Lcy09g018130 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g018130
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotransposon protein
Location	Chr09: 38980797 .. 38983277 (+)
RNA-Seq Expression	Lcy09g018130
Synteny	Lcy09g018130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGGATGGGAAGGTTCGGCTGCTGATTCTCGTGTACTCAGGGATGCGATATCACGCCCGAACGGACTAATAGTGTCGAAGGGTATGGAACCCAGTATCAATCTAAATTAGGAACTCTTATGTCATCCTTACCTTCTTTTCTGAACAGGCTACTACTACCTTTGTGATGTCGGGTACCCAAACGCAGAGGGTTTCTTGGCACCTTACAGAGGAGAGCGGTACCACTTGATTGGAAATTTAATCGCTTCTAATTTATATTGAATTAACTAAAGAATATGTCGTTGTTGTGCATTAATCCAAGTATAAATTATGCACTACCAAGTAATACCTGGAGTATTCCAGGGTCATATCCACAGGGAAGGAGCGAGTAGTAAAAATATCTCAAATTAAATTTTATTCTAATGATGTTGTGTTGGGGTAATAAGAATAAAATATGGATGCGACAGGTTGAACATGCGATAAAGAAAAGCAATAATAATGCGATAGAAAGATACGATGGATGATGAGCTATCAAGACTTTCGCTGCAGCAACCACATGCGACAGATAAGATATTAATGTAGCGCATAACAATGAATCGACAAAATATTGATGCCTAAGCGAGAAATAAACATGTGATTCCCTTCCGGTATTACACATGTGATGAACTAAGAATATTCCTATTGCTTAATTCATGTGTTTAATCATTTCTCTATATGCTTCCAAGCGGTTGAATTATCCCTAAAGCAACCCAAACACATTCATGAAATATCCTAAGCGGCTAAGCTATTCCTAACACAACCAGACCACATGTAATGCATTATCTTGCTCTACTTAGATATTTCCACATGCATTACCCTTCCAGGATTTATCATGCTACTACCTCTATCGGTTGATCAGACGGATATTAGTAATGAACGAATTATCACATCTAAGTAGAAAGCATCAATATCATTGATTCATTGCATTGCATACAAAAATAATCTTAATGTCATATGGGCGCCTAGGCTAAGCCTTGATAAAAAGAAATTAGTACATGCTACAAAATAAAGCATACAATAAAACATAAAAATCTAAGAATGCCTTGGATCCTTGGATCGTTGGATGATTTCTTCTCCTTTCATCTCCCCTCTATTTATAAACTTTTCTTACTTGGAGCCAAAGGGGGGTGTTGCTTGGAGCCAAAGCATCATCTCATGGATAGAAACTTGTTCCCCACTCAACACTATTCACCAACTCATCAAGCTTCTCATGCTCTAGCATCATCATGCATCCCATGCGTCAGACTGCTACAACAACAAGCTTTCCATCAGTCAGACTGCTACAGCATCAAGCTTTCCATGAGTCAGACTGCTACAGCATCAAGCTTTCCATGCTTGTCATGCTCCAAGCTTCTAACTCATCATGCTCTAGCGTGTCATGCTCCAAGCGCATCATGCTCTAGCGCATAAGCTTCCAAGCTTGACATGCTCTAGCGCATAATTGGCCAAGCTTTTCCTGATGCAACAATAAATTAGAATTAGTGCAGTTTTGTATGAATTTCAAAGATAATAATCAATATGAGCACATTAATACAAATAAATCAATATTACAGCATCTAGCATATAAATTAGTTAAAACTTGGGTATTTTCACTCTCTTGAGGCTCACAATAAGCTTAAATTAGACACCTAATAACTTGATATTTTCAAGTTATCACCACTTAACTGAGTGGCGTGGGGGAGGTAATACACCTACTACACCAAGAGAGTTCTTCAACATGAAGCATTCTTCTGCATGTAATATTATCGAGAGAGCATTTGGTGCGCTGAAAGGACGTTGGGCGATACTTCGGGGGAAGTCCTACTACCCTGTTCGGACCCAATGTCGAATCATAACAGCGTGCTGTTTACTCCACAACCTTATCACCCGGGAGATAGGTCTGGATGTTGTGTTGGATGAAGGTGATATTGGTCGGTCCAAACCCGTACCTCTCGATGGCGAGAACATTACCTTCATTCAAAGCTCCACTGAATGGACTCAGAAGCGAGATGACCTAGTGAACAGGATGTTCAACGCGTGGGGGCAACATCACTGATCCATTTTGGACATACGACTATCTGTTATATTGTAATTTAACTATTTCTGACATTTCTTGGACCTTAAATTTTTCTACAATGTAAACGATCTATTTCATGTAACTTAAGTTCTTTATGGAAAACCATCGTTGATGTTGTTATTCTACACTATGTTTCTAACTTTGTGTCTGCAATTACTTCATAAATAACTCTTCTACATTATGTCGCCGATAGTGTGACTTGATCAGAATATGGACTTACGAAATCTAATGACGCAGTACTCTATCCATGTAGGATAATGGCAGGTGCAAATAAACACCTGAAACACATTTGGACGAGGCAGGAGGAGGTGAAGTTGGTGGAATGCCTCGTTGAGCTCGTGTCCACGAAGGCGGTTGGAGAGGGGACAACGACACGTTTAGGCCCGGATATCAAGCCCGACTGA

mRNA sequence

ATGCCTGGATGGGAAGGTTCGGCTGCTGATTCTCGTGTACTCAGGGATGCGATATCACGCCCGAACGGACTAATAGTGTCGAAGGGCTACTACTACCTTTGTGATGTCGGGTACCCAAACGCAGAGGGTTTCTTGGCACCTTACAGAGGAGAGCGTTATCACCACTTAACTGAGTGGCGTGGGGGAGGTAATACACCTACTACACCAAGAGAGTTCTTCAACATGAAGCATTCTTCTGCATGTAATATTATCGAGAGAGCATTTGGTCTGGATGTTGTGTTGGATGAAGGTGATATTGGTCGGTCCAAACCCGTACCTCTCGATGGCGAGAACATTACCTTCATTCAAAGCTCCACTGAATGGACTCAGAAGCGAGATGACCTAGTGAACAGGATGTTCAACGCGATAATGGCAGGTGCAAATAAACACCTGAAACACATTTGGACGAGGCAGGAGGAGGTGAAGTTGGTGGAATGCCTCGTTGAGCTCGTGTCCACGAAGGCGGTTGGAGAGGGGACAACGACACGTTTAGGCCCGGATATCAAGCCCGACTGA

Coding sequence (CDS)

ATGCCTGGATGGGAAGGTTCGGCTGCTGATTCTCGTGTACTCAGGGATGCGATATCACGCCCGAACGGACTAATAGTGTCGAAGGGCTACTACTACCTTTGTGATGTCGGGTACCCAAACGCAGAGGGTTTCTTGGCACCTTACAGAGGAGAGCGTTATCACCACTTAACTGAGTGGCGTGGGGGAGGTAATACACCTACTACACCAAGAGAGTTCTTCAACATGAAGCATTCTTCTGCATGTAATATTATCGAGAGAGCATTTGGTCTGGATGTTGTGTTGGATGAAGGTGATATTGGTCGGTCCAAACCCGTACCTCTCGATGGCGAGAACATTACCTTCATTCAAAGCTCCACTGAATGGACTCAGAAGCGAGATGACCTAGTGAACAGGATGTTCAACGCGATAATGGCAGGTGCAAATAAACACCTGAAACACATTTGGACGAGGCAGGAGGAGGTGAAGTTGGTGGAATGCCTCGTTGAGCTCGTGTCCACGAAGGCGGTTGGAGAGGGGACAACGACACGTTTAGGCCCGGATATCAAGCCCGACTGA

Protein sequence

MPGWEGSAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYHHLTEWRGGGNTPTTPREFFNMKHSSACNIIERAFGLDVVLDEGDIGRSKPVPLDGENITFIQSSTEWTQKRDDLVNRMFNAIMAGANKHLKHIWTRQEEVKLVECLVELVSTKAVGEGTTTRLGPDIKPD

Homology

[Close]

BLAST of Lcy09g018130 vs. ExPASy TrEMBL
Match: A0A5A7SYW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00430 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.9e-48
Identity = 102/183 (55.74%), Postives = 126/183 (68.85%), Query Frame = 0


Query: 1   MPGWEGSAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYHHLTEWR 60
           + GW+GSAADSR+LRDAISR NGL V KGYYYLCD GYPNAEGFLAPYRG+RY HL EWR
Sbjct: 183 LAGWKGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRY-HLQEWR 242

Query: 61  GGGNTPTTPREFFNMKHSSACNIIERAFGL-----------------DVVLDEGDIGRSK 120
           G  N PT  +E+FNMKHSSA N+IERAFG+                 D V DE +   + 
Sbjct: 243 GAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSEMTYCDDVEDEDEGDSTY 302

Query: 121 PVPLDGENITFIQSSTEWTQKRDDLVNRMF-NAIMAGANKHLKHIWTRQEEVKLVECLVE 166
                 E+I +I+++ EW+Q RDDL   MF +  M+ +N+  +H+WTR+EE  LVECL+E
Sbjct: 303 ATTTASEDIQYIETTNEWSQWRDDLAASMFIDWHMSTSNRAPRHVWTREEEGTLVECLME 362

[Close]

BLAST of Lcy09g018130 vs. ExPASy TrEMBL
Match: A0A5A7VG45 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00220 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.2e-42
Identity = 98/206 (47.57%), Postives = 121/206 (58.74%), Query Frame = 0


Query: 1   MPGWEGSAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYHHLTEWR 60
           MPGWEGSA+DSRVLRDA+SR  GL V KGYYYLCD GYPNAEGFLAPYRG+RY HLTEWR
Sbjct: 140 MPGWEGSASDSRVLRDAVSRLTGLKVPKGYYYLCDAGYPNAEGFLAPYRGQRY-HLTEWR 199

Query: 61  GGGNTPTTPREFFNMKHSSACNIIERAF-------------------------------- 120
            GGN P  P+E FNM+HS A N+IERAF                                
Sbjct: 200 -GGNPPKCPKELFNMRHSFARNVIERAFGSLNCRWTILQGRSYYLVDIQCKIITACCLLH 259

Query: 121 -------GLDVVLDEGDIGRSKPVPLDGENITFIQSSTEWTQKRDDLVNRMF---NAIMA 165
                  G +    E  +G      ++ ENI F++++  WT+ RD+L N+MF   N + +
Sbjct: 260 NLIHREMGSEATFKEPHLGEGDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNNMAS 319

[Close]

BLAST of Lcy09g018130 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.3e-41
Identity = 99/207 (47.83%), Postives = 122/207 (58.94%), Query Frame = 0


Query: 1   MPGWEGSAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYHHLTEWR 60
           + GWEGSAADSR+LRDA+SRPN L V KGYYYL DVGYPNAEGFLAPYRG+RY HL EWR
Sbjct: 186 LAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDVGYPNAEGFLAPYRGQRY-HLQEWR 245

Query: 61  GGGNTPTTPREFFNMKHSSACNIIERAFG------------------------------- 120
           G  N P+T +EFFNMKH SA N+IERAFG                               
Sbjct: 246 GPENAPSTSKEFFNMKHYSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 305

Query: 121 -----------LDVVLDEGDIGRSKPVPLDGENITFIQSSTEWTQKRDDLVNRMFNAIMA 166
                      ++  +DE D   S       ++I +I++S EW+Q RD+L       IM 
Sbjct: 306 NLINREMTNFDIEDNIDEVD---STHATTAADDIHYIETSNEWSQWRDNLAEE----IMT 365

[Close]

BLAST of Lcy09g018130 vs. ExPASy TrEMBL
Match: A0A5A7U3R2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G001010 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 7.1e-40
Identity = 93/206 (45.15%), Postives = 118/206 (57.28%), Query Frame = 0


Query: 1   MPGWEGSAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYHHLTEWR 60
           MPGWEGSA+DSRVLRD +SRP GL V KGYYYLCD  Y N EGFLAPYRG+RY HL EWR
Sbjct: 153 MPGWEGSASDSRVLRDVVSRPIGLKVPKGYYYLCDASYLNVEGFLAPYRGQRY-HLIEWR 212

Query: 61  GGGNTPTTPREFFNMKHSSACNIIERAFG------------------------------- 120
            GGN P  P+E FNM+HSSA N+IERAFG                               
Sbjct: 213 -GGNPPKCPKELFNMRHSSARNVIERAFGSLKSRWAILRGRSYYPVDIQCKIITACCLLH 272

Query: 121 --------LDVVLDEGDIGRSKPVPLDGENITFIQSSTEWTQKRDDLVNRMF---NAIMA 165
                    +   +E  +G      ++ ENI F++++  WT+ RD+L N+MF   N + +
Sbjct: 273 NLIHREMSSEATFEEPHLGEDDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNNMTS 332

[Close]

BLAST of Lcy09g018130 vs. ExPASy TrEMBL
Match: A0A5D3C7X6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002160 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 7.1e-40
Identity = 93/206 (45.15%), Postives = 118/206 (57.28%), Query Frame = 0


Query: 1   MPGWEGSAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYHHLTEWR 60
           MPGWEGSA+DSRVLRD +SRP GL V KGYYYLCD  Y N EGFLAPYRG+RY HL EWR
Sbjct: 131 MPGWEGSASDSRVLRDVVSRPIGLKVPKGYYYLCDASYLNVEGFLAPYRGQRY-HLIEWR 190

Query: 61  GGGNTPTTPREFFNMKHSSACNIIERAFG------------------------------- 120
            GGN P  P+E FNM+HSSA N+IERAFG                               
Sbjct: 191 -GGNPPKCPKELFNMRHSSARNVIERAFGSLKSRWAILRGRSYYPVDIQCKIITACCLLH 250

Query: 121 --------LDVVLDEGDIGRSKPVPLDGENITFIQSSTEWTQKRDDLVNRMF---NAIMA 165
                    +   +E  +G      ++ ENI F++++  WT+ RD+L N+MF   N + +
Sbjct: 251 NLIHREMSSEATFEEPHLGEDDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNNMTS 310

[Close]

BLAST of Lcy09g018130 vs. NCBI nr
Match: KAA0036474.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 202.2 bits (513), Expect = 3.8e-48
Identity = 102/183 (55.74%), Postives = 126/183 (68.85%), Query Frame = 0


Query: 1   MPGWEGSAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYHHLTEWR 60
           + GW+GSAADSR+LRDAISR NGL V KGYYYLCD GYPNAEGFLAPYRG+RY HL EWR
Sbjct: 183 LAGWKGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRY-HLQEWR 242

Query: 61  GGGNTPTTPREFFNMKHSSACNIIERAFGL-----------------DVVLDEGDIGRSK 120
           G  N PT  +E+FNMKHSSA N+IERAFG+                 D V DE +   + 
Sbjct: 243 GAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSEMTYCDDVEDEDEGDSTY 302

Query: 121 PVPLDGENITFIQSSTEWTQKRDDLVNRMF-NAIMAGANKHLKHIWTRQEEVKLVECLVE 166
                 E+I +I+++ EW+Q RDDL   MF +  M+ +N+  +H+WTR+EE  LVECL+E
Sbjct: 303 ATTTASEDIQYIETTNEWSQWRDDLAASMFIDWHMSTSNRAPRHVWTREEEGTLVECLME 362

[Close]

BLAST of Lcy09g018130 vs. NCBI nr
Match: KAA0065306.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.0 bits (463), Expect = 2.4e-42
Identity = 98/206 (47.57%), Postives = 121/206 (58.74%), Query Frame = 0


Query: 1   MPGWEGSAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYHHLTEWR 60
           MPGWEGSA+DSRVLRDA+SR  GL V KGYYYLCD GYPNAEGFLAPYRG+RY HLTEWR
Sbjct: 140 MPGWEGSASDSRVLRDAVSRLTGLKVPKGYYYLCDAGYPNAEGFLAPYRGQRY-HLTEWR 199

Query: 61  GGGNTPTTPREFFNMKHSSACNIIERAF-------------------------------- 120
            GGN P  P+E FNM+HS A N+IERAF                                
Sbjct: 200 -GGNPPKCPKELFNMRHSFARNVIERAFGSLNCRWTILQGRSYYLVDIQCKIITACCLLH 259

Query: 121 -------GLDVVLDEGDIGRSKPVPLDGENITFIQSSTEWTQKRDDLVNRMF---NAIMA 165
                  G +    E  +G      ++ ENI F++++  WT+ RD+L N+MF   N + +
Sbjct: 260 NLIHREMGSEATFKEPHLGEGDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNNMAS 319

[Close]

BLAST of Lcy09g018130 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 179.5 bits (454), Expect = 2.7e-41
Identity = 99/207 (47.83%), Postives = 122/207 (58.94%), Query Frame = 0


Query: 1   MPGWEGSAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYHHLTEWR 60
           + GWEGSAADSR+LRDA+SRPN L V KGYYYL DVGYPNAEGFLAPYRG+RY HL EWR
Sbjct: 186 LAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDVGYPNAEGFLAPYRGQRY-HLQEWR 245

Query: 61  GGGNTPTTPREFFNMKHSSACNIIERAFG------------------------------- 120
           G  N P+T +EFFNMKH SA N+IERAFG                               
Sbjct: 246 GPENAPSTSKEFFNMKHYSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 305

Query: 121 -----------LDVVLDEGDIGRSKPVPLDGENITFIQSSTEWTQKRDDLVNRMFNAIMA 166
                      ++  +DE D   S       ++I +I++S EW+Q RD+L       IM 
Sbjct: 306 NLINREMTNFDIEDNIDEVD---STHATTAADDIHYIETSNEWSQWRDNLAEE----IMT 365

[Close]

BLAST of Lcy09g018130 vs. NCBI nr
Match: KAA0048191.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-39
Identity = 93/206 (45.15%), Postives = 118/206 (57.28%), Query Frame = 0


Query: 1   MPGWEGSAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYHHLTEWR 60
           MPGWEGSA+DSRVLRD +SRP GL V KGYYYLCD  Y N EGFLAPYRG+RY HL EWR
Sbjct: 153 MPGWEGSASDSRVLRDVVSRPIGLKVPKGYYYLCDASYLNVEGFLAPYRGQRY-HLIEWR 212

Query: 61  GGGNTPTTPREFFNMKHSSACNIIERAFG------------------------------- 120
            GGN P  P+E FNM+HSSA N+IERAFG                               
Sbjct: 213 -GGNPPKCPKELFNMRHSSARNVIERAFGSLKSRWAILRGRSYYPVDIQCKIITACCLLH 272

Query: 121 --------LDVVLDEGDIGRSKPVPLDGENITFIQSSTEWTQKRDDLVNRMF---NAIMA 165
                    +   +E  +G      ++ ENI F++++  WT+ RD+L N+MF   N + +
Sbjct: 273 NLIHREMSSEATFEEPHLGEDDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNNMTS 332

[Close]

BLAST of Lcy09g018130 vs. NCBI nr
Match: TYK08067.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-39
Identity = 93/206 (45.15%), Postives = 118/206 (57.28%), Query Frame = 0


Query: 1   MPGWEGSAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYHHLTEWR 60
           MPGWEGSA+DSRVLRD +SRP GL V KGYYYLCD  Y N EGFLAPYRG+RY HL EWR
Sbjct: 131 MPGWEGSASDSRVLRDVVSRPIGLKVPKGYYYLCDASYLNVEGFLAPYRGQRY-HLIEWR 190

Query: 61  GGGNTPTTPREFFNMKHSSACNIIERAFG------------------------------- 120
            GGN P  P+E FNM+HSSA N+IERAFG                               
Sbjct: 191 -GGNPPKCPKELFNMRHSSARNVIERAFGSLKSRWAILRGRSYYPVDIQCKIITACCLLH 250

Query: 121 --------LDVVLDEGDIGRSKPVPLDGENITFIQSSTEWTQKRDDLVNRMF---NAIMA 165
                    +   +E  +G      ++ ENI F++++  WT+ RD+L N+MF   N + +
Sbjct: 251 NLIHREMSSEATFEEPHLGEDDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNNMTS 310

[Close]

BLAST of Lcy09g018130 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-17
Identity = 44/90 (48.89%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 1   MPGWEGSAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYHHLTEWR 60
           + GWEGSA DSRVL DA+ +          +YL D G+ N   FLAP+RG RY HL E+ 
Sbjct: 29  LSGWEGSAHDSRVLSDALRK----------FYLVDCGFANRLNFLAPFRGVRY-HLQEFA 88

Query: 61  GGGNTPTTPREFFNMKHSSACNIIERAFGL 91
           G    P TP E FN++H S  N+IER FG+
Sbjct: 89  GQRRDPETPHELFNLRHVSLRNVIERIFGI 107

[Close]

BLAST of Lcy09g018130 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-14
Identity = 52/166 (31.33%), Postives = 75/166 (45.18%), Query Frame = 0


Query: 1   MPGWEGSAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYHHLTEWR 60
           + GWEGSA+D +VL  A++R N L V +G YY+ D  YPN  GF+APY G          
Sbjct: 189 LAGWEGSASDQQVLNAALTRRNKLQVPQGKYYIVDNKYPNLPGFIAPYHGV--------- 248

Query: 61  GGGNTPTTPREFFNMKHSSACNIIERAFG-----LDVVLDEGDIGRSKPVPLDGENITFI 120
              N+    +E FN +H      I R FG       ++L       + P PL  +    I
Sbjct: 249 -STNSREEAKEMFNERHKLLHRAIHRTFGALKERFPILLS------APPYPLQTQVKLVI 308

Query: 121 QSSTEWT----QKRDDLVNRMFNAIMAGANKHLKHIWTRQEEVKLV 158
            +         +K DDLV RMF           + +   +E+V++V
Sbjct: 309 AACALHNYVRLEKPDDLVFRMFEEETLAEAGEDREVALEEEQVEIV 338

[Close]

BLAST of Lcy09g018130 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 3.2e-08
Identity = 34/91 (37.36%), Postives = 47/91 (51.65%), Query Frame = 0


Query: 3   GWEGSAADSRVLRDAISRPNGL-IVSKGYYYLCDVGYPNAEGFLAPYRGER----YHHLT 62
           G  GS  D+ VL+ A    +   +     YYL D GYPN +G LAPYR  R     +H++
Sbjct: 224 GAPGSCYDTAVLQIAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSRNRVVRYHMS 283

Query: 63  EWRGGGNTPTTPREFFNMKHSSACNIIERAF 89
           ++  G   P    E FN  H+S  ++IER F
Sbjct: 284 QFYYGPR-PRNKHELFNQCHTSLRSVIERTF 313

[Close]

BLAST of Lcy09g018130 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 1.2e-04
Identity = 25/50 (50.00%), Postives = 28/50 (56.00%), Query Frame = 0


Query: 3   GWEGSAADSRVLRDAIS-RPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGE 52
           G  GS  D+RVL  AIS  P   +     YYL D GY N  G+LAPYR E
Sbjct: 158 GMAGSTHDARVLSAAISDDPLFHVPPDSKYYLVDSGYANKRGYLAPYRRE 207

The following BLAST results are available for this feature:

BLAST of Lcy09g018130 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g018130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYW1	1.9e-48	55.74	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VG45	1.2e-42	47.57	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
E5GCB5	1.3e-41	47.83	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A5A7U3R2	7.1e-40	45.15	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C7X6	7.1e-40	45.15	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lcy09g018130 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036474.1	3.8e-48	55.74	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065306.1	2.4e-42	47.57	retrotransposon protein [Cucumis melo var. makuwa]	[more]
ADN34114.1	2.7e-41	47.83	retrotransposon protein [Cucumis melo subsp. melo]	[more]
KAA0048191.1	1.5e-39	45.15	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK08067.1	1.5e-39	45.15	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy09g018130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35695.1	1.3e-17	48.89	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G41980.1	3.0e-14	31.33	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	3.2e-08	37.36	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	1.2e-04	50.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 3..90 e-value: 7.6E-6 score: 25.7
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 2..89
None	No IPR available	PANTHER	PTHR22930:SF211	NUCLEASE HARBI1-RELATED	coord: 2..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g018130.1	Lcy09g018130.1	mRNA