Lcy09g016800 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g016800
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	CCHC-type domain-containing protein
Location	Chr09: 30605090 .. 30605626 (+)
RNA-Seq Expression	Lcy09g016800
Synteny	Lcy09g016800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAACGATTGGGCAACGCAATTGGATCGTTTGAGGATGTGGATAGCAAAAATTGTTTCCATTTTTGGGGAGTGACTCTTCGTGTAAGAGTTCGCATTGACATTTCACGTCCACTTAGGCGAGGAGTCAAGATCAATCTGGACGGCCCAATGTTCGGTAGCTGGATTCCTATTCGGTATGAGCGTTTACCAGAATTTTGCTCATTTTGTGGCATTATTGGCCATATATCAAGGGATTGTGGAGATTTTTACAAATTTACTACAGCCAATAGCTCAGCCCCTCAGTATGGAGAATGGTTACGTTACGGAGGAAGGGGGGATATGATTGCTCGGTCGTCGGCGAAGGATTTAAGGCTCGACTCCAGTGCTCCTTCTTCTCCGGTGAATCAACTACTATCTCAATCCCCTGTGGCTATGGATATCGGAACGTCTAACGACTCCCCTTTACTCACGCCACGAGGTTTCAGTCGATCAGGATTTTCTTTGACTGACAGAAGAAAGAGCTTCCCAGAATCTTCTCAACCGGCATTTTAA

mRNA sequence

ATGGCGGAACGATTGGGCAACGCAATTGGATCGTTTGAGGATGTGGATAGCAAAAATTGTTTCCATTTTTGGGGAGTGACTCTTCGTGTAAGAGTTCGCATTGACATTTCACGTCCACTTAGGCGAGGAGTCAAGATCAATCTGGACGGCCCAATGTTCGGTAGCTGGATTCCTATTCGGTATGAGCGTTTACCAGAATTTTGCTCATTTTGTGGCATTATTGGCCATATATCAAGGGATTGTGGAGATTTTTACAAATTTACTACAGCCAATAGCTCAGCCCCTCAGTATGGAGAATGGTTACGTTACGGAGGAAGGGGGGATATGATTGCTCGGTCGTCGGCGAAGGATTTAAGGCTCGACTCCAGTGCTCCTTCTTCTCCGGTGAATCAACTACTATCTCAATCCCCTGTGGCTATGGATATCGGAACGTCTAACGACTCCCCTTTACTCACGCCACGAGGTTTCAGTCGATCAGGATTTTCTTTGACTGACAGAAGAAAGAGCTTCCCAGAATCTTCTCAACCGGCATTTTAA

Coding sequence (CDS)

ATGGCGGAACGATTGGGCAACGCAATTGGATCGTTTGAGGATGTGGATAGCAAAAATTGTTTCCATTTTTGGGGAGTGACTCTTCGTGTAAGAGTTCGCATTGACATTTCACGTCCACTTAGGCGAGGAGTCAAGATCAATCTGGACGGCCCAATGTTCGGTAGCTGGATTCCTATTCGGTATGAGCGTTTACCAGAATTTTGCTCATTTTGTGGCATTATTGGCCATATATCAAGGGATTGTGGAGATTTTTACAAATTTACTACAGCCAATAGCTCAGCCCCTCAGTATGGAGAATGGTTACGTTACGGAGGAAGGGGGGATATGATTGCTCGGTCGTCGGCGAAGGATTTAAGGCTCGACTCCAGTGCTCCTTCTTCTCCGGTGAATCAACTACTATCTCAATCCCCTGTGGCTATGGATATCGGAACGTCTAACGACTCCCCTTTACTCACGCCACGAGGTTTCAGTCGATCAGGATTTTCTTTGACTGACAGAAGAAAGAGCTTCCCAGAATCTTCTCAACCGGCATTTTAA

Protein sequence

MAERLGNAIGSFEDVDSKNCFHFWGVTLRVRVRIDISRPLRRGVKINLDGPMFGSWIPIRYERLPEFCSFCGIIGHISRDCGDFYKFTTANSSAPQYGEWLRYGGRGDMIARSSAKDLRLDSSAPSSPVNQLLSQSPVAMDIGTSNDSPLLTPRGFSRSGFSLTDRRKSFPESSQPAF

Homology

[Close]

BLAST of Lcy09g016800 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.7e-30
Identity = 71/130 (54.62%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 1   MAERLGNAIGSFEDVDSKNCFHFWGVTLRVRVRIDISRPLRRGVKINLDGPMFGSWIPIR 60
           MA RLGNAIG+F DVD       WG +LR+RV IDI++PLRRG+KIN+DGPM G WIPI+
Sbjct: 144 MAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQ 203

Query: 61  YERLPEFCSFCGIIGHISRDCGDFYKFTTANSSA-PQYGEWLRYGG--RGDMIARSSAKD 120
           YERLP+FC FCG+IGH S DC   Y     +S A  +YG WLR+ G   G    R     
Sbjct: 204 YERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSEYGPWLRFVGSKAGAQKGRKGKSP 263

Query: 121 LRLDSSAPSS 128
            R DS   SS
Sbjct: 264 AREDSCGSSS 273

[Close]

BLAST of Lcy09g016800 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.3e-26
Identity = 60/105 (57.14%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 1   MAERLGNAIGSFEDVDSKNCFHFWGVTLRVRVRIDISRPLRRGVKINLDGPMFGSWIPIR 60
           MA RLGNAIG FEDV+S      WG  LRVRVR D+ +PL RG+K+NLDGPM G WIPI+
Sbjct: 145 MATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQ 204

Query: 61  YERLPEFCSFCGIIGHISRDCGDFYKFTTANSSAPQYGEWLRYGG 106
           YERLP+F   CG + HI +DC D      + S   QYG WLR+ G
Sbjct: 205 YERLPDFRYHCGRLDHILKDCSDC--CVDSVSKNLQYGPWLRFQG 247

[Close]

BLAST of Lcy09g016800 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.5e-23
Identity = 65/167 (38.92%), Postives = 92/167 (55.09%), Query Frame = 0


Query: 1   MAERLGNAIGSFEDVDSKNCFHFWGVTLRVRVRIDISRPLRRGVKINLDGPMFGSWIPIR 60
           MA RLGNA+G FE+ D  +    WG  LRVRV +DIS+PLRRG+K+NLDGP+ G+WIPI+
Sbjct: 145 MAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAWIPIQ 204

Query: 61  YERLPEFCSFCGIIGHISRDCGDFYKFTTANSSAPQYGEWLRYGG------------RGD 120
           YERLP+FC  CG+               +++    QYG WLRY G            + D
Sbjct: 205 YERLPDFCYHCGL---------------SSSRKKHQYGSWLRYQGTVKPTMPQMKQPQED 264

Query: 121 MIARSSAKDLRLDSSAPSSPVNQLLSQSPVAMDIGTSNDSPLL-TPR 155
           ++ +S        S++P    +Q +  +P    I    +SP+  TP+
Sbjct: 265 LLDKSGNNSFS-SSTSPVGAGSQGVQSAPATGPIAIPMESPVTETPK 295

[Close]

BLAST of Lcy09g016800 vs. ExPASy TrEMBL
Match: A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.3e-18
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 1   MAERLGNAIGSFEDVDSKNCFHFWGVTLRVRVRIDISRPLRRGVKI-NLDGPMFGSWIPI 60
           MA  LG  +G  E+++      + G  +RVRV+ID+S+PLRRG+K+ N DG     W P+
Sbjct: 141 MANILGAKLGDVEEIEGDGADGWAGPFIRVRVKIDVSKPLRRGIKLKNSDGK--DIWCPL 200

Query: 61  RYERLPEFCSFCGIIGHISRDCGDFYKFTTANSSAPQYGEWLR 103
           RYE+LP+FC  CG IGH  R+C    K  T N S  QYG+WLR
Sbjct: 201 RYEKLPDFCYECGKIGHSGRECEQRSKVVTTN-SPEQYGDWLR 240

[Close]

BLAST of Lcy09g016800 vs. ExPASy TrEMBL
Match: A0A7N2L6E7 (CCHC-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.0e-16
Identity = 48/119 (40.34%), Postives = 74/119 (62.18%), Query Frame = 0


Query: 5   LGNAIGSFEDVDSKNCFHFWGVTLRVRVRIDISRPLRRGVK-INLDGPMFGSWIPIRYER 64
           +GN++G F ++D ++C     + +R+RV + I +PLRRG   ++LDG  F  W+  +YER
Sbjct: 146 VGNSLGRFLEMDKRHCQSDQALFMRIRVELPIEKPLRRGGNVVSLDGEKF--WVSFKYER 205

Query: 65  LPEFCSFCGIIGHISRDCGDFYKFTTANSSAPQYGEWLRYGG--RGDMI-ARSSAKDLR 120
           LP FC  CG +GH  + C DF  +    S+  QYGEWL+ GG  +G+    RS+++D R
Sbjct: 206 LPTFCFLCGKLGHDDKHCLDFPNW---QSTPKQYGEWLKAGGVFKGNSSQQRSNSRDRR 259

[Close]

BLAST of Lcy09g016800 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 142.5 bits (358), Expect = 3.5e-30
Identity = 71/130 (54.62%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 1   MAERLGNAIGSFEDVDSKNCFHFWGVTLRVRVRIDISRPLRRGVKINLDGPMFGSWIPIR 60
           MA RLGNAIG+F DVD       WG +LR+RV IDI++PLRRG+KIN+DGPM G WIPI+
Sbjct: 144 MAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQ 203

Query: 61  YERLPEFCSFCGIIGHISRDCGDFYKFTTANSSA-PQYGEWLRYGG--RGDMIARSSAKD 120
           YERLP+FC FCG+IGH S DC   Y     +S A  +YG WLR+ G   G    R     
Sbjct: 204 YERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSEYGPWLRFVGSKAGAQKGRKGKSP 263

Query: 121 LRLDSSAPSS 128
            R DS   SS
Sbjct: 264 AREDSCGSSS 273

[Close]

BLAST of Lcy09g016800 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-25
Identity = 60/105 (57.14%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 1   MAERLGNAIGSFEDVDSKNCFHFWGVTLRVRVRIDISRPLRRGVKINLDGPMFGSWIPIR 60
           MA RLGNAIG FEDV+S      WG  LRVRVR D+ +PL RG+K+NLDGPM G WIPI+
Sbjct: 145 MATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQ 204

Query: 61  YERLPEFCSFCGIIGHISRDCGDFYKFTTANSSAPQYGEWLRYGG 106
           YERLP+F   CG + HI +DC D      + S   QYG WLR+ G
Sbjct: 205 YERLPDFRYHCGRLDHILKDCSDC--CVDSVSKNLQYGPWLRFQG 247

[Close]

BLAST of Lcy09g016800 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 9.2e-23
Identity = 65/167 (38.92%), Postives = 92/167 (55.09%), Query Frame = 0


Query: 1   MAERLGNAIGSFEDVDSKNCFHFWGVTLRVRVRIDISRPLRRGVKINLDGPMFGSWIPIR 60
           MA RLGNA+G FE+ D  +    WG  LRVRV +DIS+PLRRG+K+NLDGP+ G+WIPI+
Sbjct: 145 MAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAWIPIQ 204

Query: 61  YERLPEFCSFCGIIGHISRDCGDFYKFTTANSSAPQYGEWLRYGG------------RGD 120
           YERLP+FC  CG+               +++    QYG WLRY G            + D
Sbjct: 205 YERLPDFCYHCGL---------------SSSRKKHQYGSWLRYQGTVKPTMPQMKQPQED 264

Query: 121 MIARSSAKDLRLDSSAPSSPVNQLLSQSPVAMDIGTSNDSPLL-TPR 155
           ++ +S        S++P    +Q +  +P    I    +SP+  TP+
Sbjct: 265 LLDKSGNNSFS-SSTSPVGAGSQGVQSAPATGPIAIPMESPVTETPK 295

[Close]

BLAST of Lcy09g016800 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 8.9e-18
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 1   MAERLGNAIGSFEDVDSKNCFHFWGVTLRVRVRIDISRPLRRGVKI-NLDGPMFGSWIPI 60
           MA  LG  +G  E+++      + G  +RVRV+ID+S+PLRRG+K+ N DG     W P+
Sbjct: 141 MANILGAKLGDVEEIEGDGADGWAGPFIRVRVKIDVSKPLRRGIKLKNSDGK--DIWCPL 200

Query: 61  RYERLPEFCSFCGIIGHISRDCGDFYKFTTANSSAPQYGEWLR 103
           RYE+LP+FC  CG IGH  R+C    K  T N S  QYG+WLR
Sbjct: 201 RYEKLPDFCYECGKIGHSGRECEQRSKVVTTN-SPEQYGDWLR 240

[Close]

BLAST of Lcy09g016800 vs. NCBI nr
Match: XP_028122006.1 (uncharacterized protein LOC114319195 [Camellia sinensis])

HSP 1 Score: 99.8 bits (247), Expect = 2.6e-17
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 1   MAERLGNAIGSFEDVDSKNCFHFWGVTLRVRVRIDISRPLRRGVKINLDGPMFGSWIPIR 60
           + E +GNA+G F D+D ++    WG T+R+RV +D+ +PLRRG+K+ L       W+  +
Sbjct: 142 VGEIVGNAVGQFIDMDYEDGGIVWGRTMRIRVALDVRKPLRRGMKLALSSAE-PIWVDFK 201

Query: 61  YERLPEFCSFCGIIGHISRDCGDFYKFTTANSS---APQYGEWLR 103
           YERLP +C FCG +GH  R+C D  K ++A+ S   + QYG WLR
Sbjct: 202 YERLPIYCYFCGRLGHSERECDD--KLSSADGSRVDSLQYGAWLR 243

The following BLAST results are available for this feature:

BLAST of Lcy09g016800 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g016800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU55	1.7e-30	54.62	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1BSZ1	7.3e-26	57.14	uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1DX30	4.5e-23	38.92	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1D765	4.3e-18	47.57	uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A7N2L6E7	4.0e-16	40.34	CCHC-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Lcy09g016800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156185.1	3.5e-30	54.62	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
XP_022132681.1	1.5e-25	57.14	uncharacterized protein LOC111005481 [Momordica charantia]	[more]
XP_022158377.1	9.2e-23	38.92	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_022149484.1	8.9e-18	47.57	uncharacterized protein LOC111017902 [Momordica charantia]	[more]
XP_028122006.1	2.6e-17	43.81	uncharacterized protein LOC114319195 [Camellia sinensis]	[more]

BLAST of Lcy09g016800 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 34..81 e-value: 5.4E-13 score: 48.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..178
None	No IPR available	PANTHER	PTHR31286:SF84	SUBFAMILY NOT NAMED	coord: 2..108
IPR040256	Uncharacterized protein At4g02000-like	PANTHER	PTHR31286	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE	coord: 2..108
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 68..81 score: 8.680233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g016800.1	Lcy09g016800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding