Lcy09g018230 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g018230
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr09: 39584010 .. 39584423 (-)
RNA-Seq Expression	Lcy09g018230
Synteny	Lcy09g018230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGAAGCTATCACCATTTTAGAAGGACTCAAGCAATTATCAGAGAGTTACAGAGAGTACTCGGCGATGGCTAAGCCTCCGTTGGTGGTGGAATCAGACGCCGCCGAAGTTGTTAAGCTCCTTAACCACGATTCTGAAGATTGCTCGGAAATTTCGCTGATCATCGACGAGATTGAGGATCGGGCAAAGCAATCGAACGTGGTAGCTTTCGAGTATTGTCCCAGAAATTGTAATCTTTTGGCGCATAGGCTAGCGCACGTGTCTGCTACTAAAGGCAATTTTTCCTTCAGTTCTTTTGAAATTTCTCAACCCTTGAGAATGGATTCCGACCAATTTGGTTTTTGTTGTAAAGGCTGGTTTTTCTCCATTTTGGAGAAAGAAGTTGTTGTACCTAACTTTTATTTCCTTTAA

mRNA sequence

ATGCTGGAAGCTATCACCATTTTAGAAGGACTCAAGCAATTATCAGAGAGTTACAGAGAGTACTCGGCGATGGCTAAGCCTCCGTTGGTGGTGGAATCAGACGCCGCCGAAGTTGTTAAGCTCCTTAACCACGATTCTGAAGATTGCTCGGAAATTTCGCTGATCATCGACGAGATTGAGGATCGGGCAAAGCAATCGAACGTGGTAGCTTTCGAGTATTGTCCCAGAAATTGTAATCTTTTGGCGCATAGGCTAGCGCACGTGTCTGCTACTAAAGGCAATTTTTCCTTCAGTTCTTTTGAAATTTCTCAACCCTTGAGAATGGATTCCGACCAATTTGGTTTTTGTTGTAAAGGCTGGTTTTTCTCCATTTTGGAGAAAGAAGTTGTTGTACCTAACTTTTATTTCCTTTAA

Coding sequence (CDS)

ATGCTGGAAGCTATCACCATTTTAGAAGGACTCAAGCAATTATCAGAGAGTTACAGAGAGTACTCGGCGATGGCTAAGCCTCCGTTGGTGGTGGAATCAGACGCCGCCGAAGTTGTTAAGCTCCTTAACCACGATTCTGAAGATTGCTCGGAAATTTCGCTGATCATCGACGAGATTGAGGATCGGGCAAAGCAATCGAACGTGGTAGCTTTCGAGTATTGTCCCAGAAATTGTAATCTTTTGGCGCATAGGCTAGCGCACGTGTCTGCTACTAAAGGCAATTTTTCCTTCAGTTCTTTTGAAATTTCTCAACCCTTGAGAATGGATTCCGACCAATTTGGTTTTTGTTGTAAAGGCTGGTTTTTCTCCATTTTGGAGAAAGAAGTTGTTGTACCTAACTTTTATTTCCTTTAA

Protein sequence

MLEAITILEGLKQLSESYREYSAMAKPPLVVESDAAEVVKLLNHDSEDCSEISLIIDEIEDRAKQSNVVAFEYCPRNCNLLAHRLAHVSATKGNFSFSSFEISQPLRMDSDQFGFCCKGWFFSILEKEVVVPNFYFL

Homology

[Close]

BLAST of Lcy09g018230 vs. NCBI nr
Match: XP_024046691.1 (uncharacterized protein LOC112101027 [Citrus clementina])

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-06
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 28  PLVVESDAAEVVKLLNHDSEDCSEISLIIDEIEDRAKQSNVVAFEYCPRNCNLLAHRLAH 87
           PL+VESD+ EVV L+N  +   +EI  +  E++DR K+ N V  ++ PR CN LAH LA 
Sbjct: 198 PLIVESDSQEVVDLINSKTSSRAEIFWVASEVQDRMKRLNQVKVQHTPRGCNTLAHSLAR 257

Query: 88  VSATKGNFSF 98
           ++  + +F F
Sbjct: 258 LALEQTDFVF 267

[Close]

BLAST of Lcy09g018230 vs. NCBI nr
Match: XP_006473914.2 (uncharacterized protein LOC102629934 [Citrus sinensis])

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-05
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 28  PLVVESDAAEVVKLLNHDSEDCSEISLIIDEIEDRAKQSNVVAFEYCPRNCNLLAHRLAH 87
           PL++ESD+ EVV+L++      +EI  +I EI+DR K+   V  ++ PR CN LAH LA+
Sbjct: 179 PLIIESDSKEVVELISLKKSTRTEIFWVISEIQDRMKRLKKVKIQHTPRGCNSLAHSLAN 238

Query: 88  VSATKGNFSF 98
           ++    +F F
Sbjct: 239 LALELNDFVF 248

[Close]

BLAST of Lcy09g018230 vs. NCBI nr
Match: XP_024042007.1 (uncharacterized protein LOC112099133 [Citrus clementina])

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-05
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 28  PLVVESDAAEVVKLLNHDSEDCSEISLIIDEIEDRAKQSNVVAFEYCPRNCNLLAHRLAH 87
           PL++ESD+ EVV+L++      +EI  +I EI+DR K+   V  ++ PR CN LAH LA+
Sbjct: 87  PLIIESDSKEVVELISLKKSTRTEIFWVISEIQDRMKRLKKVKIQHTPRGCNSLAHSLAN 146

Query: 88  VSATKGNFSF 98
           ++    +F F
Sbjct: 147 LALELNDFVF 156

[Close]

BLAST of Lcy09g018230 vs. NCBI nr
Match: KAF7821986.1 (putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora])

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-04
Identity = 34/98 (34.69%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 2   LEAITILEGLKQLSESYREYSAMAKPPLVVESDAAEVVKLLNHDSEDCSEISLIIDEIED 61
           +EA+ +LEG+KQ          M    +++ESDA  VV LLN  + D S + L+I+EI +
Sbjct: 541 VEALAVLEGMKQA-------QLMCCNRIIIESDAQRVVNLLNKGNIDISYLGLVIEEILE 600

Query: 62  RAKQSNVVAFEYCPRNCNLLAHRLAHVSATKGNFSFSS 100
                + ++F +  R  N++AH LAH   +  NF ++S
Sbjct: 601 LKSHFSSISFNWVKREANMVAHTLAH---SVVNFPYNS 628

[Close]

BLAST of Lcy09g018230 vs. NCBI nr
Match: XP_024046617.1 (uncharacterized protein LOC112100972 [Citrus clementina])

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-04
Identity = 26/70 (37.14%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 28  PLVVESDAAEVVKLLNHDSEDCSEISLIIDEIEDRAKQSNVVAFEYCPRNCNLLAHRLAH 87
           P+++ESD+ EVV L++ +    +EI  ++ E+ DR K+   V  +Y PRNCN +AH LA 
Sbjct: 90  PVIMESDSQEVVSLMSCEKSTRTEIFWVVAEVHDRIKRLKHVKVQYTPRNCNSVAHSLAK 149

Query: 88  VSATKGNFSF 98
           ++    +F +
Sbjct: 150 LALELNDFVY 159

The following BLAST results are available for this feature:

BLAST of Lcy09g018230 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g018230 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g018230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024046691.1	3.5e-06	42.86	uncharacterized protein LOC112101027 [Citrus clementina]	[more]
XP_006473914.2	3.0e-05	41.43	uncharacterized protein LOC102629934 [Citrus sinensis]	[more]
XP_024042007.1	3.0e-05	41.43	uncharacterized protein LOC112099133 [Citrus clementina]	[more]
KAF7821986.1	1.9e-04	34.69	putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-c...	[more]
XP_024046617.1	2.5e-04	37.14	uncharacterized protein LOC112100972 [Citrus clementina]	[more]

BLAST of Lcy09g018230 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 28..87 e-value: 7.4E-11 score: 41.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..95 e-value: 2.5E-5 score: 26.2
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 1..87 e-value: 9.66621E-13 score: 58.8648

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g018230.1	Lcy09g018230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity