Lcy09g016830 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g016830
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RAB6-interacting golgin
Location	Chr09: 30882419 .. 30882652 (-)
RNA-Seq Expression	Lcy09g016830
Synteny	Lcy09g016830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACTCGGGCATGATAAGCAGCCATGTGAATGCGATTGGGAGTCTAGTGAGGGAGGATCAAGTCGAGGAGCTTTCGAGATCGGCATTCGCATTGTTTCGAGCCAAGGAAGAGAAGATCGAGAGGAAGAAGATGGAGATGAGAGACAAGGTGGAGGCCCACCTTGGACGAGCTGAAGAAGCGATGAAGCGATTGACGGAGATTCGCGAAGTAAGTTTGATCGAGCATTGA

mRNA sequence

ATGAAGAACTCGGGCATGATAAGCAGCCATGTGAATGCGATTGGGAGTCTAGTGAGGGAGGATCAAGTCGAGGAGCTTTCGAGATCGGCATTCGCATTGTTTCGAGCCAAGGAAGAGAAGATCGAGAGGAAGAAGATGGAGATGAGAGACAAGGTGGAGGCCCACCTTGGACGAGCTGAAGAAGCGATGAAGCGATTGACGGAGATTCGCGAAGTAAGTTTGATCGAGCATTGA

Coding sequence (CDS)

ATGAAGAACTCGGGCATGATAAGCAGCCATGTGAATGCGATTGGGAGTCTAGTGAGGGAGGATCAAGTCGAGGAGCTTTCGAGATCGGCATTCGCATTGTTTCGAGCCAAGGAAGAGAAGATCGAGAGGAAGAAGATGGAGATGAGAGACAAGGTGGAGGCCCACCTTGGACGAGCTGAAGAAGCGATGAAGCGATTGACGGAGATTCGCGAAGTAAGTTTGATCGAGCATTGA

Protein sequence

MKNSGMISSHVNAIGSLVREDQVEELSRSAFALFRAKEEKIERKKMEMRDKVEAHLGRAEEAMKRLTEIREVSLIEH

Homology

[Close]

BLAST of Lcy09g016830 vs. ExPASy TrEMBL
Match: A0A6J1CNF1 (RAB6-interacting golgin OS=Momordica charantia OX=3673 GN=LOC111012700 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-19
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MKNSGMISSHVNAIGSLVREDQVEELSRSAFALFRAKEEKIERKKMEMRDKVEAHLGRAE 60
          ++NSGMI SHVNAIGS ++EDQ EELSRSAFALFRAKEE+IERKKMEMRDKVEA LGRAE
Sbjct: 20 VRNSGMI-SHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAE 79

Query: 61 EAMKRLTEIRE 72
          EA KRL EIRE
Sbjct: 80 EATKRLAEIRE 89

[Close]

BLAST of Lcy09g016830 vs. ExPASy TrEMBL
Match: A0A5D3CH78 (RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G001010 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.1e-18
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MKNSGMISSHV-NAIGSLVREDQVEELSRSAFALFRAKEEKIERKKMEMRDKVEAHLGRA 60
          +KNSGMISS+V N IGS ++EDQ EE+SRSA ALFRAKEE+IERKKMEMR+KVEA LGRA
Sbjct: 16 VKNSGMISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEEIERKKMEMREKVEARLGRA 75

Query: 61 EEAMKRLTEIRE 72
          EEA KRL EIRE
Sbjct: 76 EEATKRLAEIRE 87

[Close]

BLAST of Lcy09g016830 vs. ExPASy TrEMBL
Match: A0A1S3CFV6 (RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103500274 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.1e-18
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MKNSGMISSHV-NAIGSLVREDQVEELSRSAFALFRAKEEKIERKKMEMRDKVEAHLGRA 60
          +KNSGMISS+V N IGS ++EDQ EE+SRSA ALFRAKEE+IERKKMEMR+KVEA LGRA
Sbjct: 16 VKNSGMISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEEIERKKMEMREKVEARLGRA 75

Query: 61 EEAMKRLTEIRE 72
          EEA KRL EIRE
Sbjct: 76 EEATKRLAEIRE 87

[Close]

BLAST of Lcy09g016830 vs. ExPASy TrEMBL
Match: A0A0A0LY59 (RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_1G153510 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-17
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MKNSGMISSHVN--AIGSLVREDQVEELSRSAFALFRAKEEKIERKKMEMRDKVEAHLGR 60
          +KNSGMISS+VN   IGS ++EDQ EE+SRSA ALFRAKEE+IERKKMEMR+KVEA LGR
Sbjct: 16 VKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEIERKKMEMREKVEARLGR 75

Query: 61 AEEAMKRLTEIRE 72
          AEEA KRL EIRE
Sbjct: 76 AEEATKRLAEIRE 88

[Close]

BLAST of Lcy09g016830 vs. ExPASy TrEMBL
Match: A0A5N5N3I5 (RAB6-interacting golgin OS=Salix brachista OX=2182728 GN=DKX38_006505 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.2e-14
Identity = 48/71 (67.61%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1  MKNSGMISSHVNAIGSLVREDQVEELSRSAFALFRAKEEKIERKKMEMRDKVEAHLGRAE 60
          MKNSG+IS++  +   L+R+D+ EE+SRSA A+FRAKEE+IE+KKME+RDKV AHLGR E
Sbjct: 20 MKNSGVISNYNES--PLLRDDKDEEMSRSALAMFRAKEEEIEKKKMEVRDKVHAHLGRVE 79

Query: 61 EAMKRLTEIRE 72
          EA KRL EIRE
Sbjct: 80 EATKRLAEIRE 88

[Close]

BLAST of Lcy09g016830 vs. NCBI nr
Match: XP_022142637.1 (uncharacterized protein LOC111012700 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 2.7e-19
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MKNSGMISSHVNAIGSLVREDQVEELSRSAFALFRAKEEKIERKKMEMRDKVEAHLGRAE 60
          ++NSGMI SHVNAIGS ++EDQ EELSRSAFALFRAKEE+IERKKMEMRDKVEA LGRAE
Sbjct: 20 VRNSGMI-SHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAE 79

Query: 61 EAMKRLTEIRE 72
          EA KRL EIRE
Sbjct: 80 EATKRLAEIRE 89

[Close]

BLAST of Lcy09g016830 vs. NCBI nr
Match: XP_038893849.1 (uncharacterized protein LOC120082661 [Benincasa hispida])

HSP 1 Score: 100.9 bits (250), Expect = 5.0e-18
Identity = 58/72 (80.56%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MKNSG-MISSHVNAIGSLVREDQVEELSRSAFALFRAKEEKIERKKMEMRDKVEAHLGRA 60
          +KNSG MISS+VNAIGS V+EDQ EE+SRSA A+FRAKEE+IERKKMEMR+KVEA LGRA
Sbjct: 19 VKNSGVMISSNVNAIGSPVKEDQEEEISRSALAVFRAKEEEIERKKMEMREKVEARLGRA 78

Query: 61 EEAMKRLTEIRE 72
          EEA KRL EIRE
Sbjct: 79 EEATKRLAEIRE 90

[Close]

BLAST of Lcy09g016830 vs. NCBI nr
Match: XP_008461743.1 (PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo] >KAA0040914.1 putative DNA double-strand break repair Rad50 ATPase [Cucumis melo var. makuwa] >TYK10622.1 putative DNA double-strand break repair Rad50 ATPase [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-17
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MKNSGMISSHV-NAIGSLVREDQVEELSRSAFALFRAKEEKIERKKMEMRDKVEAHLGRA 60
          +KNSGMISS+V N IGS ++EDQ EE+SRSA ALFRAKEE+IERKKMEMR+KVEA LGRA
Sbjct: 16 VKNSGMISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEEIERKKMEMREKVEARLGRA 75

Query: 61 EEAMKRLTEIRE 72
          EEA KRL EIRE
Sbjct: 76 EEATKRLAEIRE 87

[Close]

BLAST of Lcy09g016830 vs. NCBI nr
Match: XP_004139478.1 (uncharacterized protein LOC101203874 [Cucumis sativus] >KGN64906.1 hypothetical protein Csa_022823 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 2.5e-17
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MKNSGMISSHVN--AIGSLVREDQVEELSRSAFALFRAKEEKIERKKMEMRDKVEAHLGR 60
          +KNSGMISS+VN   IGS ++EDQ EE+SRSA ALFRAKEE+IERKKMEMR+KVEA LGR
Sbjct: 16 VKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEIERKKMEMREKVEARLGR 75

Query: 61 AEEAMKRLTEIRE 72
          AEEA KRL EIRE
Sbjct: 76 AEEATKRLAEIRE 88

[Close]

BLAST of Lcy09g016830 vs. NCBI nr
Match: KAB5561548.1 (hypothetical protein DKX38_006505 [Salix brachista])

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 48/71 (67.61%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1  MKNSGMISSHVNAIGSLVREDQVEELSRSAFALFRAKEEKIERKKMEMRDKVEAHLGRAE 60
          MKNSG+IS++  +   L+R+D+ EE+SRSA A+FRAKEE+IE+KKME+RDKV AHLGR E
Sbjct: 20 MKNSGVISNYNES--PLLRDDKDEEMSRSALAMFRAKEEEIEKKKMEVRDKVHAHLGRVE 79

Query: 61 EAMKRLTEIRE 72
          EA KRL EIRE
Sbjct: 80 EATKRLAEIRE 88

[Close]

BLAST of Lcy09g016830 vs. TAIR 10
Match: AT2G27740.1 (Family of unknown function (DUF662) )

HSP 1 Score: 68.6 bits (166), Expect = 2.6e-12
Identity = 40/71 (56.34%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 1  MKNSGMISSHVNAIGSLVREDQVEELSRSAFALFRAKEEKIERKKMEMRDKVEAHLGRAE 60
          +K+SG IS +    GS + +++ EELS+SAFALF+AKE++IER+KME++D+V+  LG AE
Sbjct: 19 IKSSGNISMN----GSPMIDEKEEELSQSAFALFKAKEDEIERRKMEVKDRVQKKLGLAE 78

Query: 61 EAMKRLTEIRE 72
          EA +RL EIRE
Sbjct: 79 EATRRLAEIRE 85

[Close]

BLAST of Lcy09g016830 vs. TAIR 10
Match: AT3G09980.1 (Family of unknown function (DUF662) )

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-09
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 7  ISSHVNAIGSLVREDQVEELSRSAFALFRAKEEKIERKKMEMRDKVEAHLGRAEEAMKRL 66
          +S  ++    + +ED  EE+SR+A + FRAKEE+IE+KKME+R++V+A LGR EE  KRL
Sbjct: 28 LSGSMSFSSQMSKED--EEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLGRVEEETKRL 87

Query: 67 TEIRE 72
            IRE
Sbjct: 88 ALIRE 90

[Close]

BLAST of Lcy09g016830 vs. TAIR 10
Match: AT2G36410.2 (Family of unknown function (DUF662) )

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-08
Identity = 32/64 (50.00%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 8   SSHVNAIGSLVREDQVEELSRSAFALFRAKEEKIERKKMEMRDKVEAHLGRAEEAMKRLT 67
           SSH++      RED  EE++RSA + FRAKE++IE+++ME+R++++A LGR E+  KRL+
Sbjct: 50  SSHMS------RED--EEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVEQETKRLS 105

Query: 68  EIRE 72
            IRE
Sbjct: 110 TIRE 105

[Close]

BLAST of Lcy09g016830 vs. TAIR 10
Match: AT2G36410.1 (Family of unknown function (DUF662) )

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-08
Identity = 32/64 (50.00%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 8   SSHVNAIGSLVREDQVEELSRSAFALFRAKEEKIERKKMEMRDKVEAHLGRAEEAMKRLT 67
           SSH++      RED  EE++RSA + FRAKE++IE+++ME+R++++A LGR E+  KRL+
Sbjct: 50  SSHMS------RED--EEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVEQETKRLS 105

Query: 68  EIRE 72
            IRE
Sbjct: 110 TIRE 105

[Close]

BLAST of Lcy09g016830 vs. TAIR 10
Match: AT2G36410.3 (Family of unknown function (DUF662) )

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-08
Identity = 32/64 (50.00%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 8   SSHVNAIGSLVREDQVEELSRSAFALFRAKEEKIERKKMEMRDKVEAHLGRAEEAMKRLT 67
           SSH++      RED  EE++RSA + FRAKE++IE+++ME+R++++A LGR E+  KRL+
Sbjct: 50  SSHMS------RED--EEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVEQETKRLS 105

Query: 68  EIRE 72
            IRE
Sbjct: 110 TIRE 105

The following BLAST results are available for this feature:

BLAST of Lcy09g016830 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g016830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNF1	1.3e-19	84.51	RAB6-interacting golgin OS=Momordica charantia OX=3673 GN=LOC111012700 PE=3 SV=1	[more]
A0A5D3CH78	7.1e-18	79.17	RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CFV6	7.1e-18	79.17	RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103500274 PE=3 SV=1	[more]
A0A0A0LY59	1.2e-17	78.08	RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_1G153510 PE=3 SV=1	[more]
A0A5N5N3I5	6.2e-14	67.61	RAB6-interacting golgin OS=Salix brachista OX=2182728 GN=DKX38_006505 PE=3 SV=1	[more]

BLAST of Lcy09g016830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142637.1	2.7e-19	84.51	uncharacterized protein LOC111012700 [Momordica charantia]	[more]
XP_038893849.1	5.0e-18	80.56	uncharacterized protein LOC120082661 [Benincasa hispida]	[more]
XP_008461743.1	1.5e-17	79.17	PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo] >...	[more]
XP_004139478.1	2.5e-17	78.08	uncharacterized protein LOC101203874 [Cucumis sativus] >KGN64906.1 hypothetical ...	[more]
KAB5561548.1	1.3e-13	67.61	hypothetical protein DKX38_006505 [Salix brachista]	[more]

BLAST of Lcy09g016830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27740.1	2.6e-12	56.34	Family of unknown function (DUF662)	[more]
AT3G09980.1	1.6e-09	52.31	Family of unknown function (DUF662)	[more]
AT2G36410.2	1.3e-08	50.00	Family of unknown function (DUF662)	[more]
AT2G36410.1	1.3e-08	50.00	Family of unknown function (DUF662)	[more]
AT2G36410.3	1.3e-08	50.00	Family of unknown function (DUF662)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 49..69
None	No IPR available	PANTHER	PTHR21470:SF10	ANKYRIN REPEAT 30A-LIKE PROTEIN (DUF662)	coord: 13..71
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 10..71 e-value: 9.5E-19 score: 67.8
IPR007033	RAB6-interacting golgin	PANTHER	PTHR21470	RAB6-INTERACTING PROTEIN GORAB	coord: 13..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g016830.1	Lcy09g016830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005794	Golgi apparatus