Lcy10g000310 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g000310
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	U2 small nuclear ribonucleoprotein B
Location	Chr10: 395000 .. 398866 (+)
RNA-Seq Expression	Lcy10g000310
Synteny	Lcy10g000310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTCCTCCTGCACATTTCGAAAACCAGATTTCTGTGTTGCTCCGTCATTTCTCTGTAGGCCGAAGGCGCTGAACGTGAACCACCATGTTATCGGGGGATATACCGCCGAATCAGACCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTGACTCACTCTTAGCTTTTCGCTTAAACCTTACTTTATCCCTTGTGTAAATGTGTTTTCTTCTGTTCAGTAAGTAGTTAGCTTAGGATAATTGAAGTGATCTGCGGGGCATTTTATTATTATCATTTCGCCTTTGGCTCTCAAAATTCATGCTACTGTCGCTCTCCGGGGGGGGGGGGGGGGGGAGCGTTACTTGGGCGAAATTTGGTTTGTTTTTGTTACAGTTCTAATATTTCTGATGATGCTACACGGTAATTACTCGAGGATGTAGAACTTTCATAGTTGGCATTTGGTTTTTAGGGTGAAGGAGCTGATAGTGGTAGCTTGAAATTTTAGTTCGGATATGGAAACAGCTACTTGCTTTACCCATCCCGTAGCATTTGGGGTTTTGTTTACTATATCGTTTGCAAAGACCCGTTCGATAACTATTTGGTTTTAATAGAGGGTTGAGAGGCTGAGGCTGGGGATACGCTGCTGGTGCAAAAGTTTGGGTGTAGGGATTTTGAGTGGGAAACAGATTGGGTAAAGCTTGAGGTCGAGGAAACTGAGTAGGATAAAACGGCGGGGCATAAGCTTGCTGGTAAAATGGTTGAGGCTGAGAAATAATCGGAGGTTGCGGAGGTTGAGGCAATGAACGGAGCTGAGACTGAAGTTGCTGGGGCGGTGGGCGGGGCTGATTTTGGTGAGTATTGGGATTCAGAGGTTGATTTGGAGGTTCGGTAGTAGGATTTATCGGCTGGTTTAATGGGGTGACCACTGGAGTAACATTGGGAGAAGCTACTGGTGTGGTTGAAGAAGTTGAGGAGGATGAAGAAGATGATTCCCCAGTTGTCATTGAGAAGGAGCGAGTGGCTCTGATACCATATAAAGTAAGAAATCAGAGATGGATTACTGCTATTCAGAAAAGGCTATTGTTCATACTATTACAAGACCCAGAGCTAGGGTATAAAAACAGAGAAGAAGGACACTTGTCCCAAACCGAGAGGCTGGAGCAAAAAGACCAATACAGACATAAAGAACCAGATAAATATACCAAGAAATAAACCAGATAAATGACCCTCTATTAGGTTTTTGGTTTTTGAAAATTAAGCTTCTAAACACTACTTCCTATGAGTTTCTTGTTACCTACTCATGGCAGATGTTTTCTAAATTCAAGTCAAGTTTTGAGAACTTAAAAATGTAGATTTTAGAAACTTGTTTTTGATTTTGGAGTTTGATGAAGAATTCAAATCTTTCCTTGCAAAAGATGAAACTCATCCTAAAGAAGTTAGGAGGAAACAACTTAATTTTTATAAACCAACAACTTAAAACCAAATGATTATCAAACTTTGACAATATTGCATCACGTGTGGGGTGGGGGATTCCATCCTATGACTTCTTAGTGTTCGGATTTGATGGTATACTAATTTTCTCCTTTTGGACAGAATTGAAGAGGTCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGATGTTGTTGCCTTGAAGACACCAAGGCTTCGAGGGCAAGCATGGGTTGCATTCAGTGAAGTGACCGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGATAAACCTATGGTTGGTCTCTAGCTGATCACGTTTTATGAACTTGCTTTTCATAGTCTTTTTTGTGGCGTTTCATCTATAAGGACAGTTCTTGTGCACTTTGATGTTATTTGGGTAGCTGTGGATAGTTTTCTTGTCAACGGGATTGGATCCTGATTATGCTTCAATTCAATGAGTGTTATGTGGAGGGTGTCATGTGAATATCTATACACAATCATACTCAATATTGTGCCAGTTTAGCTGCTTTTAACCCCTGTCTATTGACATTTGTTCTGTCAATGCATGCCCATATTCATTTACTGCTTAAAATGTTGTCATCACTGGATCTTTGATATCGTGTAAACTGCACAAAGGAATTAGTTTCTCCTTCACCTAACCAGAGATGTGTCCATGATTCTGTTGGGAAGAAACGAGTTTTACAATTAATTTTTTTTTTAAATTAGTTATTTTTTTATTTCATCTTGAATTTTTTTGTACTCTTTTTTTGCTCATTCATACAATATTCTGATATTGAATATGTAGATGACTTTCTGTTGCCTATCTCAAAAACATCAAATGACTTTCTCTCTCTATATTTTTTGGCAGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGGTGATTGTAACTATATAAGTATACTCTTTCTAATCGTTTCCTTTAAAATTCGTTGGTGGACCTAATCTTGAAGTTGGCAGATGGACAGTTATAACTTTACCATGAGAAATATATGTTTTCTTAAACTGGTTGGACATAACCTTCCATTTTCTAATTGCATTGCTTTTTAAAAGATCATAAGGTTTTTAAACTGGTCTATGTTCCTTATTTTCTTTAATTTGCTTATTCAGCTGAAAGAAAGCGACGTGCTGAAGAAGCGCACCAATCTGTAATGCCCAATGGAACAACTGCTGAGAATGGAGGTGCAAATGTAAGTTTCTCTTCACTCTTATTTTATTTTTTTTGTGATCTGAAATGTTTATTTTTCTTCTTCATATGAGCTGTATCGTATTAATTGCTACTCTAGAAGTGGTCCTGAGCATAAATTGTATGAGTCTTTTTGGATGGCGTGGTTCTCTGGTTAATTGTTTTTTTCTTCTCATTTGTTTTGAAGACATTGATGTCTATTCCAATTAGATTTCACTTTAGTGCCCCTTAGACCGGGCCATATTAATATATATATTTTTTTCTTTTCATAATTACTTCTGCTAAGAAAGTCTGTTCATTGTGTGCAGCCCACATTCCGTCATGCAAATCCAAGTGCTCCAGAAGCTACTCCAAACAATATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTACTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCGAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAACTCGACCTTTGTTCTACTGTTAGTTTTATGTAACGCGCAGCAGGTTTATGTTAATTTCGGAGCATATAAATATGAATCGGGAGTTTTTATGTAAAGTTCAAATATCCTCCACCTCCTTGCGAGGATGAAAGAGAATGAAAGAAAGAAAACATTGGGAGGCAGCTCACTGATTCCAGAGGAGGATAAGGATATCAAACCAAGGGACTCGATGAGTTTTGCCCGCAGTGCGAATTCCAGTTTCCAGAGGTAGCAAGTATAGTGTTATGTTAGGTCGTCAAAAAGGAAACAGAAAGAACTATTGAAAGACCTTTTTGAACTGTGTTCATGTGTACTTGTAGTAGTGGAAAACTAGCTTTTGAAAAGAAAACTAGTAGCTGAAATTTAGGAGACAATGTTGATTACATTTTTGCATGAACATTTAGTCCTCGACAATGAAGTGTTGATAATCATTTCTGTCAAAGTCTTAGGGACAGTGCTCTTGGTGCGTGTATTTTCTTCCATTGGTCGATTATGAGCAAGATTTGACCTAAACTTAGTTTGAAAGTTGTGTCTTTT

mRNA sequence

CCTTCCTCCTGCACATTTCGAAAACCAGATTTCTGTGTTGCTCCGTCATTTCTCTGTAGGCCGAAGGCGCTGAACGTGAACCACCATGTTATCGGGGGATATACCGCCGAATCAGACCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAATTGAAGAGGTCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGATGTTGTTGCCTTGAAGACACCAAGGCTTCGAGGGCAAGCATGGGTTGCATTCAGTGAAGTGACCGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGATAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAGAAAGCGACGTGCTGAAGAAGCGCACCAATCTGTAATGCCCAATGGAACAACTGCTGAGAATGGAGGTGCAAATCCCACATTCCGTCATGCAAATCCAAGTGCTCCAGAAGCTACTCCAAACAATATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTACTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCGAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAACTCGACCTTTGTTCTACTGTTAGTTTTATGTAACGCGCAGCAGGTTTATGTTAATTTCGGAGCATATAAATATGAATCGGGAGTTTTTATGTAAAGTTCAAATATCCTCCACCTCCTTGCGAGGATGAAAGAGAATGAAAGAAAGAAAACATTGGGAGGCAGCTCACTGATTCCAGAGGAGGATAAGGATATCAAACCAAGGGACTCGATGAGTTTTGCCCGCAGTGCGAATTCCAGTTTCCAGAGGTAGCAAGTATAGTGTTATGTTAGGTCGTCAAAAAGGAAACAGAAAGAACTATTGAAAGACCTTTTTGAACTGTGTTCATGTGTACTTGTAGTAGTGGAAAACTAGCTTTTGAAAAGAAAACTAGTAGCTGAAATTTAGGAGACAATGTTGATTACATTTTTGCATGAACATTTAGTCCTCGACAATGAAGTGTTGATAATCATTTCTGTCAAAGTCTTAGGGACAGTGCTCTTGGTGCGTGTATTTTCTTCCATTGGTCGATTATGAGCAAGATTTGACCTAAACTTAGTTTGAAAGTTGTGTCTTTT

Coding sequence (CDS)

ATGTTATCGGGGGATATACCGCCGAATCAGACCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAATTGAAGAGGTCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGATGTTGTTGCCTTGAAGACACCAAGGCTTCGAGGGCAAGCATGGGTTGCATTCAGTGAAGTGACCGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGATAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAGAAAGCGACGTGCTGAAGAAGCGCACCAATCTGTAATGCCCAATGGAACAACTGCTGAGAATGGAGGTGCAAATCCCACATTCCGTCATGCAAATCCAAGTGCTCCAGAAGCTACTCCAAACAATATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTACTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCGAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Protein sequence

MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

Homology

[Close]

BLAST of Lcy10g000310 vs. ExPASy Swiss-Prot
Match: Q8H1S6 (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 7.1e-95
Identity = 179/232 (77.16%), Postives = 202/232 (87.07%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GSFVP+EKK KQEEK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 EEAHQSVMPNGTTAENGGANPTFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           EE  Q  MPNG T +NG   P F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Lcy10g000310 vs. ExPASy Swiss-Prot
Match: O22922 (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 5.3e-90
Identity = 170/235 (72.34%), Postives = 201/235 (85.53%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAA +AVRQMQNFPFYDKPMR+QYAK KSDC+AKA+G+FVP++KK+KQEEK ERKR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120

Query: 121 EEAHQSV---MPNGTTAENGGANPTFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVL 180
            +   +      NG +A NG   P+F+   PS  E   PNNILFI+NLPHET+SMMLQ+L
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQ---PSGQETMPPNNILFIQNLPHETTSMMLQLL 180

Query: 181 FQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           F+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 FEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Lcy10g000310 vs. ExPASy Swiss-Prot
Match: B8AM21 (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 2.5e-87
Identity = 174/233 (74.68%), Postives = 193/233 (82.83%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEK-AERKRR 120
           E+TAA+NA R +Q F FY K MR+QYAKTKSDC+A  DGS  P+EK+KKQEEK AE+KRR
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 121 AEEAHQSVMPNGTTAENGGANPTFRHANPS-APEATPNNILFIENLPHETSSMMLQVLFQ 180
           AEEA QS  PN     NG      R    S  P A PNNILFI+NLP ET+SMMLQ+LFQ
Sbjct: 121 AEEAQQS-GPNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of Lcy10g000310 vs. ExPASy Swiss-Prot
Match: Q10MR0 (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 5.5e-87
Identity = 173/233 (74.25%), Postives = 193/233 (82.83%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEK-AERKRR 120
           E+TAA+NA R +Q F FY K MR+QYAKT+SDC+A  DGS  P+EK+KKQEEK AE+KRR
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 121 AEEAHQSVMPNGTTAENGGANPTFRHANPS-APEATPNNILFIENLPHETSSMMLQVLFQ 180
           AEEA QS  PN     NG      R    S  P A PNNILFI+NLP ET+SMMLQ+LFQ
Sbjct: 121 AEEAQQS-GPNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of Lcy10g000310 vs. ExPASy Swiss-Prot
Match: Q39244 (U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 8.2e-67
Identity = 141/239 (59.00%), Postives = 177/239 (74.06%), Query Frame = 0


Query: 5   DIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTA 64
           ++ PNQTIYI NLNEKVK +ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 65  ASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH 124
           AS A+ +M NFPFYDK MRIQYAKTKSD VAKADG+FVPREK+K+ EEK   K++ ++ H
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132

Query: 125 QSV---MP-NGTTAENGGANPTFRHA------NPSAPE--ATPNNILFIENLPHETSSMM 184
            S    MP N       GA P            P+ PE  A PNNILF++NLPHET+ M+
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192

Query: 185 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M I++AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250

[Close]

BLAST of Lcy10g000310 vs. ExPASy TrEMBL
Match: A0A6J1KA04 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita maxima OX=3661 GN=LOC111493013 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.5e-119
Identity = 224/231 (96.97%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EEAHQSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQS MPNG TAENGG+N TFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Lcy10g000310 vs. ExPASy TrEMBL
Match: A0A6J1GC84 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita moschata OX=3662 GN=LOC111452834 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.5e-119
Identity = 224/231 (96.97%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EEAHQSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQS MPNG TAENGG+N TFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Lcy10g000310 vs. ExPASy TrEMBL
Match: A0A5D3BF51 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00310 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 3.3e-119
Identity = 223/231 (96.54%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADG+FVPREKKKKQEEKAE+KRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 EEAHQSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EEAHQS MPNGTT ENGG+N TFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Lcy10g000310 vs. ExPASy TrEMBL
Match: A0A1S3C564 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC103497024 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 3.3e-119
Identity = 223/231 (96.54%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADG+FVPREKKKKQEEKAE+KRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 EEAHQSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EEAHQS MPNGTT ENGG+N TFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Lcy10g000310 vs. ExPASy TrEMBL
Match: A0A0A0LPT7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 5.6e-119
Identity = 222/231 (96.10%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPREKKKKQEEKAE+KRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120

Query: 121 EEAHQSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQS MPNGTT ENGG+N TFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Lcy10g000310 vs. NCBI nr
Match: XP_022949507.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima] >KAG6607350.1 U2 small nuclear ribonucleoprotein B'', partial [Cucurbita argyrosperma subsp. sororia] >KAG7037025.1 U2 small nuclear ribonucleoprotein B'' [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 438.7 bits (1127), Expect = 3.1e-119
Identity = 224/231 (96.97%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EEAHQSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQS MPNG TAENGG+N TFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Lcy10g000310 vs. NCBI nr
Match: XP_008457301.1 (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo] >KAA0059982.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo var. makuwa] >TYJ97241.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 437.6 bits (1124), Expect = 6.8e-119
Identity = 223/231 (96.54%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADG+FVPREKKKKQEEKAE+KRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 EEAHQSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EEAHQS MPNGTT ENGG+N TFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Lcy10g000310 vs. NCBI nr
Match: XP_023525708.1 (U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023525709.1 U2 small nuclear ribonucleoprotein B'' 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 437.6 bits (1124), Expect = 6.8e-119
Identity = 223/231 (96.54%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EEAHQSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           +E HQS MPNG TAENGG+N TFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 DETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Lcy10g000310 vs. NCBI nr
Match: XP_004137370.1 (U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus] >KGN63915.1 hypothetical protein Csa_013411 [Cucumis sativus])

HSP 1 Score: 436.8 bits (1122), Expect = 1.2e-118
Identity = 222/231 (96.10%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPREKKKKQEEKAE+KRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120

Query: 121 EEAHQSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQS MPNGTT ENGG+N TFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Lcy10g000310 vs. NCBI nr
Match: XP_022154903.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Momordica charantia])

HSP 1 Score: 436.0 bits (1120), Expect = 2.0e-118
Identity = 221/231 (95.67%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIY+KNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYVKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSDCVAKADGSFVPREKKKKQEEKAERKRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120

Query: 121 EEAHQSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           E++HQS MPNGTT ENG +N TFRHANPSAPEA PNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EDSHQSAMPNGTTTENGSSNATFRHANPSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Lcy10g000310 vs. TAIR 10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 348.2 bits (892), Expect = 5.1e-96
Identity = 179/232 (77.16%), Postives = 202/232 (87.07%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GSFVP+EKK KQEEK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 EEAHQSVMPNGTTAENGGANPTFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           EE  Q  MPNG T +NG   P F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Lcy10g000310 vs. TAIR 10
Match: AT1G06960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 345.5 bits (885), Expect = 3.3e-95
Identity = 177/231 (76.62%), Postives = 199/231 (86.15%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GSFVP+EKK KQEEK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 EEAHQSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EE  Q  MPNG T +NG   P       + P   PNNILFI NLP ET+SMMLQ+LF+QY
Sbjct: 121 EETQQPSMPNGATTQNGMPPPFQPSGQDTMP---PNNILFIHNLPIETNSMMLQLLFEQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 PGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228

[Close]

BLAST of Lcy10g000310 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 332.0 bits (850), Expect = 3.8e-91
Identity = 170/235 (72.34%), Postives = 201/235 (85.53%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAA +AVRQMQNFPFYDKPMR+QYAK KSDC+AKA+G+FVP++KK+KQEEK ERKR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120

Query: 121 EEAHQSV---MPNGTTAENGGANPTFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVL 180
            +   +      NG +A NG   P+F+   PS  E   PNNILFI+NLPHET+SMMLQ+L
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQ---PSGQETMPPNNILFIQNLPHETTSMMLQLL 180

Query: 181 FQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           F+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 FEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Lcy10g000310 vs. TAIR 10
Match: AT1G06960.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 288.5 bits (737), Expect = 4.8e-78
Identity = 150/197 (76.14%), Postives = 169/197 (85.79%), Query Frame = 0


Query: 36  QYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVA 95
           ++GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V 
Sbjct: 7   KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66

Query: 96  KADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENGGANPTFRHANPSAPEA-T 155
           KA+GSFVP+EKK KQEEK ERKR AEE  Q  MPNG T +NG   P F+   PS  +   
Sbjct: 67  KAEGSFVPKEKKMKQEEKVERKRHAEETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMP 126

Query: 156 PNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 215
           PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQ
Sbjct: 127 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQ 186

Query: 216 GFKIDPQHPMAISFAKK 232
           GFKI PQ+PM +SFAKK
Sbjct: 187 GFKITPQNPMVVSFAKK 200

[Close]

BLAST of Lcy10g000310 vs. TAIR 10
Match: AT2G47580.1 (spliceosomal protein U1A )

HSP 1 Score: 255.0 bits (650), Expect = 5.8e-68
Identity = 141/239 (59.00%), Postives = 177/239 (74.06%), Query Frame = 0


Query: 5   DIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTA 64
           ++ PNQTIYI NLNEKVK +ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 65  ASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH 124
           AS A+ +M NFPFYDK MRIQYAKTKSD VAKADG+FVPREK+K+ EEK   K++ ++ H
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132

Query: 125 QSV---MP-NGTTAENGGANPTFRHA------NPSAPE--ATPNNILFIENLPHETSSMM 184
            S    MP N       GA P            P+ PE  A PNNILF++NLPHET+ M+
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192

Query: 185 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M I++AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250

The following BLAST results are available for this feature:

BLAST of Lcy10g000310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H1S6	7.1e-95	77.16	U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
O22922	5.3e-90	72.34	U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ...	[more]
B8AM21	2.5e-87	74.68	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN...	[more]
Q10MR0	5.5e-87	74.25	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q39244	8.2e-67	59.00	U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1...	[more]

BLAST of Lcy10g000310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KA04	1.5e-119	96.97	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1GC84	1.5e-119	96.97	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5D3BF51	3.3e-119	96.54	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C564	3.3e-119	96.54	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LPT7	5.6e-119	96.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1	[more]

BLAST of Lcy10g000310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949507.1	3.1e-119	96.97	U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346...	[more]
XP_008457301.1	6.8e-119	96.54	PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo] >KAA0059...	[more]
XP_023525708.1	6.8e-119	96.54	U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. ...	[more]
XP_004137370.1	1.2e-118	96.10	U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus] >KGN63915.1 hypotheti...	[more]
XP_022154903.1	2.0e-118	95.67	U2 small nuclear ribonucleoprotein B'' 2-like [Momordica charantia]	[more]

BLAST of Lcy10g000310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06960.1	5.1e-96	77.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.2	3.3e-95	76.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G30260.1	3.8e-91	72.34	U2 small nuclear ribonucleoprotein B	[more]
AT1G06960.3	4.8e-78	76.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G47580.1	5.8e-68	59.00	spliceosomal protein U1A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 104..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..141
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 4..231
None	No IPR available	PANTHER	PTHR10501:SF13	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 4..231
None	No IPR available	CDD	cd12246	RRM1_U1A_like	coord: 11..88 e-value: 1.47682E-51 score: 160.001
None	No IPR available	CDD	cd12247	RRM2_U1A_like	coord: 155..227 e-value: 3.97685E-38 score: 125.374
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 158..227 e-value: 3.6E-10 score: 49.8 coord: 11..85 e-value: 8.9E-13 score: 58.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 12..82 e-value: 5.3E-9 score: 35.8 coord: 159..219 e-value: 2.8E-12 score: 46.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 10..89 score: 14.368207
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 157..231 score: 13.293717
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..117 e-value: 2.0E-31 score: 110.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 146..231 e-value: 5.8E-22 score: 79.6
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g000310.1	Lcy10g000310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005686	U2 snRNP
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding