTCAGTATGGAGAGCGAGGAGTGGAAGGGAAAAATGCGGATTGTTCGATTTGCTTGGATGAATTCACAGAAGGTGAGGTTTGTCGAATGTTACCAAAATGCAAACACGTTTTTCATCGATTTTGCATCGATCAATGGCTTCCTAGTGAACGTCATTGTCCTGTTTGTCGTTCCCCTGTTCATGTTCGTATCGTTTATCCCCGTCCGTCTTGAGATTTTTTTTCTTTTTTTTTTTTTTTTTGTTCGTAATTGTGAATAATTTTATTTGTTCGTTGTTCATGATTAGCCCGTTCGAATCGTAACAAATTCTTGAGTTTCATTGGCTGGATTATTGGATTCGAATATTCGCTCATGCTTTTTTGAAAGATCAAAACTGTTTGATTCGTTTCTGGTGCTAGCTCAAGAGAATCACATTGTGTTTGTGTTGTAGATTTTTATGGATGGAGTTCATTGACTGATTCTTTTCCATTTGAAAATTTATGATAAAAGTTATTGATCGATTTGGATGTTTTTAGTACTAATACTTAAGAGTTTCAAATTTGTTTGGTGGATTAATTGACTGAGGCTTTGATTTCTCTCACAAGAATTAGTCCAAATCTCTACTCTACCTGCGAGTCACTAATCTAAGCTGGTTTACGGGTTTAGTGGATAATACACTTATTATCTTACCATATTAAGATAGATAGATATCCACCTCTGCCAATATTAAACTTAAAAAAAAAAGTAAACGTCAATCTAAACATATCTCGAAACACTGATTATGGTTAAAAAATTACATATTTAAGTTATATATCACATATTTTACCATTAATGCATTGAACATGTTGTTTGATTGACACAATAAAATAAATCATTAAATACACATTAAATCAAAAGATCAAGATGTAATTGAGATTCAAAAGTTAATCAAATATTATTCAATTGTAAATGTCCTAATGAAATCAAATTATGCAAATATTTATCCTATTTTTTTATTGATAGCCACCAAGTAATTAAAGTCACGTTTCGATAAATTTTTTTAAATATATATAATCATGAAAATTCACATTTGAAATAATAAAATAATTTTACAATATCTCTCCTACATCAAATTTGTCAGTTAGATTGTGGTGACCTCCTTTAATTATTTGTTCATGAGGCATCTTATCCATTTTTAATATGTAAATTTAGGAATACTTTATTTTTTAGGTAAGTTAAATTTGGAGTTTTTATTTCATTAATTTTATTTTTTGGGTTAAAGTTAATTTCATTAAATTACGCTTTAAATTTGAATTAATGATTTTTTTTACAACATGTGGGGTGGGAGATTCAAATCTCTTAGTCATTAGTATAAGTTTTATGAAAATTAAATTAATGATAAATTTGATTCCTTCTAGTTTTATTGGAAGATGTGTGTTGGAAAAGAAAAAAGTACATTAAACATCAATACCCAATAAGTGGAAAAATTATTAGGTGTTTCCGGTGCAATGAGACTCCCTCTTTAAAACCGTCAGTTGTAAATCTTCAAATTTGTATGTCCCTAATAACCGTATGATGAAAAACTACCACCGGCCTCATTGCACTGCGAGCACCTAAAAATTTCTCCATTGGATTTGGCTTTTTCATAGTTTTTTCTTCGTAAAAATAGGTTTGGGTTAGGTTTCATTTTGGTCCTTAAGTTTGAAAACTCGTCATTTTGGTCTCTGAGATTTGCAATTCATTTCATTTTGGTCCCTCCATCCAATTTTTCGTTAATTCATTTTCATTAATTATTAACATATTGCTGACATGACACTATTTTTTTAATTTCTTAAAAATAAAATAATATTAAATTAATAAAAATATCATTATTATTTTATTTTCTCATCTCTCATTATCAAACCACTACCACCGGATCTGTCGTTCGCCGCTGTTCTCTCTCTTTTTTTTTTTCTCTTTTCCTCCTCTTCTTCTTTTCTTCTTCTTTTCTTTTTCCCTCTTTTCCTCCCTCTATCATCTTCCTCATGCTCTCTCTCCTCCTCTTTCCCCCTTCTTCCTCTTCCATGCAAAATGTCCTCCATTCTCCTTCCTCCAAATCCTTAAACCCATATGAATCTACGTGGGCGAATAGACTAGAAAAAGAAGAGAAAATAGAGATGAGAAAATAAAATAATAATAATAATTTTATTACTTTAATATTATTTTATGAGAAAAATACATTTTTGGTCCCTGATGTTTGATTTTGGTCCCTGAGTTTTCAAACTCGACAATTTAGCTCCTGAGATTTGGATTTCGTTTCATTTTAGTCCCTCCATCCATTTTTTCGTTAAAAACTTACGACTTGCTGACATGACGCTATTTTTTTTATTAAAAAAAATAAAAATATATGAAAATAATAAAAATATTATTATTTTAAAATTTTTATTTCTTCTCTCTCCTCCTCCTCCTTCTTCTCCAGCACACTAGCTAGAATTGTATATAGGATTTTAGTAGGAGAGAGATTTGGAGAGCCTTGTATGGCGAAGAAAACGTGAATGAAGAAAAAGAGGTCTCTCATTTTATAGTCAATTCCAACCATCACATATTAGAAAGATAATATAAAAAAAAATGAAAAAAAAAACTAATAAAATCTAATAAAAAAAAATGAAAAAGGAGACAAATAAATTATTCTAATTGTTCGTTCCAAATTTGTACAACATTTTATTTACCAATCAATCCTCCAAGGAAACAAAAATATTTTTCCAATTATCTCAACCAAAGTTAACAATATTTGATTTGACCATTAATTGTTCCAAAATACTTTTTTTTTCCTTTTATTTTCGAAAATGACAAAATTAAATAAGAAAATAAAATATCAGAAAAATTTAGATGTCTACAAAAACTTTCTTTTTTTAAATTAAGAGTTCGATTAGACACAAATTCGAGAGGTCGGATTCATCTCATAAATAATTTTTTTTTTTAAAAAAAAAAAACCAAACCAAAATTTAAAAAGTTTCCCGCAATACAACATCCACACCAAAACGAAATCACATTCCCAATCCCAATCGAATTTCGTTAACAAAGTGAGTGAATTTCTTTTAAACTTTCCCAATTCTAAAAGAAATCGAAAATCCCATTTTATATATATATATATATCAAACAATCAAATTAAATCAATCCAAATTGTTCCTCCAAATTTCAGCTTCATAATTCTTCAACCCATCCATATGCCTTCTTCGCCGATTTTCTCCCCGCCGGGAGCTTACACATGGATAAGTCCGCTGTTGCCGCCGCCGCCTCCTCCTGCGGCGATTACGAGTTCCGCCACTTTCCACCAGCAGGTGGGATTCTTAAGCTTCATTTTTACCGTCGTGTTTTTGCTTTTCTATTTTCTATATTGCTTCCACCAAATCCGCCGGCTGAACCAAACGAGAATACTCGATATCGAGGAAAGATTATCCCAAGCCAATGAATTGCGAATTCTAGCTCAATTTCAGGCCGATATGGTACGGCAGCGACGGTTGGCGGCGGTGCATCGACGACGCATGGCGGACGAAGAAGAAGAAGCTTCCTCCTCCGCCACCACGACGGTCGCTTTCAAAGACGTCGAGACGGCGGAGGACGGCGATTGCGACTGCACCATATGCATTGAGGGATTTAAGGAGGAAGAGATTTGTAGAGTTGTTGAGAGTTGCGGCCATTTTTTCCATAAGGATTGTGTTGATGAGTGGCTGAAGATTGAGAGCCGTTGCCCGTTGTGCCGCTGTTTGGTTCTTGTTGTTTCTGATAATCCCCATGAAAATCAAGCTTAG

mRNA sequence

ATGCCTCCGCCGTCTTCTCCACCGCCTCCACCGCAGCCGCCGGATTACTCCCTGAACGTTCTATCGACTCTGGATCGCGACTTCCTAAATCTCGCAGGACTCTCCGCTTTCGCGATGATGATCGTCTACTTCATTTACACCTGTTACGAACGTAAATACTGGAATCGGAGCCGAGATATCGAAGGCGGAGTGCAGCGGCGGACGGTGGCTCAACCTCCGGCTGAAGCGGCGGCGGGTTCTTCCAGAGGCGATCGACGACCGACGTCGACTGCGGTGATCTCGACGAGGCTATTTCACTTCATAATTCTTCAACCCATCCATATGCCTTCTTCGCCGATTTTCTCCCCGCCGGGAGCTTACACATGGATAAGTCCGCTGTTGCCGCCGCCGCCTCCTCCTGCGGCGATTACGAGTTCCGCCACTTTCCACCAGCAGGTGGGATTCTTAAGCTTCATTTTTACCGTCGTGTTTTTGCTTTTCTATTTTCTATATTGCTTCCACCAAATCCGCCGGCTGAACCAAACGAGAATACTCGATATCGAGGAAAGATTATCCCAAGCCAATGAATTGCGAATTCTAGCTCAATTTCAGGCCGATATGGTACGGCAGCGACGGTTGGCGGCGGTGCATCGACGACGCATGGCGGACGAAGAAGAAGAAGCTTCCTCCTCCGCCACCACGACGGTCGCTTTCAAAGACGTCGAGACGGCGGAGGACGGCGATTGCGACTGCACCATATGCATTGAGGGATTTAAGGAGGAAGAGATTTGTAGAGTTGTTGAGAGTTGCGGCCATTTTTTCCATAAGGATTGTGTTGATGAGTGGCTGAAGATTGAGAGCCGTTGCCCGTTGTGCCGCTGTTTGGTTCTTGTTGTTTCTGATAATCCCCATGAAAATCAAGCTTAG

Coding sequence (CDS)

ATGCCTCCGCCGTCTTCTCCACCGCCTCCACCGCAGCCGCCGGATTACTCCCTGAACGTTCTATCGACTCTGGATCGCGACTTCCTAAATCTCGCAGGACTCTCCGCTTTCGCGATGATGATCGTCTACTTCATTTACACCTGTTACGAACGTAAATACTGGAATCGGAGCCGAGATATCGAAGGCGGAGTGCAGCGGCGGACGGTGGCTCAACCTCCGGCTGAAGCGGCGGCGGGTTCTTCCAGAGGCGATCGACGACCGACGTCGACTGCGGTGATCTCGACGAGGCTATTTCACTTCATAATTCTTCAACCCATCCATATGCCTTCTTCGCCGATTTTCTCCCCGCCGGGAGCTTACACATGGATAAGTCCGCTGTTGCCGCCGCCGCCTCCTCCTGCGGCGATTACGAGTTCCGCCACTTTCCACCAGCAGGTGGGATTCTTAAGCTTCATTTTTACCGTCGTGTTTTTGCTTTTCTATTTTCTATATTGCTTCCACCAAATCCGCCGGCTGAACCAAACGAGAATACTCGATATCGAGGAAAGATTATCCCAAGCCAATGAATTGCGAATTCTAGCTCAATTTCAGGCCGATATGGTACGGCAGCGACGGTTGGCGGCGGTGCATCGACGACGCATGGCGGACGAAGAAGAAGAAGCTTCCTCCTCCGCCACCACGACGGTCGCTTTCAAAGACGTCGAGACGGCGGAGGACGGCGATTGCGACTGCACCATATGCATTGAGGGATTTAAGGAGGAAGAGATTTGTAGAGTTGTTGAGAGTTGCGGCCATTTTTTCCATAAGGATTGTGTTGATGAGTGGCTGAAGATTGAGAGCCGTTGCCCGTTGTGCCGCTGTTTGGTTCTTGTTGTTTCTGATAATCCCCATGAAAATCAAGCTTAG

Protein sequence

MPPPSSPPPPPQPPDYSLNVLSTLDRDFLNLAGLSAFAMMIVYFIYTCYERKYWNRSRDIEGGVQRRTVAQPPAEAAAGSSRGDRRPTSTAVISTRLFHFIILQPIHMPSSPIFSPPGAYTWISPLLPPPPPPAAITSSATFHQQVGFLSFIFTVVFLLFYFLYCFHQIRRLNQTRILDIEERLSQANELRILAQFQADMVRQRRLAAVHRRRMADEEEEASSSATTTVAFKDVETAEDGDCDCTICIEGFKEEEICRVVESCGHFFHKDCVDEWLKIESRCPLCRCLVLVVSDNPHENQA

Homology

[Close]

BLAST of Lcy10g001750 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.4e-12
Identity = 51/174 (29.31%), Postives = 82/174 (47.13%), Query Frame = 0


Query: 128 PPPPPPAAITSSATFHQQVGFLSFIFTVVFLLFYFLYCFHQIRRLNQTRIL---DIEERL 187
           PPPPPP     S      +  +  I   +FL+F+      Q RR++   +      ++  
Sbjct: 28  PPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTNQQED 87

Query: 188 SQANELRILAQFQADMVRQRRLAAVHRRRMADEEEEASSSATTTVAFKDVETAEDGDCDC 247
               E R  + F    V Q     +HR         ++ ++ T V FK  E   DG  +C
Sbjct: 88  EDETEERDFSDFH--HVWQIPTVGLHR---------SAINSITVVGFKKGEGIIDG-TEC 147

Query: 248 TICIEGFKEEEICRVVESCGHFFHKDCVDEWLKIESRCPLCRCLVLVVSDNPHE 299
           ++C+  F+E+E  R++  C H FH +C+D WL     CPLCR  VL++++ PH+
Sbjct: 148 SVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQ 189

[Close]

BLAST of Lcy10g001750 vs. ExPASy Swiss-Prot
Match: Q9ZV51 (RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.8e-12
Identity = 33/98 (33.67%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 210 HRRRMADEEEEASSSATTTVA-------FKDVETAEDGDCDCTICIEGFKEEEICRVVES 269
           HRRR  +  +E+S   ++          F +  T    + DC +C +GF++ + CR +  
Sbjct: 69  HRRRRRNRRQESSDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPG 128

Query: 270 CGHFFHKDCVDEWLKIESRCPLCRCLVLVVSDNPHENQ 301
           CGH FH+ CVD WL   S CP+CR  V +  ++P E +
Sbjct: 129 CGHVFHRKCVDTWLLKASTCPICRARVRLWEEDPQEGE 166

[Close]

BLAST of Lcy10g001750 vs. ExPASy Swiss-Prot
Match: Q9SL78 (Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.0e-08
Identity = 45/171 (26.32%), Postives = 75/171 (43.86%), Query Frame = 0


Query: 130 PPPPAAITSSATFHQQV----GFLSFIFTVVFLLFYFLYCFHQIRRLNQTRILDIEERLS 189
           PPPP    +S  F   +    G  S +FT+ F+L  +  CFH                  
Sbjct: 25  PPPPNLYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAKCFH------------------ 84

Query: 190 QANELRILAQFQADMVRQRRL--AAVHRRRMADEEEEASSSATTTVAFKDVETAEDGDCD 249
             N+LR       + +R  RL     +R       ++ +  +     F  ++  + G  +
Sbjct: 85  --NDLRSETDSDGERIRHDRLWQGLFNRSSRFSGLDKKAIESLPFFRFSALKGLKQG-LE 144

Query: 250 CTICIEGFKEEEICRVVESCGHFFHKDCVDEWLKIESRCPLCRCLVLVVSD 295
           C++C+  F++ EI R++  C H FH  C+D+WL+  + CPLCR  V +  D
Sbjct: 145 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDD 174

[Close]

BLAST of Lcy10g001750 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.6e-08
Identity = 48/179 (26.82%), Postives = 78/179 (43.58%), Query Frame = 0


Query: 128 PPPPPPAAITSSATFHQ-----------QVGFLSFIFTVVFLLFYFLYCFHQIRRLNQTR 187
           PPPPPP+   +S  F +            +  +  + T   L+ Y+++        +Q  
Sbjct: 17  PPPPPPSTTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQID 76

Query: 188 ILDIEERLSQANELRILAQFQADMVRQRRLAAVHRRRMADEEEEASSSATTTVAFK--DV 247
           I     R S  N L I +  + +    R L            +E++  A     FK  DV
Sbjct: 77  IFRRRRRSSDQNPLMIYSPHEVN----RGL------------DESAIRAIPVFKFKKRDV 136

Query: 248 ETAEDGDC----DCTICIEGFKEEEICRVVESCGHFFHKDCVDEWLKIESRCPLCRCLV 290
              E+       +C++C+  F+E+E  R++ +C H FH DC+D WL+  + CPLCR  V
Sbjct: 137 VAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179

[Close]

BLAST of Lcy10g001750 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.6e-08
Identity = 46/179 (25.70%), Postives = 78/179 (43.58%), Query Frame = 0


Query: 122 WISPLLPPPPP------PAAITSSATFHQQVGFLSFIFTVVFLLFYFLYCFHQIRRLNQT 181
           W   + PPPPP       ++ +SS+     +  +  + + + L+ Y+        R +QT
Sbjct: 29  WCYLIFPPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQT 88

Query: 182 RILDIEERLSQANELRILAQFQADMVRQRRLAAVHRRRMADEEEEASSSATTTVAFKDVE 241
                    S +  L +    +      +R++        D   E+   + T   +K  +
Sbjct: 89  ---------SSSETLNLNHNGEGFFSSTQRIST-----NGDGLNESMIKSITVYKYKSGD 148

Query: 242 TAEDGDCDCTICIEGFKEEEICRVVESCGHFFHKDCVDEWLKIESRCPLCRCLVLVVSD 295
              DG  DC++C+  F+E E  R++  C H FH  C+D WLK  S CPLCR  V  V++
Sbjct: 149 GFVDGS-DCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNN 192

[Close]

BLAST of Lcy10g001750 vs. ExPASy TrEMBL
Match: A0A5A7VMH1 (RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00560 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.5e-28
Identity = 74/149 (49.66%), Postives = 99/149 (66.44%), Query Frame = 0


Query: 146 VGFLSFIFTVVFLLFYFLYCFHQIRRLNQTRILDIEERLSQANELRILAQFQADMVRQRR 205
           +GFL      + L+ +  + +H   RLNQTR LDIE+RL +   +++LAQ QA+++RQR+
Sbjct: 1   MGFLFVSVVCIILIIFLFHIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEIIRQRQ 60

Query: 206 LAAVHRRRMADEEEEASSSATTTVAFKDVETAEDGD-CDCTICIEGFKEEEICRVVESCG 265
                 +     E E +SSA  TVA+K  +    G  C C ICIE F++EEIC VVESCG
Sbjct: 61  TTT---QSNDTTEGEETSSAVMTVAYKVKDNEAGGSYCCCAICIEEFEDEEICGVVESCG 120

Query: 266 HFFHKDCVDEWLKIESRCPLCRCLVLVVS 294
           H FH+DC+D+WL+IESRCPLCRCLV  VS
Sbjct: 121 HCFHEDCMDQWLRIESRCPLCRCLVHAVS 146

[Close]

BLAST of Lcy10g001750 vs. ExPASy TrEMBL
Match: A0A5D3BE50 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002270 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-27
Identity = 73/149 (48.99%), Postives = 98/149 (65.77%), Query Frame = 0


Query: 146 VGFLSFIFTVVFLLFYFLYCFHQIRRLNQTRILDIEERLSQANELRILAQFQADMVRQRR 205
           +GFL      + L+ +  + +H   RLNQTR LDIE+RL +   +++LAQ QA+++RQR+
Sbjct: 1   MGFLFVSVVCIILIIFLFHIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEIIRQRQ 60

Query: 206 LAAVHRRRMADEEEEASSSATTTVAFKDVETAEDGD-CDCTICIEGFKEEEICRVVESCG 265
                 +     E E +SSA   VA+K  +    G  C C ICIE F++EEIC VVESCG
Sbjct: 61  TTT---QSNDTTEGEETSSAVMKVAYKVKDNEAGGSYCCCAICIEEFEDEEICGVVESCG 120

Query: 266 HFFHKDCVDEWLKIESRCPLCRCLVLVVS 294
           H FH+DC+D+WL+IESRCPLCRCLV  VS
Sbjct: 121 HCFHEDCMDQWLRIESRCPLCRCLVHAVS 146

[Close]

BLAST of Lcy10g001750 vs. ExPASy TrEMBL
Match: A0A6J1HJU0 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-26
Identity = 73/157 (46.50%), Postives = 103/157 (65.61%), Query Frame = 0


Query: 143 HQQVGF--LSFIFTVVFLLFYFLYCFHQIRRLNQTRILDIEERLSQANELRILAQFQADM 202
           H+ +G   LS I  +VFL  +   C+H      QTR LD+E+     +  R+ A+F+A+ 
Sbjct: 3   HELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQ---TNHATRLFARFRAEF 62

Query: 203 VRQRRLAAVHRRRMADEEEEASSSATTTVAFKDVETAEDGDCD--CTICIEGFKEEEICR 262
           ++Q++  A    R    EEEA +S  T VA++D++T E+ D D  C ICIEGF+EEEIC 
Sbjct: 63  MQQQQSIAAPPPRSNTAEEEA-ASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICG 122

Query: 263 VVESCGHFFHKDCVDEWLKIESRCPLCRCLVLVVSDN 296
           V++ CGH FHK C+D+WL+I SRCPLCRCL+ VVS+N
Sbjct: 123 VLDRCGHCFHKVCIDQWLRIGSRCPLCRCLIRVVSEN 155

[Close]

BLAST of Lcy10g001750 vs. ExPASy TrEMBL
Match: A0A6J1DYV0 (E3 ubiquitin-protein ligase RING1-like OS=Momordica charantia OX=3673 GN=LOC111024783 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.5e-26
Identity = 77/190 (40.53%), Postives = 108/190 (56.84%), Query Frame = 0


Query: 128 PPPPPPA-----------AITSSATFHQQV--GFLSFIFTVVFLLFYFLYCFHQIRRLNQ 187
           PP PPP+            IT  +TF  ++  GF+ FI   + +LF+ LY +H+   L+Q
Sbjct: 4   PPTPPPSFSVQYSLPVTVVITHRSTFDPKIGFGFVGFICFSLIVLFFILYSYHRRIMLSQ 63

Query: 188 TRIL-DIEERLSQANELRILAQFQADMVRQRRLAAVHRRRMADEEEEASSSATTTVAFKD 247
           TR+  DIE R+  +    I+   +A            R++ +   +    ++ T VA  +
Sbjct: 64  TRVYDDIESRVQVSRVFTIVLSERA------------RQQPSPPPQTVEEASATAVAIIE 123

Query: 248 VETAEDGDCDCTICIEGFKEEEICRVVESCGHFFHKDCVDEWLKIESRCPLCRCLVLVVS 302
            E   D D DC IC EGF+E+++CRV+E CGHFFHKDCVD+WL +E  CPLCRC VL+VS
Sbjct: 124 AEEIIDSDRDCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERGCPLCRCFVLLVS 181

[Close]

BLAST of Lcy10g001750 vs. ExPASy TrEMBL
Match: A0A6J1I5C3 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469386 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.3e-26
Identity = 75/157 (47.77%), Postives = 102/157 (64.97%), Query Frame = 0


Query: 143 HQQVGF--LSFIFTVVFLLFYFLYCFHQIRRLNQTRILDIEERLSQANELRILAQFQADM 202
           HQ +G   L  I  +VFL  +   C+H    L QTR LD+E+     +  R+ A+F+A++
Sbjct: 3   HQLMGLMVLGAIAIIVFLPIFMFRCYHNRFMLYQTRALDVEQ---TNHATRLFARFRAEV 62

Query: 203 VRQRRLAAVHRRRMADEEEEASSSATTTVAFKDVETAEDGDCD--CTICIEGFKEEEICR 262
           +RQ++  AV   R    EEEA +S  T VA++D++  ++ D D  C ICIEGF+EEEIC 
Sbjct: 63  MRQQQSIAVPPPRPNTAEEEA-ASIVTKVAYRDIKPTKEADSDDCCAICIEGFEEEEICG 122

Query: 263 VVESCGHFFHKDCVDEWLKIESRCPLCRCLVLVVSDN 296
           VV+ C H FHK C+D+WL I SRCPLCRCLV VVS+N
Sbjct: 123 VVDGCDHCFHKVCIDKWLGIVSRCPLCRCLVRVVSEN 155

[Close]

BLAST of Lcy10g001750 vs. NCBI nr
Match: KAG7019192.1 (E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198.4 bits (503), Expect = 9.1e-47
Identity = 141/323 (43.65%), Postives = 180/323 (55.73%), Query Frame = 0


Query: 10  PPQPPDYSLNVLSTLDRDFLNLAGLSAFAMMIVYFIYTCYERKYWNRSRDIEGGVQRRTV 69
           PP  P+ S++VLST+D DFLN AGL   A+ I+YFIYT YE KYWNRSRDIEGG      
Sbjct: 3   PPPSPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGG------ 62

Query: 70  AQPPAEAAAGSSRGDRRPTSTAVISTRLFHF-------------IILQPI-------HMP 129
            +  A AA GSS G+ R  +TAVISTRLF +             I L           +P
Sbjct: 63  -RSAATAAVGSS-GEDRGGATAVISTRLFQYGERGMVGQNADCSICLDEFVEGEICRMLP 122

Query: 130 S-SPIFSPPGAYTWI-----SPLLPPPP-------PPAAITSSATFHQQVGF--LSFIFT 189
               +F       W+      PL   P         P AI S    H+ +G   LS I  
Sbjct: 123 KCKHVFHRFCIDQWLPNERHCPLCRSPVHNSATFLNPTAIMSPNMSHELMGLIVLSAIAI 182

Query: 190 VVFLLFYFLYCFHQIRRLNQTRILDIEERLSQANELRILAQFQADMVRQRRLAAVHRRRM 249
            VFL  +   C+H      QTR LD+E+     +  R+ A+F+A+ +RQ++       R 
Sbjct: 183 TVFLSIFMFRCYHNHLMQYQTRALDVEQ---TNHATRLFARFRAEFMRQQQSIVAPPPRS 242

Query: 250 ADEEEEASSSATTTVAFKDVETAEDGDCD--CTICIEGFKEEEICRVVESCGHFFHKDCV 296
              EEEA +S  T VA+KD++T E+ D D  C ICIEGF+EEE+C V++ CGH FHK C+
Sbjct: 243 NTAEEEA-ASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEELCGVLDRCGHCFHKVCI 302

[Close]

BLAST of Lcy10g001750 vs. NCBI nr
Match: KAA0067736.1 (RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 7.2e-28
Identity = 74/149 (49.66%), Postives = 99/149 (66.44%), Query Frame = 0


Query: 146 VGFLSFIFTVVFLLFYFLYCFHQIRRLNQTRILDIEERLSQANELRILAQFQADMVRQRR 205
           +GFL      + L+ +  + +H   RLNQTR LDIE+RL +   +++LAQ QA+++RQR+
Sbjct: 1   MGFLFVSVVCIILIIFLFHIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEIIRQRQ 60

Query: 206 LAAVHRRRMADEEEEASSSATTTVAFKDVETAEDGD-CDCTICIEGFKEEEICRVVESCG 265
                 +     E E +SSA  TVA+K  +    G  C C ICIE F++EEIC VVESCG
Sbjct: 61  TTT---QSNDTTEGEETSSAVMTVAYKVKDNEAGGSYCCCAICIEEFEDEEICGVVESCG 120

Query: 266 HFFHKDCVDEWLKIESRCPLCRCLVLVVS 294
           H FH+DC+D+WL+IESRCPLCRCLV  VS
Sbjct: 121 HCFHEDCMDQWLRIESRCPLCRCLVHAVS 146

[Close]

BLAST of Lcy10g001750 vs. NCBI nr
Match: KAG6583431.1 (RING-H2 finger protein ATL5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.3 bits (334), Expect = 3.6e-27
Identity = 76/157 (48.41%), Postives = 102/157 (64.97%), Query Frame = 0


Query: 143 HQQVG--FLSFIFTVVFLLFYFLYCFHQIRRLNQTRILDIEERLSQANELRILAQFQADM 202
           H+ +G   LS I  +VFL  +   C+H      QTR LD+E+     +  R+ A+F+A+ 
Sbjct: 7   HELMGVIVLSAIAIIVFLSIFMFRCYHNHLMQYQTRALDVEQ---TNHATRLFARFRAEF 66

Query: 203 VRQRRLAAVHRRRMADEEEEASSSATTTVAFKDVETAEDGDCD--CTICIEGFKEEEICR 262
           +RQ++       R    EEEA +S  T VA+KD++T E+ D D  C ICIEGF+EEEIC 
Sbjct: 67  MRQQQSIVAPPPRSNTAEEEA-ASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEICG 126

Query: 263 VVESCGHFFHKDCVDEWLKIESRCPLCRCLVLVVSDN 296
           V++ CGH FHK C+D+WL IESRCPLCRCLV VVS+N
Sbjct: 127 VLDRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSEN 159

[Close]

BLAST of Lcy10g001750 vs. NCBI nr
Match: TYJ97407.1 (RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 3.6e-27
Identity = 73/149 (48.99%), Postives = 98/149 (65.77%), Query Frame = 0


Query: 146 VGFLSFIFTVVFLLFYFLYCFHQIRRLNQTRILDIEERLSQANELRILAQFQADMVRQRR 205
           +GFL      + L+ +  + +H   RLNQTR LDIE+RL +   +++LAQ QA+++RQR+
Sbjct: 1   MGFLFVSVVCIILIIFLFHIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEIIRQRQ 60

Query: 206 LAAVHRRRMADEEEEASSSATTTVAFKDVETAEDGD-CDCTICIEGFKEEEICRVVESCG 265
                 +     E E +SSA   VA+K  +    G  C C ICIE F++EEIC VVESCG
Sbjct: 61  TTT---QSNDTTEGEETSSAVMKVAYKVKDNEAGGSYCCCAICIEEFEDEEICGVVESCG 120

Query: 266 HFFHKDCVDEWLKIESRCPLCRCLVLVVS 294
           H FH+DC+D+WL+IESRCPLCRCLV  VS
Sbjct: 121 HCFHEDCMDQWLRIESRCPLCRCLVHAVS 146

[Close]

BLAST of Lcy10g001750 vs. NCBI nr
Match: XP_023520574.1 (RING-H2 finger protein ATL64-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.5 bits (332), Expect = 6.1e-27
Identity = 75/157 (47.77%), Postives = 104/157 (66.24%), Query Frame = 0


Query: 143 HQQVGF--LSFIFTVVFLLFYFLYCFHQIRRLNQTRILDIEERLSQANELRILAQFQADM 202
           H+ +G   LS I  +VFL  +   C+H     NQTR LD+E+     +  R+ A+F+A++
Sbjct: 7   HELMGLIVLSAIAIIVFLPIFMFRCYHNRFMQNQTRALDVEQ---PNHATRLFARFRAEV 66

Query: 203 VRQRRLAAVHRRRMADEEEEASSSATTTVAFKDVETAEDGDCD--CTICIEGFKEEEICR 262
           +R++   A    R    EEEA +S  T VA+KD++T E+ D D  C ICIEGF+E+EIC 
Sbjct: 67  MRRQSSIATTPPRPNTAEEEA-ASIVTKVAYKDIKTTEEADSDDCCAICIEGFEEDEICG 126

Query: 263 VVESCGHFFHKDCVDEWLKIESRCPLCRCLVLVVSDN 296
           V++ CGH FHK C+D+WL I+SRCPLCRCLV VVS+N
Sbjct: 127 VLDRCGHCFHKICIDQWLGIKSRCPLCRCLVRVVSEN 159

[Close]

BLAST of Lcy10g001750 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-13
Identity = 51/174 (29.31%), Postives = 82/174 (47.13%), Query Frame = 0


Query: 128 PPPPPPAAITSSATFHQQVGFLSFIFTVVFLLFYFLYCFHQIRRLNQTRIL---DIEERL 187
           PPPPPP     S      +  +  I   +FL+F+      Q RR++   +      ++  
Sbjct: 28  PPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTNQQED 87

Query: 188 SQANELRILAQFQADMVRQRRLAAVHRRRMADEEEEASSSATTTVAFKDVETAEDGDCDC 247
               E R  + F    V Q     +HR         ++ ++ T V FK  E   DG  +C
Sbjct: 88  EDETEERDFSDFH--HVWQIPTVGLHR---------SAINSITVVGFKKGEGIIDG-TEC 147

Query: 248 TICIEGFKEEEICRVVESCGHFFHKDCVDEWLKIESRCPLCRCLVLVVSDNPHE 299
           ++C+  F+E+E  R++  C H FH +C+D WL     CPLCR  VL++++ PH+
Sbjct: 148 SVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQ 189

[Close]

BLAST of Lcy10g001750 vs. TAIR 10
Match: AT2G18670.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 4.1e-13
Identity = 33/98 (33.67%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 210 HRRRMADEEEEASSSATTTVA-------FKDVETAEDGDCDCTICIEGFKEEEICRVVES 269
           HRRR  +  +E+S   ++          F +  T    + DC +C +GF++ + CR +  
Sbjct: 69  HRRRRRNRRQESSDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPG 128

Query: 270 CGHFFHKDCVDEWLKIESRCPLCRCLVLVVSDNPHENQ 301
           CGH FH+ CVD WL   S CP+CR  V +  ++P E +
Sbjct: 129 CGHVFHRKCVDTWLLKASTCPICRARVRLWEEDPQEGE 166

[Close]

BLAST of Lcy10g001750 vs. TAIR 10
Match: AT2G20030.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-09
Identity = 45/171 (26.32%), Postives = 75/171 (43.86%), Query Frame = 0


Query: 130 PPPPAAITSSATFHQQV----GFLSFIFTVVFLLFYFLYCFHQIRRLNQTRILDIEERLS 189
           PPPP    +S  F   +    G  S +FT+ F+L  +  CFH                  
Sbjct: 25  PPPPNLYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAKCFH------------------ 84

Query: 190 QANELRILAQFQADMVRQRRL--AAVHRRRMADEEEEASSSATTTVAFKDVETAEDGDCD 249
             N+LR       + +R  RL     +R       ++ +  +     F  ++  + G  +
Sbjct: 85  --NDLRSETDSDGERIRHDRLWQGLFNRSSRFSGLDKKAIESLPFFRFSALKGLKQG-LE 144

Query: 250 CTICIEGFKEEEICRVVESCGHFFHKDCVDEWLKIESRCPLCRCLVLVVSD 295
           C++C+  F++ EI R++  C H FH  C+D+WL+  + CPLCR  V +  D
Sbjct: 145 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDD 174

[Close]

BLAST of Lcy10g001750 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 4.7e-09
Identity = 48/179 (26.82%), Postives = 78/179 (43.58%), Query Frame = 0


Query: 128 PPPPPPAAITSSATFHQ-----------QVGFLSFIFTVVFLLFYFLYCFHQIRRLNQTR 187
           PPPPPP+   +S  F +            +  +  + T   L+ Y+++        +Q  
Sbjct: 17  PPPPPPSTTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQID 76

Query: 188 ILDIEERLSQANELRILAQFQADMVRQRRLAAVHRRRMADEEEEASSSATTTVAFK--DV 247
           I     R S  N L I +  + +    R L            +E++  A     FK  DV
Sbjct: 77  IFRRRRRSSDQNPLMIYSPHEVN----RGL------------DESAIRAIPVFKFKKRDV 136

Query: 248 ETAEDGDC----DCTICIEGFKEEEICRVVESCGHFFHKDCVDEWLKIESRCPLCRCLV 290
              E+       +C++C+  F+E+E  R++ +C H FH DC+D WL+  + CPLCR  V
Sbjct: 137 VAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179

[Close]

BLAST of Lcy10g001750 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 4.7e-09
Identity = 46/179 (25.70%), Postives = 78/179 (43.58%), Query Frame = 0


Query: 122 WISPLLPPPPP------PAAITSSATFHQQVGFLSFIFTVVFLLFYFLYCFHQIRRLNQT 181
           W   + PPPPP       ++ +SS+     +  +  + + + L+ Y+        R +QT
Sbjct: 29  WCYLIFPPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQT 88

Query: 182 RILDIEERLSQANELRILAQFQADMVRQRRLAAVHRRRMADEEEEASSSATTTVAFKDVE 241
                    S +  L +    +      +R++        D   E+   + T   +K  +
Sbjct: 89  ---------SSSETLNLNHNGEGFFSSTQRIST-----NGDGLNESMIKSITVYKYKSGD 148

Query: 242 TAEDGDCDCTICIEGFKEEEICRVVESCGHFFHKDCVDEWLKIESRCPLCRCLVLVVSD 295
              DG  DC++C+  F+E E  R++  C H FH  C+D WLK  S CPLCR  V  V++
Sbjct: 149 GFVDGS-DCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNN 192

The following BLAST results are available for this feature:

BLAST of Lcy10g001750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX93	4.4e-12	29.31	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q9ZV51	5.8e-12	33.67	RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1	[more]
Q9SL78	3.0e-08	26.32	Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 P...	[more]
P93823	6.6e-08	26.82	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
Q9LF64	6.6e-08	25.70	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]

BLAST of Lcy10g001750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VMH1	3.5e-28	49.66	RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BE50	1.7e-27	48.99	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1HJU0	1.1e-26	46.50	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742...	[more]
A0A6J1DYV0	2.5e-26	40.53	E3 ubiquitin-protein ligase RING1-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1I5C3	4.3e-26	47.77	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469386 P...	[more]

BLAST of Lcy10g001750 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019192.1	9.1e-47	43.65	E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0067736.1	7.2e-28	49.66	RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]	[more]
KAG6583431.1	3.6e-27	48.41	RING-H2 finger protein ATL5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
TYJ97407.1	3.6e-27	48.99	RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]	[more]
XP_023520574.1	6.1e-27	47.77	RING-H2 finger protein ATL64-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy10g001750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10380.1	3.1e-13	29.31	RING/U-box superfamily protein	[more]
AT2G18670.1	4.1e-13	33.67	RING/U-box superfamily protein	[more]
AT2G20030.1	2.1e-09	26.32	RING/U-box superfamily protein	[more]
AT1G04360.1	4.7e-09	26.82	RING/U-box superfamily protein	[more]
AT5G17600.1	4.7e-09	25.70	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 244..285 e-value: 1.1E-5 score: 34.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 243..286 e-value: 7.7E-12 score: 45.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 244..286 score: 13.300693
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 203..290 e-value: 9.9E-18 score: 65.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..88
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 139..287
None	No IPR available	PANTHER	PTHR14155:SF550	RING-H2 FINGER PROTEIN ATL40	coord: 139..287
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 235..293

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g001750.1	Lcy10g001750.1	mRNA