Lcy09g019020 (gene) Sponge gourd (P93075) v1

Overview
NameLcy09g019020
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr09: 42833424 .. 42833699 (+)
RNA-Seq ExpressionLcy09g019020
SyntenyLcy09g019020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCTTTTGCATAGTATTGATCTGGTTGAAGCTCACGTTATTGTCGAAGGAGTTCTCCTGGCGCAAGAAATGGGTTTCCATCCATTTTTGGTAGAATCAGACTCCCAACGAATCATTCATCTTCTCAATCTCTCGATTGACAATTTGTCTAAAGTGGGAAGTTTTCTCTCTGAATTTCAACAGTCGCATGACCCTCGAAGATGCTCGTTTGGTTTCACTCAATCTGGTAATGAGGCGACTCACCAACTAGCCCAACTGGCTCTTCGACGGTGA

mRNA sequence

ATGGGTCTTTTGCATAGTATTGATCTGGTTGAAGCTCACGTTATTGTCGAAGGAGTTCTCCTGGCGCAAGAAATGGGTTTCCATCCATTTTTGGTAGAATCAGACTCCCAACGAATCATTCATCTTCTCAATCTCTCGATTGACAATTTGTCTAAAGTGGGAAGTTTTCTCTCTGAATTTCAACAGTCGCATGACCCTCGAAGATGCTCGTTTGGTTTCACTCAATCTGGTAATGAGGCGACTCACCAACTAGCCCAACTGGCTCTTCGACGGTGA

Coding sequence (CDS)

ATGGGTCTTTTGCATAGTATTGATCTGGTTGAAGCTCACGTTATTGTCGAAGGAGTTCTCCTGGCGCAAGAAATGGGTTTCCATCCATTTTTGGTAGAATCAGACTCCCAACGAATCATTCATCTTCTCAATCTCTCGATTGACAATTTGTCTAAAGTGGGAAGTTTTCTCTCTGAATTTCAACAGTCGCATGACCCTCGAAGATGCTCGTTTGGTTTCACTCAATCTGGTAATGAGGCGACTCACCAACTAGCCCAACTGGCTCTTCGACGGTGA

Protein sequence

MGLLHSIDLVEAHVIVEGVLLAQEMGFHPFLVESDSQRIIHLLNLSIDNLSKVGSFLSEFQQSHDPRRCSFGFTQSGNEATHQLAQLALRR
Homology
BLAST of Lcy09g019020 vs. ExPASy TrEMBL
Match: A0A6J1DBJ7 (uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018973 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.6e-06
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 0

Query: 7   IDLVEAHVIVEGVLLAQEMGFHPFLVESDSQRIIHLLNLSIDNLSKVG---SFLSEFQQS 66
           +D VE   + EG+LLA E GF  F +E+DS RI +LL     + S+VG   S +  F  S
Sbjct: 154 VDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTTDCVDDSEVGVLCSVIKLFLSS 213

Query: 67  HDPRRCSFGFT-QSGNEATHQLAQLAL 90
           H   R SF FT ++GN   H LAQLAL
Sbjct: 214 H-AERVSFSFTHRNGNAXAHLLAQLAL 239

BLAST of Lcy09g019020 vs. ExPASy TrEMBL
Match: A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = 0

Query: 4   LHSIDLVEAHVIVEGVLLAQEMGFHPFLVESDSQRIIHLLNLSIDNLSKVGSFLSEFQQS 63
           + S+D+ EA V VEG+ LA ++G +P ++E+DS RI +L +   ++LS+ G  + + +  
Sbjct: 81  IQSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNLFSQPSEDLSETGEIVLKAKNF 140

Query: 64  -HDPRRCSFGFT-QSGNEATHQLAQLAL 90
                  SF F  + GN+A H LA+ AL
Sbjct: 141 WTQSLHASFNFVKREGNKAAHMLARRAL 168

BLAST of Lcy09g019020 vs. ExPASy TrEMBL
Match: A0A6J1CDQ4 (uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010533 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.1e-04
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0

Query: 6   SIDLVEAHVIVEGVLLAQEMGFHPFLVESDSQRIIHLLNLSIDNLSKVGSFLSEFQQSHD 65
           S+D  EA   VEG+ +A E G  P L+E+DS RI +L     + LSK GS + E+ ++H 
Sbjct: 140 SVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARDKEGLSKTGSII-EYVKTHL 199

Query: 66  PRR--CSFGFT-QSGNEATHQLAQLALR 91
             R   S+ FT ++GN   H LA+ AL+
Sbjct: 200 ATRLQVSYSFTKRTGNTIAHLLARRALQ 226

BLAST of Lcy09g019020 vs. NCBI nr
Match: XP_022150944.1 (uncharacterized protein LOC111018973 [Momordica charantia])

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 0

Query: 7   IDLVEAHVIVEGVLLAQEMGFHPFLVESDSQRIIHLLNLSIDNLSKVG---SFLSEFQQS 66
           +D VE   + EG+LLA E GF  F +E+DS RI +LL     + S+VG   S +  F  S
Sbjct: 154 VDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTTDCVDDSEVGVLCSVIKLFLSS 213

Query: 67  HDPRRCSFGFT-QSGNEATHQLAQLAL 90
           H   R SF FT ++GN   H LAQLAL
Sbjct: 214 H-AERVSFSFTHRNGNAXAHLLAQLAL 239

BLAST of Lcy09g019020 vs. NCBI nr
Match: XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-04
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = 0

Query: 4   LHSIDLVEAHVIVEGVLLAQEMGFHPFLVESDSQRIIHLLNLSIDNLSKVGSFLSEFQQS 63
           + S+D+ EA V VEG+ LA ++G +P ++E+DS RI +L +   ++LS+ G  + + +  
Sbjct: 81  IQSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNLFSQPSEDLSETGEIVLKAKNF 140

Query: 64  -HDPRRCSFGFT-QSGNEATHQLAQLAL 90
                  SF F  + GN+A H LA+ AL
Sbjct: 141 WTQSLHASFNFVKREGNKAAHMLARRAL 168

BLAST of Lcy09g019020 vs. NCBI nr
Match: XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])

HSP 1 Score: 54.3 bits (129), Expect = 6.4e-04
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0

Query: 6   SIDLVEAHVIVEGVLLAQEMGFHPFLVESDSQRIIHLLNLSIDNLSKVGSFLSEFQQSHD 65
           S+D  EA   VEG+ +A E G  P L+E+DS RI +L     + LSK GS + E+ ++H 
Sbjct: 140 SVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARDKEGLSKTGSII-EYVKTHL 199

Query: 66  PRR--CSFGFT-QSGNEATHQLAQLALR 91
             R   S+ FT ++GN   H LA+ AL+
Sbjct: 200 ATRLQVSYSFTKRTGNTIAHLLARRALQ 226

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DBJ75.6e-0645.98uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1CIF11.1e-0436.36uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A6J1CDQ43.1e-0440.91uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
Match NameE-valueIdentityDescription
XP_022150944.11.2e-0545.98uncharacterized protein LOC111018973 [Momordica charantia][more]
XP_022140628.12.2e-0436.36uncharacterized protein LOC111011237 [Momordica charantia][more]
XP_022139684.16.4e-0440.91uncharacterized protein LOC111010533 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 6..87
e-value: 1.3E-5
score: 25.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy09g019020.1Lcy09g019020.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity