Lcy10g001050 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g001050
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	serine/arginine-rich splicing factor SR45a-like
Location	Chr10: 1306543 .. 1307549 (+)
RNA-Seq Expression	Lcy10g001050
Synteny	Lcy10g001050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCTCAGAACATTGGGGTTGTATGCCCTGCATTTCTCTCTTTTTTTGCCAATTGAATCCTGTGTTTCAGTATTTTAACCTTTTTTCATTATAAATTTGACTCTAAACTGTGACTTGCTCTTCTTGTATTTTTCTTAGATGGACGATTGAGTTGTCTCACTTTTTATCTTTAATTTTTTGATAGGCTCGAAGACGGAGAGGTAGAACTCCTACTCCAGGGAGATATCTTGGACTTAGAACAGTTCATGGTGAGGTTTTAACCTAATGTTTGGTTTATTGCTGTGAAATATCTTGATGTTTCTGTCTAATCCTTTTCTTTTCAACAGTGAGGCGTAGATCACGCAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCTTATAGAAGCTCAAGCCACTCATCTCATTATTCATCTGAACGTAGCAGGAGCAGATCCCATTCTCCTAACCAGCATGGAAGATCATATGGTTCCCCATACCGCTATAGATCATACTCCCCTTACAGCCGACGAAGATATGATTCTCCCTATTATAGGCATCATAGATCGTATTCTCGATCCCGCTCTCCTTATAGGTCACCTGCTAGGAGACGTGACAGGTCGTACTCACCTTATGACTATTATTCCCCTGATCCTTACTACAGAAGGCACAGGTATCGGTCAGTTTCTAGGAGTGTTTCACCAAAGGCCAGGATTTCTAGCAGACGTTATTCTCGCAGTTATTCTCCAAGGCCTAGGAGAAGAACCTTGAGGAGTTGCTCTCGCAGCCCCTCTTGGGAATCAAGGAGAAGCTATTCACGTAGTACTTCCCCTGAACGAAGCAGGAGATCAGGGAGCTATTCACGTAGTGTTTCTCCTGAACCAAGAAGCTCGAGGAGTCGCTCTCGCAGCCATACCCCGAGACGACATGACTACAAGCTTTATCGCCCACAGAAGAGAGGGTATTCTGGTGGTAGTCGATCAAGAAGTCAAAGCGTGGTTTCAAGATCTGTTAGTCCTGCATGA

mRNA sequence

ATGAAGTCTCAGAACATTGGGGCTCGAAGACGGAGAGGTAGAACTCCTACTCCAGGGAGATATCTTGGACTTAGAACAGTTCATGTGAGGCGTAGATCACGCAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCTTATAGAAGCTCAAGCCACTCATCTCATTATTCATCTGAACGTAGCAGGAGCAGATCCCATTCTCCTAACCAGCATGGAAGATCATATGGTTCCCCATACCGCTATAGATCATACTCCCCTTACAGCCGACGAAGATATGATTCTCCCTATTATAGGCATCATAGATCGTATTCTCGATCCCGCTCTCCTTATAGGTCACCTGCTAGGAGACGTGACAGGTCGTACTCACCTTATGACTATTATTCCCCTGATCCTTACTACAGAAGGCACAGGTATCGGTCAGTTTCTAGGAGTGTTTCACCAAAGGCCAGGATTTCTAGCAGACGTTATTCTCGCAGTTATTCTCCAAGGCCTAGGAGAAGAACCTTGAGGAGTTGCTCTCGCAGCCCCTCTTGGGAATCAAGGAGAAGCTATTCACGTAGTACTTCCCCTGAACGAAGCAGGAGATCAGGGAGCTATTCACGTAGTGTTTCTCCTGAACCAAGAAGCTCGAGGAGTCGCTCTCGCAGCCATACCCCGAGACGACATGACTACAAGCTTTATCGCCCACAGAAGAGAGGGTATTCTGGTGGTAGTCGATCAAGAAGTCAAAGCGTGGTTTCAAGATCTGTTAGTCCTGCATGA

Coding sequence (CDS)

ATGAAGTCTCAGAACATTGGGGCTCGAAGACGGAGAGGTAGAACTCCTACTCCAGGGAGATATCTTGGACTTAGAACAGTTCATGTGAGGCGTAGATCACGCAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCTTATAGAAGCTCAAGCCACTCATCTCATTATTCATCTGAACGTAGCAGGAGCAGATCCCATTCTCCTAACCAGCATGGAAGATCATATGGTTCCCCATACCGCTATAGATCATACTCCCCTTACAGCCGACGAAGATATGATTCTCCCTATTATAGGCATCATAGATCGTATTCTCGATCCCGCTCTCCTTATAGGTCACCTGCTAGGAGACGTGACAGGTCGTACTCACCTTATGACTATTATTCCCCTGATCCTTACTACAGAAGGCACAGGTATCGGTCAGTTTCTAGGAGTGTTTCACCAAAGGCCAGGATTTCTAGCAGACGTTATTCTCGCAGTTATTCTCCAAGGCCTAGGAGAAGAACCTTGAGGAGTTGCTCTCGCAGCCCCTCTTGGGAATCAAGGAGAAGCTATTCACGTAGTACTTCCCCTGAACGAAGCAGGAGATCAGGGAGCTATTCACGTAGTGTTTCTCCTGAACCAAGAAGCTCGAGGAGTCGCTCTCGCAGCCATACCCCGAGACGACATGACTACAAGCTTTATCGCCCACAGAAGAGAGGGTATTCTGGTGGTAGTCGATCAAGAAGTCAAAGCGTGGTTTCAAGATCTGTTAGTCCTGCATGA

Protein sequence

MKSQNIGARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRSSSHSSHYSSERSRSRSHSPNQHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSRSRSPYRSPARRRDRSYSPYDYYSPDPYYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPSWESRRSYSRSTSPERSRRSGSYSRSVSPEPRSSRSRSRSHTPRRHDYKLYRPQKRGYSGGSRSRSQSVVSRSVSPA

Homology

[Close]

BLAST of Lcy10g001050 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.7e-18
Identity = 131/270 (48.52%), Postives = 143/270 (52.96%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRSSSHSSHYSSERSRSRSHS 67
           ARRRRGRTPTPG+YLGLRT   R +S SYS RRS S S  RS S+SS       R RS+S
Sbjct: 151 ARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSCSRSRSRSYSS------DRGRSYS 210

Query: 68  PNQHGRSYGSPYRYRSYSP-YSRRRYDSPYYRHHRSYSRSRSPYRSPARRRDRSYSPYDY 127
           P     SYG   R  SYSP Y RRR+ SP        SRS SP     RRRDRSYSPY  
Sbjct: 211 P-----SYGRRGRSSSYSPFYRRRRFYSP--------SRSPSPDDRYNRRRDRSYSPY-- 270

Query: 128 YSPDPYYRRHRYRSVSRSVSPKAR--ISSRRY---SRSYSPRPRRRTLRSCSRSPSWESR 187
                Y RR R RS SR+   + R     RRY   SRSYSPR R R  RSC  SP +  R
Sbjct: 271 -----YRRRDRSRSYSRNCRARDRSPYYMRRYRSRSRSYSPRYRARD-RSC--SPYYRGR 330

Query: 188 -RSYS-------RSTSPERS--RRSGSYSRSVSP---------EPRSSRSRSRSHTPRRH 247
            RSYS       RS SPE    RR  S S SVSP          PR  R  SRS + RRH
Sbjct: 331 DRSYSPHYQGRDRSYSPESRYYRRHRSVSGSVSPGGRSMSRSISPRKGRKESRSKS-RRH 382

Query: 248 DYKLYRPQKRGYSGGSRSRSQSVVSRSVSP 253
           D    R     +S  +RS +    SRSVSP
Sbjct: 391 D----RQSSMCHSRSARSST----SRSVSP 382

[Close]

BLAST of Lcy10g001050 vs. ExPASy TrEMBL
Match: A0A1S3C508 (serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC103497100 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 4.8e-79
Identity = 202/259 (77.99%), Postives = 213/259 (82.24%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSH 67
           ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY RSSS S+HYSS+RSRSRS 
Sbjct: 118 ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSR 177

Query: 68  SPNQHGRSYGSPYRYRSY--------SPYSRRRYDSP-YYRHHRSYSRSRSPYRSPARRR 127
           S N+H RSYGSPY  RSY        SPY RRRYDSP YYRHHRSYSRS SPYR  +  R
Sbjct: 178 SINRHRRSYGSPYHRRSYSYSRRRYDSPYYRRRYDSPDYYRHHRSYSRSSSPYRRWS--R 237

Query: 128 DRSYSPYDYYSPDPYYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPS 187
           DRSYSPYDYYSPDPYYRRHRYRSVSRS+SPK+R + R YSRSYSP PRRRTLR+ S SPS
Sbjct: 238 DRSYSPYDYYSPDPYYRRHRYRSVSRSLSPKSR-NGRHYSRSYSPEPRRRTLRNYSHSPS 297

Query: 188 WESRRSYSRSTSPERSRRSGS--YSRSVSPE-PRSSRSRSRSHTPRRHDYKLYRPQKRGY 247
            ESRRSYSRS SPERSRRSGS  YS S+SPE  RS RSRS SHTPRRH+      +KRGY
Sbjct: 298 RESRRSYSRSISPERSRRSGSSVYSSSISPERGRSLRSRSCSHTPRRHE----STRKRGY 357

Query: 248 SGGSRSRSQSVVSRSVSPA 254
           S  SRSRSQSV SRSVSPA
Sbjct: 358 SSRSRSRSQSVTSRSVSPA 369

[Close]

BLAST of Lcy10g001050 vs. ExPASy TrEMBL
Match: A0A6J1D9V3 (serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018970 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.7e-74
Identity = 201/262 (76.72%), Postives = 207/262 (79.01%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSH 67
           ARRRRGRTPTPGRYLGLRTV VRRRS SYS R SPSYSPY RSSS SS YSSERSRSRSH
Sbjct: 119 ARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRSH 178

Query: 68  SPNQHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSR--SRSPY-RSPARRRDRSYSP 127
           SP +H RSYGSPY +RSYSPYSRRRYDSPYYR HRSYSR  SRSPY RSP RR DRSYS 
Sbjct: 179 SPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYSS 238

Query: 128 -YDYYSPDP-YYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPSWE-- 187
            YDYYS D  YYRRHRYRSVSRSVSPKARIS R YSRSYSPRP RRTLRS SRSPS    
Sbjct: 239 YYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRP-RRTLRSYSRSPSSVRI 298

Query: 188 -------SRRSYSRSTSPERSRRSGSYSRSVSPEPRSSRSRSRSHTPRRHDYKLYRPQ-K 247
                    RSYSRS SPERS+RSGSY    S   R SRSRSRSHT RRH +K+Y    K
Sbjct: 299 YSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSR-SRSRSRSHTFRRHSHKVYENSGK 358

Query: 248 RGYSGGSRSRSQSVVSRSVSPA 254
           R YSG SRSRS+SVVSRSVSPA
Sbjct: 359 REYSGXSRSRSRSVVSRSVSPA 378

[Close]

BLAST of Lcy10g001050 vs. ExPASy TrEMBL
Match: A0A6J1DD22 (serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018970 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.7e-74
Identity = 201/262 (76.72%), Postives = 207/262 (79.01%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSH 67
           ARRRRGRTPTPGRYLGLRTV VRRRS SYS R SPSYSPY RSSS SS YSSERSRSRSH
Sbjct: 52  ARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRSH 111

Query: 68  SPNQHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSR--SRSPY-RSPARRRDRSYSP 127
           SP +H RSYGSPY +RSYSPYSRRRYDSPYYR HRSYSR  SRSPY RSP RR DRSYS 
Sbjct: 112 SPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYSS 171

Query: 128 -YDYYSPDP-YYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPSWE-- 187
            YDYYS D  YYRRHRYRSVSRSVSPKARIS R YSRSYSPRP RRTLRS SRSPS    
Sbjct: 172 YYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRP-RRTLRSYSRSPSSVRI 231

Query: 188 -------SRRSYSRSTSPERSRRSGSYSRSVSPEPRSSRSRSRSHTPRRHDYKLYRPQ-K 247
                    RSYSRS SPERS+RSGSY    S   R SRSRSRSHT RRH +K+Y    K
Sbjct: 232 YSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSR-SRSRSRSHTFRRHSHKVYENSGK 291

Query: 248 RGYSGGSRSRSQSVVSRSVSPA 254
           R YSG SRSRS+SVVSRSVSPA
Sbjct: 292 REYSGXSRSRSRSVVSRSVSPA 311

[Close]

BLAST of Lcy10g001050 vs. ExPASy TrEMBL
Match: A0A6J1GBJ2 (serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 6.7e-73
Identity = 190/248 (76.61%), Postives = 198/248 (79.84%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSH 67
           ARRRRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S SS+YSS+RSRSRSH
Sbjct: 118 ARRRRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSH 177

Query: 68  SPNQHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSRSRSP-YRSPARRRDRSYSPYD 127
           SPN+  RS  SPYRYRSYSPYSRRRYDSPYYR HRSYSRS SP  RSP RRRDRSYSPYD
Sbjct: 178 SPNRRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSPYD 237

Query: 128 YYSPDPYYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPSWESRRSYS 187
           Y SPD YYRRHR RSVSRSVSPKAR+SSRRYS SYSPR RR   RS SRS      RSYS
Sbjct: 238 YCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSPRHRRSASRSHSRS------RSYS 297

Query: 188 RSTSPERSRRSGSYSRSVSPEPRSSRSRSRSHTPRRHDYKLYRPQKRGYSGGSRSRSQSV 247
           RS SPERSRR  S+S S+SPE RSSRSRSRSHTPR H       ++ GYSGG    S SV
Sbjct: 298 RSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHH-------KRGGYSGG----SGSV 348

Query: 248 VSRSVSPA 254
            SRSVSPA
Sbjct: 358 ASRSVSPA 348

[Close]

BLAST of Lcy10g001050 vs. ExPASy TrEMBL
Match: A0A6J1GAS3 (serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 1.3e-71
Identity = 188/248 (75.81%), Postives = 196/248 (79.03%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSH 67
           ARRRRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S SS+YSS+RSRSRSH
Sbjct: 118 ARRRRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSH 177

Query: 68  SPNQHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSRSRSP-YRSPARRRDRSYSPYD 127
           SPN+  RS  SPYRYRSYSPYSRRRYDSPYYR HRSYSRS SP  R P RR DRSYSPYD
Sbjct: 178 SPNRRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRLPTRRHDRSYSPYD 237

Query: 128 YYSPDPYYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPSWESRRSYS 187
           Y SPD YYRRHR RSVSRSVSPKAR+SSRRYS SYSPR RR   RS SRS      RSYS
Sbjct: 238 YCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSPRHRRSASRSHSRS------RSYS 297

Query: 188 RSTSPERSRRSGSYSRSVSPEPRSSRSRSRSHTPRRHDYKLYRPQKRGYSGGSRSRSQSV 247
           RS SPERSRR  S+S S+SPE RSSRSRSRSHTPR H       ++ GYSGG    S SV
Sbjct: 298 RSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHH-------KRGGYSGG----SGSV 348

Query: 248 VSRSVSPA 254
            SRSVSPA
Sbjct: 358 ASRSVSPA 348

[Close]

BLAST of Lcy10g001050 vs. NCBI nr
Match: XP_038894517.1 (serine/arginine-rich splicing factor SR45a isoform X1 [Benincasa hispida])

HSP 1 Score: 307.0 bits (785), Expect = 1.5e-79
Identity = 203/250 (81.20%), Postives = 212/250 (84.80%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSH 67
           ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY RSSS S+ YSS RSRSRSH
Sbjct: 118 ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTDYSSNRSRSRSH 177

Query: 68  SPNQHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSRSRSPYRSPARRRDRSYSPYDY 127
           S ++H RSYGS Y YRSYS YSRRRYDSP  R H+SYSRSRSPYR   R RDRSYSPYD 
Sbjct: 178 SVDRHRRSYGSSYNYRSYS-YSRRRYDSPDCRRHKSYSRSRSPYR--RRHRDRSYSPYDD 237

Query: 128 YSPDPYYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTL-RSCSRSPSWESRRSYS 187
           YSPDPYYRRHRYRSVSRS+SPKARISSR YSRSYSP PRRRTL RS SRS SWESRRSYS
Sbjct: 238 YSPDPYYRRHRYRSVSRSLSPKARISSRHYSRSYSPEPRRRTLRRSYSRSLSWESRRSYS 297

Query: 188 RSTSPERSRRS-GSYSRSVSPE-PRSSRSRSRSHTPRRHDYKLYRPQKRGYSGGSRSRSQ 247
           RS SPERSRRS  SYS SVSPE  RSSRSRSRS+T RRH YKLY  ++R     SRSRS+
Sbjct: 298 RSISPERSRRSWSSYSYSVSPERSRSSRSRSRSNTSRRHSYKLYESRRR-----SRSRSR 357

Query: 248 SVVSRSVSPA 254
           SV SRSVSPA
Sbjct: 358 SVTSRSVSPA 359

[Close]

BLAST of Lcy10g001050 vs. NCBI nr
Match: XP_008457405.1 (PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo])

HSP 1 Score: 304.3 bits (778), Expect = 9.8e-79
Identity = 202/259 (77.99%), Postives = 213/259 (82.24%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSH 67
           ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY RSSS S+HYSS+RSRSRS 
Sbjct: 118 ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSR 177

Query: 68  SPNQHGRSYGSPYRYRSY--------SPYSRRRYDSP-YYRHHRSYSRSRSPYRSPARRR 127
           S N+H RSYGSPY  RSY        SPY RRRYDSP YYRHHRSYSRS SPYR  +  R
Sbjct: 178 SINRHRRSYGSPYHRRSYSYSRRRYDSPYYRRRYDSPDYYRHHRSYSRSSSPYRRWS--R 237

Query: 128 DRSYSPYDYYSPDPYYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPS 187
           DRSYSPYDYYSPDPYYRRHRYRSVSRS+SPK+R + R YSRSYSP PRRRTLR+ S SPS
Sbjct: 238 DRSYSPYDYYSPDPYYRRHRYRSVSRSLSPKSR-NGRHYSRSYSPEPRRRTLRNYSHSPS 297

Query: 188 WESRRSYSRSTSPERSRRSGS--YSRSVSPE-PRSSRSRSRSHTPRRHDYKLYRPQKRGY 247
            ESRRSYSRS SPERSRRSGS  YS S+SPE  RS RSRS SHTPRRH+      +KRGY
Sbjct: 298 RESRRSYSRSISPERSRRSGSSVYSSSISPERGRSLRSRSCSHTPRRHE----STRKRGY 357

Query: 248 SGGSRSRSQSVVSRSVSPA 254
           S  SRSRSQSV SRSVSPA
Sbjct: 358 SSRSRSRSQSVTSRSVSPA 369

[Close]

BLAST of Lcy10g001050 vs. NCBI nr
Match: XP_022150941.1 (serine/arginine-rich splicing factor SR45a-like isoform X2 [Momordica charantia])

HSP 1 Score: 288.5 bits (737), Expect = 5.6e-74
Identity = 201/262 (76.72%), Postives = 207/262 (79.01%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSH 67
           ARRRRGRTPTPGRYLGLRTV VRRRS SYS R SPSYSPY RSSS SS YSSERSRSRSH
Sbjct: 52  ARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRSH 111

Query: 68  SPNQHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSR--SRSPY-RSPARRRDRSYSP 127
           SP +H RSYGSPY +RSYSPYSRRRYDSPYYR HRSYSR  SRSPY RSP RR DRSYS 
Sbjct: 112 SPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYSS 171

Query: 128 -YDYYSPDP-YYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPSWE-- 187
            YDYYS D  YYRRHRYRSVSRSVSPKARIS R YSRSYSPRP RRTLRS SRSPS    
Sbjct: 172 YYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRP-RRTLRSYSRSPSSVRI 231

Query: 188 -------SRRSYSRSTSPERSRRSGSYSRSVSPEPRSSRSRSRSHTPRRHDYKLYRPQ-K 247
                    RSYSRS SPERS+RSGSY    S   R SRSRSRSHT RRH +K+Y    K
Sbjct: 232 YSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSR-SRSRSRSHTFRRHSHKVYENSGK 291

Query: 248 RGYSGGSRSRSQSVVSRSVSPA 254
           R YSG SRSRS+SVVSRSVSPA
Sbjct: 292 REYSGXSRSRSRSVVSRSVSPA 311

[Close]

BLAST of Lcy10g001050 vs. NCBI nr
Match: XP_022150940.1 (serine/arginine-rich splicing factor SR45a-like isoform X1 [Momordica charantia])

HSP 1 Score: 288.5 bits (737), Expect = 5.6e-74
Identity = 201/262 (76.72%), Postives = 207/262 (79.01%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSH 67
           ARRRRGRTPTPGRYLGLRTV VRRRS SYS R SPSYSPY RSSS SS YSSERSRSRSH
Sbjct: 119 ARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRSH 178

Query: 68  SPNQHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSR--SRSPY-RSPARRRDRSYSP 127
           SP +H RSYGSPY +RSYSPYSRRRYDSPYYR HRSYSR  SRSPY RSP RR DRSYS 
Sbjct: 179 SPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYSS 238

Query: 128 -YDYYSPDP-YYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPSWE-- 187
            YDYYS D  YYRRHRYRSVSRSVSPKARIS R YSRSYSPRP RRTLRS SRSPS    
Sbjct: 239 YYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRP-RRTLRSYSRSPSSVRI 298

Query: 188 -------SRRSYSRSTSPERSRRSGSYSRSVSPEPRSSRSRSRSHTPRRHDYKLYRPQ-K 247
                    RSYSRS SPERS+RSGSY    S   R SRSRSRSHT RRH +K+Y    K
Sbjct: 299 YSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSR-SRSRSRSHTFRRHSHKVYENSGK 358

Query: 248 RGYSGGSRSRSQSVVSRSVSPA 254
           R YSG SRSRS+SVVSRSVSPA
Sbjct: 359 REYSGXSRSRSRSVVSRSVSPA 378

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BLAST of Lcy10g001050 vs. NCBI nr
Match: KAG6607292.1 (Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 285.8 bits (730), Expect = 3.6e-73
Identity = 189/248 (76.21%), Postives = 197/248 (79.44%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSH 67
           ARRRRGRTPTPGRY GLRTV VRRRSRSYSSRRSPSYSPY RS S SS+YSS+RSRSRSH
Sbjct: 150 ARRRRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSH 209

Query: 68  SPNQHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSRSRSP-YRSPARRRDRSYSPYD 127
           SPN+  RS  SPY YRSYSPYS RRYDSPYYR HRSYSRS SP  R P RR DRSYSPYD
Sbjct: 210 SPNRRRRSNDSPYHYRSYSPYSGRRYDSPYYRRHRSYSRSHSPCSRLPTRRHDRSYSPYD 269

Query: 128 YYSPDPYYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPSWESRRSYS 187
           Y SPDPYYRRHR RSVSRSVSPKAR+SSRRYSRSYSPR RR   RS SRS      RSYS
Sbjct: 270 YCSPDPYYRRHRDRSVSRSVSPKARVSSRRYSRSYSPRHRRSASRSYSRS------RSYS 329

Query: 188 RSTSPERSRRSGSYSRSVSPEPRSSRSRSRSHTPRRHDYKLYRPQKRGYSGGSRSRSQSV 247
           RS SPERSRR  S+S S+SPE RSSRSRSRSHTPR H       ++ GYSGG    S SV
Sbjct: 330 RSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHH-------KRGGYSGG----SGSV 380

Query: 248 VSRSVSPA 254
            SRSVSPA
Sbjct: 390 ASRSVSPA 380

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BLAST of Lcy10g001050 vs. TAIR 10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-19
Identity = 131/270 (48.52%), Postives = 143/270 (52.96%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRSSSHSSHYSSERSRSRSHS 67
           ARRRRGRTPTPG+YLGLRT   R +S SYS RRS S S  RS S+SS       R RS+S
Sbjct: 151 ARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSCSRSRSRSYSS------DRGRSYS 210

Query: 68  PNQHGRSYGSPYRYRSYSP-YSRRRYDSPYYRHHRSYSRSRSPYRSPARRRDRSYSPYDY 127
           P     SYG   R  SYSP Y RRR+ SP        SRS SP     RRRDRSYSPY  
Sbjct: 211 P-----SYGRRGRSSSYSPFYRRRRFYSP--------SRSPSPDDRYNRRRDRSYSPY-- 270

Query: 128 YSPDPYYRRHRYRSVSRSVSPKAR--ISSRRY---SRSYSPRPRRRTLRSCSRSPSWESR 187
                Y RR R RS SR+   + R     RRY   SRSYSPR R R  RSC  SP +  R
Sbjct: 271 -----YRRRDRSRSYSRNCRARDRSPYYMRRYRSRSRSYSPRYRARD-RSC--SPYYRGR 330

Query: 188 -RSYS-------RSTSPERS--RRSGSYSRSVSP---------EPRSSRSRSRSHTPRRH 247
            RSYS       RS SPE    RR  S S SVSP          PR  R  SRS + RRH
Sbjct: 331 DRSYSPHYQGRDRSYSPESRYYRRHRSVSGSVSPGGRSMSRSISPRKGRKESRSKS-RRH 382

Query: 248 DYKLYRPQKRGYSGGSRSRSQSVVSRSVSP 253
           D    R     +S  +RS +    SRSVSP
Sbjct: 391 D----RQSSMCHSRSARSST----SRSVSP 382

The following BLAST results are available for this feature:

BLAST of Lcy10g001050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	2.7e-18	48.52	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]

BLAST of Lcy10g001050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C508	4.8e-79	77.99	serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1D9V3	2.7e-74	76.72	serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Momordica charanti...	[more]
A0A6J1DD22	2.7e-74	76.72	serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Momordica charanti...	[more]
A0A6J1GBJ2	6.7e-73	76.61	serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata...	[more]
A0A6J1GAS3	1.3e-71	75.81	serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita moschata...	[more]

BLAST of Lcy10g001050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894517.1	1.5e-79	81.20	serine/arginine-rich splicing factor SR45a isoform X1 [Benincasa hispida]	[more]
XP_008457405.1	9.8e-79	77.99	PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo]	[more]
XP_022150941.1	5.6e-74	76.72	serine/arginine-rich splicing factor SR45a-like isoform X2 [Momordica charantia]	[more]
XP_022150940.1	5.6e-74	76.72	serine/arginine-rich splicing factor SR45a-like isoform X1 [Momordica charantia]	[more]
KAG6607292.1	3.6e-73	76.21	Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Lcy10g001050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07350.1	1.9e-19	48.52	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..253
None	No IPR available	PANTHER	PTHR15241:SF351	SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1	coord: 8..149
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 8..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g001050.1	Lcy10g001050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding