Lcy10g000720 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g000720
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein PSY1-like
Location	Chr10: 838001 .. 840417 (+)
RNA-Seq Expression	Lcy10g000720
Synteny	Lcy10g000720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCATTCATAGCTTCTTCATTTGTGTATTGAAATACCACAAAGTGAAGATTAATGGCTTCTCGACTTTCCCTTTACTTCTCTCTTCTCTTTGTCCTCTTCGCCATTGCAGCTTCTGCAGCTCGATATACACCTGCAAATCCAACTGCAAGCAAAGAGAGTAAGAACAAACCCTTTCCTTCTTTCGTCTTCGTTTCTCTTCGTTCGATATGTTGTAATTCATCCGCTTAAACTTACCTTAGTTTGACGTGGTATCAGAGTAGAAGATTTTGTGTTCTTTTTTATTCTTCGTCGTCGTTTTGTGTGATATGGTTAATTACTTTCGAGGGAGAACATCTCTTGTTGCCATTACTGAACTTTCGACAATTAGGAGAGGGAAGAGAGACTTTTTCTTTTCTCAAAAGAAAGTGGACGTATGTGAAAAACTTAGTGATGGACAAATAGGAATTTTTTGCTGCTCAATTAGTAGGAAAGTATTTTTCATTTTCCAGTCCACTAGTGGGGTGGAGTATCGAGAGTTGATTAAACATGGGTAACTTATCAGGTTAGACTCTCGTTGGGGTCGGTTTATTAATTGTTCAAACATGATGTCAAGGTAGGAGTTTGAAGTTTTGAACTTATGCAATGTCATTTCTTTACCATCTTATATAATAGCTAACTTGTTATTGTGTAGACAAATGAGAGAGTGTTACGAATATAAACAAATGATAGTTCAACATGATACCTCAATAGTATATATGAGTTCAAACATCTACTCGTCATTTCTTTCATGTTTCCTATTTCGTATAATAGCTAAACGAAGCTATGTATCAGAATGATTAAATATCCCCTTTATCTTATAAGGTTTATTACCCTTAGTTTAATAAGTCTAACTTGTCGGACTTCGAATAAATCTCAAGTTCACAAGTGAAGGGTAGTATCAAGGATATATATCGTTTTTAAATATGTCGTAACCTATCAACTTCTTTAGTCTAAGGAGTGATTAAGTATTTTTAGTCAATCTTAATAGCTTCTCTTAACTAAAATTACTTCAATTTCCAAAACGATTTATTTTCAGGGAATGGAGGAATGATGGCGATGAATGTGCATTTTGCAGAACGAACATCTGAAGATGACAATACGATTCATCGTCTCTTAGCAGGTGAATCTGAACCCATTTTTCTCCCTTTTGATCTCAAAAACAGATGGATTATATTTTGTATTCAGATTTTGAAACTAATTTCTTATGGATTATAAAATGTTGTAGGACATGAAGAGATGACTGGCTTACAAGACTATGCTGATACTCGTGCCAATCATAGACATGATCCCCACCATCCTCTTGCTGTCCAGGGTAAGCCAATGGCAACGATCTCGAAACGATTAGTACTACGCAGTTGAATATATGAGAAAGAAATTAAAATTTGGGTTTCGAGCTTTTGAACCTATGTTCATGAATATATATATATTTTTAGTAACATTTCGTTTGATGATTCCATTTTTTTTAGTATAACAATTCGTATATGATTTTAACACACCATGTCCTATGTTTTTTTATCCCAAAGAGTTTAGGAATACTTATCAACTTTGTCAAATTTTTGTACATTTTAAGAAAAATCTTGAGTCACATAAACATTTCTAATTTGATGTATGTGTGGTAGTTTAGTACATAAGTCCACTTAATGCTACACAAATGTTACATGGTTGGAAAGTTATTACTTCAATATTAATTAATACTTATCCATTGGATAACAACCCTCCTATTTAATAATTAATTGTTTGATCATTAAGTTTGACTTTTACTTGCCAACAAGAGCTTAGCTCAATTGGCATTAAGTTGTACTGATAACCACAAGGTCTGTGGTTCGAATCCCTCTCCTCACATATTGTCAATTTTTTTTTTTTTTGACATTTATTTATGCTCAATAGAACAATCTTATAGTCAAGTTTCATTTAGTTAGATATATATTTTTTTTGGTTATGCCTCAATTACCTTTTGAGAGGTCTATACGCCATGACTTGTTTAAACTAGTATAATATATATTGACTTGTTTTAAATATTATATGGTTTTTATATCCCACAATTTAAATATATATCAAACCACTGTAATTAAAAACTTTATTGTTGTTGTTCATAATATTGTTTACTTATTTTTGTAGGGAATGACAAGGAGTTGGATGGTTAATGAGAAAAGAATGCTAATGAAAAAGGGCATTTTGGTCAAAGTCAATGGTGGTGGAGTTTGTGTGTTGAGATTAATACAAGAATAAAAATTTTCACACTATGATCTTTTTGCATCCCTTGTTTTTATCTATGTATTAAAGTTGAAAAGGATATTGTGAGTGATGAAGTTCAAATTACCCATTTTACAAGGATATTTCACTCTATAATTTATATTTATAGAGCCAAATGTTATGAAAAAGAAATGATATTATTAAA

mRNA sequence

TCCATTCATAGCTTCTTCATTTGTGTATTGAAATACCACAAAGTGAAGATTAATGGCTTCTCGACTTTCCCTTTACTTCTCTCTTCTCTTTGTCCTCTTCGCCATTGCAGCTTCTGCAGCTCGATATACACCTGCAAATCCAACTGCAAGCAAAGAGAGGAATGGAGGAATGATGGCGATGAATGTGCATTTTGCAGAACGAACATCTGAAGATGACAATACGATTCATCGTCTCTTAGCAGGACATGAAGAGATGACTGGCTTACAAGACTATGCTGATACTCGTGCCAATCATAGACATGATCCCCACCATCCTCTTGCTGTCCAGGGGAATGACAAGGAGTTGGATGGTTAATGAGAAAAGAATGCTAATGAAAAAGGGCATTTTGGTCAAAGTCAATGGTGGTGGAGTTTGTGTGTTGAGATTAATACAAGAATAAAAATTTTCACACTATGATCTTTTTGCATCCCTTGTTTTTATCTATGTATTAAAGTTGAAAAGGATATTGTGAGTGATGAAGTTCAAATTACCCATTTTACAAGGATATTTCACTCTATAATTTATATTTATAGAGCCAAATGTTATGAAAAAGAAATGATATTATTAAA

Coding sequence (CDS)

ATGGCTTCTCGACTTTCCCTTTACTTCTCTCTTCTCTTTGTCCTCTTCGCCATTGCAGCTTCTGCAGCTCGATATACACCTGCAAATCCAACTGCAAGCAAAGAGAGGAATGGAGGAATGATGGCGATGAATGTGCATTTTGCAGAACGAACATCTGAAGATGACAATACGATTCATCGTCTCTTAGCAGGACATGAAGAGATGACTGGCTTACAAGACTATGCTGATACTCGTGCCAATCATAGACATGATCCCCACCATCCTCTTGCTGTCCAGGGGAATGACAAGGAGTTGGATGGTTAA

Protein sequence

MASRLSLYFSLLFVLFAIAASAARYTPANPTASKERNGGMMAMNVHFAERTSEDDNTIHRLLAGHEEMTGLQDYADTRANHRHDPHHPLAVQGNDKELDG

Homology

[Close]

BLAST of Lcy10g000720 vs. ExPASy TrEMBL
Match: A0A6J1D9T4 (uncharacterized protein LOC111018956 OS=Momordica charantia OX=3673 GN=LOC111018956 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.9e-23
Identity = 67/105 (63.81%), Postives = 81/105 (77.14%), Query Frame = 0


Query: 1   MASRLSLYFSLLFVLFA---IAASAARYTPANPTASK-ERNGGMMAMNVHFAERTSEDDN 60
           MASRLSLYFSLL +L A   I +SAAR+ PA  T+SK  RNGGM+ ++  FA+   ED++
Sbjct: 1   MASRLSLYFSLLILLLATASIVSSAARHAPA--TSSKLARNGGMVEIHERFAKSRVEDNS 60

Query: 61  TI-HRLLAGHEEMTGLQDYADTRANHRHDPHHPLAVQGNDKELDG 101
            + HRLL GHEEM GL DY DT ANH+HDPHHPLAV+GN+KELDG
Sbjct: 61  MVHHRLLTGHEEMIGLHDYGDTHANHKHDPHHPLAVKGNNKELDG 103

[Close]

BLAST of Lcy10g000720 vs. ExPASy TrEMBL
Match: A0A6J1K9X5 (uncharacterized protein LOC111492989 OS=Cucurbita maxima OX=3661 GN=LOC111492989 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.4e-11
Identity = 48/103 (46.60%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 1   MASRLSLYFSLLFVLFA----IAASAARYTPANPTASKERNGGMMAMNVHFAERTSEDDN 60
           MAS+ SLYFSLLF L +    +AA  AR  PANP +S ER                    
Sbjct: 1   MASQSSLYFSLLFFLLSTAAIVAAFEARNIPANPISSTER-------------------- 60

Query: 61  TIHRLLAGHEEMTGLQDYADTRANHRHDPHHPLAVQGNDKELD 100
                   H+EM GL+DY D RANHRH+PHHPL V+G  KELD
Sbjct: 61  --------HDEMIGLRDYGDARANHRHEPHHPLGVEGYKKELD 75

[Close]

BLAST of Lcy10g000720 vs. ExPASy TrEMBL
Match: A0A0A0LXN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532270 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 48/101 (47.52%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 4   RLSLYFSLLFVLF---AIAASAARYTPANPTASKERNGGMMAMNVHFAERTSEDDNTIHR 63
           RLS YFS L +L    A+ ASAAR+ PA P +S +RN                       
Sbjct: 10  RLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRN----------------------- 69

Query: 64  LLAGHEEMTGLQDYADTRANHRHDPHHPLAV-QGNDKELDG 101
                +EM GLQDY D RANHRHDPHHPL+V +GN+KELDG
Sbjct: 70  ----DKEMIGLQDYGDARANHRHDPHHPLSVNKGNNKELDG 83

[Close]

BLAST of Lcy10g000720 vs. ExPASy TrEMBL
Match: A0A1S3C5B4 (protein PSY1-like OS=Cucumis melo OX=3656 GN=LOC103497069 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.2e-10
Identity = 48/101 (47.52%), Postives = 53/101 (52.48%), Query Frame = 0


Query: 4   RLSLYFSLLFVLF---AIAASAARYTPANPTASKERNGGMMAMNVHFAERTSEDDNTIHR 63
           RLS YFS L +L    A+ ASAAR+ P  P +S ERN                       
Sbjct: 9   RLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERN----------------------- 68

Query: 64  LLAGHEEMTGLQDYADTRANHRHDPHHPLAV-QGNDKELDG 101
                E M GLQDY D RANHRHDPHHPL V +GN KELDG
Sbjct: 69  ----DEGMIGLQDYGDARANHRHDPHHPLTVNKGNKKELDG 82

[Close]

BLAST of Lcy10g000720 vs. NCBI nr
Match: XP_022150920.1 (uncharacterized protein LOC111018956 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 4.0e-23
Identity = 67/105 (63.81%), Postives = 81/105 (77.14%), Query Frame = 0


Query: 1   MASRLSLYFSLLFVLFA---IAASAARYTPANPTASK-ERNGGMMAMNVHFAERTSEDDN 60
           MASRLSLYFSLL +L A   I +SAAR+ PA  T+SK  RNGGM+ ++  FA+   ED++
Sbjct: 1   MASRLSLYFSLLILLLATASIVSSAARHAPA--TSSKLARNGGMVEIHERFAKSRVEDNS 60

Query: 61  TI-HRLLAGHEEMTGLQDYADTRANHRHDPHHPLAVQGNDKELDG 101
            + HRLL GHEEM GL DY DT ANH+HDPHHPLAV+GN+KELDG
Sbjct: 61  MVHHRLLTGHEEMIGLHDYGDTHANHKHDPHHPLAVKGNNKELDG 103

[Close]

BLAST of Lcy10g000720 vs. NCBI nr
Match: KAG6607316.1 (hypothetical protein SDJN03_00658, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 4.5e-11
Identity = 50/103 (48.54%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 1   MASRLSLYFSLLFVLFAIAA----SAARYTPANPTASKERNGGMMAMNVHFAERTSEDDN 60
           MASR SLYFSLLF L + AA    S AR  PA+P AS ER                    
Sbjct: 1   MASRSSLYFSLLFFLLSTAAIVAPSEARNIPASPIASTER-------------------- 60

Query: 61  TIHRLLAGHEEMTGLQDYADTRANHRHDPHHPLAVQGNDKELD 100
                   H+EM GL+DY D RANHRH+PHHPL V+G  KELD
Sbjct: 61  --------HDEMIGLRDYGDARANHRHEPHHPLGVEGYKKELD 75

[Close]

BLAST of Lcy10g000720 vs. NCBI nr
Match: XP_022998316.1 (uncharacterized protein LOC111492989 [Cucurbita maxima])

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 48/103 (46.60%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 1   MASRLSLYFSLLFVLFA----IAASAARYTPANPTASKERNGGMMAMNVHFAERTSEDDN 60
           MAS+ SLYFSLLF L +    +AA  AR  PANP +S ER                    
Sbjct: 1   MASQSSLYFSLLFFLLSTAAIVAAFEARNIPANPISSTER-------------------- 60

Query: 61  TIHRLLAGHEEMTGLQDYADTRANHRHDPHHPLAVQGNDKELD 100
                   H+EM GL+DY D RANHRH+PHHPL V+G  KELD
Sbjct: 61  --------HDEMIGLRDYGDARANHRHEPHHPLGVEGYKKELD 75

[Close]

BLAST of Lcy10g000720 vs. NCBI nr
Match: KGN65819.1 (hypothetical protein Csa_023229 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-10
Identity = 48/101 (47.52%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 4   RLSLYFSLLFVLF---AIAASAARYTPANPTASKERNGGMMAMNVHFAERTSEDDNTIHR 63
           RLS YFS L +L    A+ ASAAR+ PA P +S +RN                       
Sbjct: 10  RLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRN----------------------- 69

Query: 64  LLAGHEEMTGLQDYADTRANHRHDPHHPLAV-QGNDKELDG 101
                +EM GLQDY D RANHRHDPHHPL+V +GN+KELDG
Sbjct: 70  ----DKEMIGLQDYGDARANHRHDPHHPLSVNKGNNKELDG 83

[Close]

BLAST of Lcy10g000720 vs. NCBI nr
Match: XP_008457363.1 (PREDICTED: protein PSY1-like [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-09
Identity = 48/101 (47.52%), Postives = 53/101 (52.48%), Query Frame = 0


Query: 4   RLSLYFSLLFVLF---AIAASAARYTPANPTASKERNGGMMAMNVHFAERTSEDDNTIHR 63
           RLS YFS L +L    A+ ASAAR+ P  P +S ERN                       
Sbjct: 9   RLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERN----------------------- 68

Query: 64  LLAGHEEMTGLQDYADTRANHRHDPHHPLAV-QGNDKELDG 101
                E M GLQDY D RANHRHDPHHPL V +GN KELDG
Sbjct: 69  ----DEGMIGLQDYGDARANHRHDPHHPLTVNKGNKKELDG 82

The following BLAST results are available for this feature:

BLAST of Lcy10g000720 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy10g000720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9T4	1.9e-23	63.81	uncharacterized protein LOC111018956 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1K9X5	6.4e-11	46.60	uncharacterized protein LOC111492989 OS=Cucurbita maxima OX=3661 GN=LOC111492989...	[more]
A0A0A0LXN0	1.1e-10	47.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532270 PE=4 SV=1	[more]
A0A1S3C5B4	9.2e-10	47.52	protein PSY1-like OS=Cucumis melo OX=3656 GN=LOC103497069 PE=4 SV=1	[more]

BLAST of Lcy10g000720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150920.1	4.0e-23	63.81	uncharacterized protein LOC111018956 [Momordica charantia]	[more]
KAG6607316.1	4.5e-11	48.54	hypothetical protein SDJN03_00658, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022998316.1	1.3e-10	46.60	uncharacterized protein LOC111492989 [Cucurbita maxima]	[more]
KGN65819.1	2.3e-10	47.52	hypothetical protein Csa_023229 [Cucumis sativus]	[more]
XP_008457363.1	1.9e-09	47.52	PREDICTED: protein PSY1-like [Cucumis melo]	[more]

BLAST of Lcy10g000720 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g000720.1	Lcy10g000720.1	mRNA