Lcy09g016700 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g016700
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	CCHC-type domain-containing protein
Location	Chr09: 30186981 .. 30187598 (-)
RNA-Seq Expression	Lcy09g016700
Synteny	Lcy09g016700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAAATGTCGACTCACCTGGATCATTGCATCATAGGAAAACTCCTGTCAAGCCGTATAATCTCCCCGATTGCCATCAAGAATGCGCTTAAGGGGGCCTGGAAAACAAGAAGAAATTTTAATGTTGAATCATCAGGGAGAAACATCTTCAACTTCAAGTTTGAATGTCAGGGGGATAGAGATTGGGTTCTAGATAACGGACCCTGGACATTTGATAAATATCTAATTGTTCTGGAACTTCCAACTGCAAATCAAAGAGCGATGGAGATGGAATTCAAGAAGGCTGATTTTTGGATAAGGCTTATCAACTTGCCAACGGGATATAGAAACAGAAAGGTGGTAAGGAAGATTGGTAATAGCATTGGAGAATTCTTGGAAGTTGGAGATGGGAATGAGGAAATAAGCTGGGGAAACAGTATTCCAATAAGAGTAAGACTGGACATTACATTACCTTTGCTGAGAGGCTTCATGCTTAAGGCTCCGAGAGTCCAAGGAAACTGTTGGGTGACAATTCATTATGAGAGACTCCCAGAATTTTGTTTCTTGTGTGCCAGAATAGGACACATAGCAAAAGAGTGTGAATTGGACAAAGAGGAAAGGACGAACAAAGCATAG

mRNA sequence

ATGAATGAAATGTCGACTCACCTGGATCATTGCATCATAGGAAAACTCCTGTCAAGCCGTATAATCTCCCCGATTGCCATCAAGAATGCGCTTAAGGGGGCCTGGAAAACAAGAAGAAATTTTAATGTTGAATCATCAGGGAGAAACATCTTCAACTTCAAGTTTGAATGTCAGGGGGATAGAGATTGGGTTCTAGATAACGGACCCTGGACATTTGATAAATATCTAATTGTTCTGGAACTTCCAACTGCAAATCAAAGAGCGATGGAGATGGAATTCAAGAAGGCTGATTTTTGGATAAGGCTTATCAACTTGCCAACGGGATATAGAAACAGAAAGGTGGTAAGGAAGATTGGTAATAGCATTGGAGAATTCTTGGAAGTTGGAGATGGGAATGAGGAAATAAGCTGGGGAAACAGTATTCCAATAAGAGTAAGACTGGACATTACATTACCTTTGCTGAGAGGCTTCATGCTTAAGGCTCCGAGAGTCCAAGGAAACTGTTGGGTGACAATTCATTATGAGAGACTCCCAGAATTTTGTTTCTTGTGTGCCAGAATAGGACACATAGCAAAAGAGTGTGAATTGGACAAAGAGGAAAGGACGAACAAAGCATAG

Coding sequence (CDS)

ATGAATGAAATGTCGACTCACCTGGATCATTGCATCATAGGAAAACTCCTGTCAAGCCGTATAATCTCCCCGATTGCCATCAAGAATGCGCTTAAGGGGGCCTGGAAAACAAGAAGAAATTTTAATGTTGAATCATCAGGGAGAAACATCTTCAACTTCAAGTTTGAATGTCAGGGGGATAGAGATTGGGTTCTAGATAACGGACCCTGGACATTTGATAAATATCTAATTGTTCTGGAACTTCCAACTGCAAATCAAAGAGCGATGGAGATGGAATTCAAGAAGGCTGATTTTTGGATAAGGCTTATCAACTTGCCAACGGGATATAGAAACAGAAAGGTGGTAAGGAAGATTGGTAATAGCATTGGAGAATTCTTGGAAGTTGGAGATGGGAATGAGGAAATAAGCTGGGGAAACAGTATTCCAATAAGAGTAAGACTGGACATTACATTACCTTTGCTGAGAGGCTTCATGCTTAAGGCTCCGAGAGTCCAAGGAAACTGTTGGGTGACAATTCATTATGAGAGACTCCCAGAATTTTGTTTCTTGTGTGCCAGAATAGGACACATAGCAAAAGAGTGTGAATTGGACAAAGAGGAAAGGACGAACAAAGCATAG

Protein sequence

MNEMSTHLDHCIIGKLLSSRIISPIAIKNALKGAWKTRRNFNVESSGRNIFNFKFECQGDRDWVLDNGPWTFDKYLIVLELPTANQRAMEMEFKKADFWIRLINLPTGYRNRKVVRKIGNSIGEFLEVGDGNEEISWGNSIPIRVRLDITLPLLRGFMLKAPRVQGNCWVTIHYERLPEFCFLCARIGHIAKECELDKEERTNKA

Homology

[Close]

BLAST of Lcy09g016700 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-41
Identity = 80/188 (42.55%), Postives = 115/188 (61.17%), Query Frame = 0


Query: 8   LDHCIIGKLLSSRIISPIAIKNALKGAWKTRRNFNVESSGRNIFNFKFECQGDRDWVLDN 67
           L + ++GKLL+ RIIS   +   L  AWK      VES G+N+F F F  + D + V+  
Sbjct: 38  LAYSLVGKLLAKRIISADVLSRVLLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKT 97

Query: 68  GPWTFDKYLIVLELPTANQRAMEMEFKKADFWIRLINLPTGYRNRKVVRKIGNSIGEFLE 127
           GPW FDK LIVL+ P +++   E+EF +  FWI L +LP  + N+ +  ++GN+IG F++
Sbjct: 98  GPWFFDKALIVLQKPCSSKNISELEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVD 157

Query: 128 VGDGNEEISWGNSIPIRVRLDITLPLLRGFMLKAPRVQGNCWVTIHYERLPEFCFLCARI 187
           V    +  SWG S+ IRV +DIT PL RG  +      G CW+ I YERLP+FC+ C  I
Sbjct: 158 VDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVI 217

Query: 188 GHIAKECE 196
           GH + +C+
Sbjct: 218 GHSSHDCD 225

[Close]

BLAST of Lcy09g016700 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 4.0e-36
Identity = 74/188 (39.36%), Postives = 109/188 (57.98%), Query Frame = 0


Query: 8   LDHCIIGKLLSSRIISPIAIKNALKGAWKTR-RNFNVESSGRNIFNFKFECQGDRDWVLD 67
           L+  +I KLLS R IS   +KN LK AWK   + F+V+  G NIF F F    DR+ +L 
Sbjct: 38  LELSLICKLLSKRSISCTVLKNTLKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILR 97

Query: 68  NGPWTFDKYLIVLELPTANQRAMEMEFKKADFWIRLINLPTGYRNRKVVRKIGNSIGEFL 127
            GPWTFD+ LI+++ P +  + ++M+F+    W+   +L     N+ +  ++GN+IG F 
Sbjct: 98  MGPWTFDRALIIIDNPVSLTKPLDMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFE 157

Query: 128 EVGDGNEEISWGNSIPIRVRLDITLPLLRGFMLKAPRVQGNCWVTIHYERLPEFCFLCAR 187
           +V        WG+ + +RVR D+  PL RG  L      G CW+ I YERLP+F + C R
Sbjct: 158 DVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGR 217

Query: 188 IGHIAKEC 195
           + HI K+C
Sbjct: 218 LDHILKDC 225

[Close]

BLAST of Lcy09g016700 vs. ExPASy TrEMBL
Match: A0A5C7IJL3 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_004194 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 6.5e-34
Identity = 69/187 (36.90%), Postives = 106/187 (56.68%), Query Frame = 0


Query: 8   LDHCIIGKLLSSRIISPIAIKNALKGAWKTRRNFNVESSGRNIFNFKFECQGDRDWVLDN 67
           +DHC++GK+LS + ++  A  + ++  W       +ES G N+F F F+   DR  V   
Sbjct: 115 VDHCLVGKVLSGKRVNREAFISVIEHLWNPFGKVEIESVGENVFMFHFQNPEDRSRVWQR 174

Query: 68  GPWTFDKYLIVLELPTANQRAMEMEFKKADFWIRLINLPTGYRNRKVVRKIGNSIGEFLE 127
           GPW FDK LIVLE+P       ++ F KADFW+++ ++P    NR+  + +   IGE +E
Sbjct: 175 GPWHFDKSLIVLEMPEGTGEIAKLRFNKADFWVQIHDIPIMCMNRRSAKWLAEQIGEVIE 234

Query: 128 VGDGNEEISWGNSIPIRVRLDITLPLLRGFMLKAPRVQGNCWVTIHYERLPEFCFLCARI 187
           +   + +  WG  + ++VR+DI+ PL R   L   +      V + YER+PEFCF C R+
Sbjct: 235 IPSESRD-CWGKFLRVKVRIDISRPLKRWLRLSLDKSGNVVVVGLKYERMPEFCFACGRV 294

Query: 188 GHIAKEC 195
           GH   EC
Sbjct: 295 GHGINEC 300

[Close]

BLAST of Lcy09g016700 vs. ExPASy TrEMBL
Match: A0A314YVX1 (CCHC-type domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_17609 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 8.4e-34
Identity = 78/195 (40.00%), Postives = 112/195 (57.44%), Query Frame = 0


Query: 1   MNEMSTHLDHCIIGKLLSSRIISPIAIKNALKGAWKTRRNFNVESSGRNIFNFKFECQGD 60
           ++++   L   ++GK+ ++   +  A K  +   W T R   V+  G N+F F F  +GD
Sbjct: 29  IDDVGERLKMSLVGKVFTTNGFNREAFKQTMLKIWNTAREVVVKDLGENLFLFIFATEGD 88

Query: 61  RDWVLDNGPWTFDKYLIVLELPTANQRAMEMEFKKADFWIRLINLPTGYRNRKVVRKIGN 120
           R  VL +GPW FDK L++LE+P       +M  K ADFWI++ N+P       + R+IGN
Sbjct: 89  RLKVLRSGPWNFDKALVLLEVPDGRVAPSKMHLKYADFWIQIHNVPLCCMTTNMGRQIGN 148

Query: 121 SIGEFLEVGDGNEEISWGNSIPIRVRLDITLPLLRGFMLKAPRVQGNC-WVTIHYERLPE 180
           S+G  L+V +G +    G  + IRV LD++ PL RG  L  P   GN  +V   YERLPE
Sbjct: 149 SLGRCLDVLEGMDGGCLGRFLRIRVCLDVSKPLWRGKKLTLP--SGNTEFVDFRYERLPE 208

Query: 181 FCFLCARIGHIAKEC 195
           FCF C R+GH+ KEC
Sbjct: 209 FCFCCGRVGHVFKEC 221

[Close]

BLAST of Lcy09g016700 vs. ExPASy TrEMBL
Match: A0A5E4G034 (PREDICTED: DUF4283 domain-containing OS=Prunus dulcis OX=3755 GN=ALMOND_2B021569 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.2e-33
Identity = 76/195 (38.97%), Postives = 113/195 (57.95%), Query Frame = 0


Query: 1   MNEMSTHLDHCIIGKLLSSRIISPIAIKNALKGAWKTRRNFNVESSGRNIFNFKFECQGD 60
           ++++   L   ++GK+L++   +  A K  +   W T R   V+  G N+F F F  +GD
Sbjct: 29  IDDVGERLKMSLVGKVLTTTAFNREAFKQTMLKIWSTVREVVVKDIGENLFLFIFATEGD 88

Query: 61  RDWVLDNGPWTFDKYLIVLELPTANQRAMEMEFKKADFWIRLINLPTGYRNRKVVRKIGN 120
           R  VL +GPW FDK L++LE P  +    +M  K ADFWI++ N+P    +  + R+IGN
Sbjct: 89  RLRVLRSGPWNFDKALVLLETPDGSIAPSKMLLKYADFWIQVHNVPLSCMSTNLGRQIGN 148

Query: 121 SIGEFLEVGDGNEEISWGNSIPIRVRLDITLPLLRGFMLKAPRVQGN-CWVTIHYERLPE 180
           S G  L+V +G +    G  + +RV +D++ PL RG  +  P   GN  +V   YERLPE
Sbjct: 149 SFGRCLDVIEGMDGKCLGRFLRLRVSVDVSKPLRRGKKMTLP--SGNTVFVEFRYERLPE 208

Query: 181 FCFLCARIGHIAKEC 195
           FCF C R+GH+ KEC
Sbjct: 209 FCFCCGRLGHVFKEC 221

[Close]

BLAST of Lcy09g016700 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 179.5 bits (454), Expect = 3.0e-41
Identity = 80/188 (42.55%), Postives = 115/188 (61.17%), Query Frame = 0


Query: 8   LDHCIIGKLLSSRIISPIAIKNALKGAWKTRRNFNVESSGRNIFNFKFECQGDRDWVLDN 67
           L + ++GKLL+ RIIS   +   L  AWK      VES G+N+F F F  + D + V+  
Sbjct: 38  LAYSLVGKLLAKRIISADVLSRVLLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKT 97

Query: 68  GPWTFDKYLIVLELPTANQRAMEMEFKKADFWIRLINLPTGYRNRKVVRKIGNSIGEFLE 127
           GPW FDK LIVL+ P +++   E+EF +  FWI L +LP  + N+ +  ++GN+IG F++
Sbjct: 98  GPWFFDKALIVLQKPCSSKNISELEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVD 157

Query: 128 VGDGNEEISWGNSIPIRVRLDITLPLLRGFMLKAPRVQGNCWVTIHYERLPEFCFLCARI 187
           V    +  SWG S+ IRV +DIT PL RG  +      G CW+ I YERLP+FC+ C  I
Sbjct: 158 VDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVI 217

Query: 188 GHIAKECE 196
           GH + +C+
Sbjct: 218 GHSSHDCD 225

[Close]

BLAST of Lcy09g016700 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 161.4 bits (407), Expect = 8.4e-36
Identity = 74/188 (39.36%), Postives = 109/188 (57.98%), Query Frame = 0


Query: 8   LDHCIIGKLLSSRIISPIAIKNALKGAWKTR-RNFNVESSGRNIFNFKFECQGDRDWVLD 67
           L+  +I KLLS R IS   +KN LK AWK   + F+V+  G NIF F F    DR+ +L 
Sbjct: 38  LELSLICKLLSKRSISCTVLKNTLKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILR 97

Query: 68  NGPWTFDKYLIVLELPTANQRAMEMEFKKADFWIRLINLPTGYRNRKVVRKIGNSIGEFL 127
            GPWTFD+ LI+++ P +  + ++M+F+    W+   +L     N+ +  ++GN+IG F 
Sbjct: 98  MGPWTFDRALIIIDNPVSLTKPLDMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFE 157

Query: 128 EVGDGNEEISWGNSIPIRVRLDITLPLLRGFMLKAPRVQGNCWVTIHYERLPEFCFLCAR 187
           +V        WG+ + +RVR D+  PL RG  L      G CW+ I YERLP+F + C R
Sbjct: 158 DVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGR 217

Query: 188 IGHIAKEC 195
           + HI K+C
Sbjct: 218 LDHILKDC 225

[Close]

BLAST of Lcy09g016700 vs. NCBI nr
Match: TXG69259.1 (hypothetical protein EZV62_004194 [Acer yangbiense])

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-33
Identity = 69/187 (36.90%), Postives = 106/187 (56.68%), Query Frame = 0


Query: 8   LDHCIIGKLLSSRIISPIAIKNALKGAWKTRRNFNVESSGRNIFNFKFECQGDRDWVLDN 67
           +DHC++GK+LS + ++  A  + ++  W       +ES G N+F F F+   DR  V   
Sbjct: 115 VDHCLVGKVLSGKRVNREAFISVIEHLWNPFGKVEIESVGENVFMFHFQNPEDRSRVWQR 174

Query: 68  GPWTFDKYLIVLELPTANQRAMEMEFKKADFWIRLINLPTGYRNRKVVRKIGNSIGEFLE 127
           GPW FDK LIVLE+P       ++ F KADFW+++ ++P    NR+  + +   IGE +E
Sbjct: 175 GPWHFDKSLIVLEMPEGTGEIAKLRFNKADFWVQIHDIPIMCMNRRSAKWLAEQIGEVIE 234

Query: 128 VGDGNEEISWGNSIPIRVRLDITLPLLRGFMLKAPRVQGNCWVTIHYERLPEFCFLCARI 187
           +   + +  WG  + ++VR+DI+ PL R   L   +      V + YER+PEFCF C R+
Sbjct: 235 IPSESRD-CWGKFLRVKVRIDISRPLKRWLRLSLDKSGNVVVVGLKYERMPEFCFACGRV 294

Query: 188 GHIAKEC 195
           GH   EC
Sbjct: 295 GHGINEC 300

[Close]

BLAST of Lcy09g016700 vs. NCBI nr
Match: PQQ10307.1 (uncharacterized protein Pyn_17609 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 153.7 bits (387), Expect = 1.7e-33
Identity = 78/195 (40.00%), Postives = 112/195 (57.44%), Query Frame = 0


Query: 1   MNEMSTHLDHCIIGKLLSSRIISPIAIKNALKGAWKTRRNFNVESSGRNIFNFKFECQGD 60
           ++++   L   ++GK+ ++   +  A K  +   W T R   V+  G N+F F F  +GD
Sbjct: 29  IDDVGERLKMSLVGKVFTTNGFNREAFKQTMLKIWNTAREVVVKDLGENLFLFIFATEGD 88

Query: 61  RDWVLDNGPWTFDKYLIVLELPTANQRAMEMEFKKADFWIRLINLPTGYRNRKVVRKIGN 120
           R  VL +GPW FDK L++LE+P       +M  K ADFWI++ N+P       + R+IGN
Sbjct: 89  RLKVLRSGPWNFDKALVLLEVPDGRVAPSKMHLKYADFWIQIHNVPLCCMTTNMGRQIGN 148

Query: 121 SIGEFLEVGDGNEEISWGNSIPIRVRLDITLPLLRGFMLKAPRVQGNC-WVTIHYERLPE 180
           S+G  L+V +G +    G  + IRV LD++ PL RG  L  P   GN  +V   YERLPE
Sbjct: 149 SLGRCLDVLEGMDGGCLGRFLRIRVCLDVSKPLWRGKKLTLP--SGNTEFVDFRYERLPE 208

Query: 181 FCFLCARIGHIAKEC 195
           FCF C R+GH+ KEC
Sbjct: 209 FCFCCGRVGHVFKEC 221

[Close]

BLAST of Lcy09g016700 vs. NCBI nr
Match: XP_028122006.1 (uncharacterized protein LOC114319195 [Camellia sinensis])

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-33
Identity = 70/187 (37.43%), Postives = 108/187 (57.75%), Query Frame = 0


Query: 9   DHCIIGKLLSSRIISPIAIKNALKGAWKTRRNFNVESSGRNIFNFKFECQGDRDWVLDNG 68
           D C++GKLL+ R  +  A+KN L   W+  +   V   G N+F F F    D+  VL +G
Sbjct: 37  DMCLVGKLLTRRPFNVEAMKNTLLSVWQPTKGMQVRVIGDNLFVFVFGHVVDKRRVLSDG 96

Query: 69  PWTFDKYLIVLELPTANQRAMEMEFKKADFWIRLINLPTGYRNRKVVRKIGNSIGEFLEV 128
           PWTFDK+L++L     N +  +++  +  FW+ + NLP    N+KV   +GN++G+F+++
Sbjct: 97  PWTFDKHLLMLGEMDPNVQPSDIQLTRVQFWVHVCNLPLVLMNKKVGEIVGNAVGQFIDM 156

Query: 129 GDGNEEISWGNSIPIRVRLDITLPLLRGFMLKAPRVQGNCWVTIHYERLPEFCFLCARIG 188
              +  I WG ++ IRV LD+  PL RG  L     +   WV   YERLP +C+ C R+G
Sbjct: 157 DYEDGGIVWGRTMRIRVALDVRKPLRRGMKLALSSAE-PIWVDFKYERLPIYCYFCGRLG 216

Query: 189 HIAKECE 196
           H  +EC+
Sbjct: 217 HSERECD 222

[Close]

BLAST of Lcy09g016700 vs. TAIR 10
Match: AT3G31430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18636.1); Has 295 Blast hits to 291 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-11
Identity = 42/146 (28.77%), Postives = 67/146 (45.89%), Query Frame = 0


Query: 51  FNFKFECQGDRDWVLDNGPWTFDKYLIVLELPTANQRAMEMEFKKADFWIRLINLPTGYR 110
           F+F F  +   + VL  GPW F+ ++I+L+            F    FW+++  +P  + 
Sbjct: 173 FHFIFTLEESLETVLRRGPWAFNDWMILLQ----RWEPQIPLFPFIPFWVQIRGIPFQFL 232

Query: 111 NRKVVRKIGNSIGEFLEVGDGNEEISWGNSIPIRVRLDITLPL--LRGFMLKAPRVQGNC 170
           NR VV  IG ++G+ L+     E ++  +   + +  DIT PL   R F   A     N 
Sbjct: 233 NRGVVEHIGRALGQVLDTDFNVEVVARMDFARVLLHWDITHPLRFQRHFQFTA---GVNT 292

Query: 171 WVTIHYERLPEFCFLCARIGHIAKEC 195
            +   YERL  FC +C  + H    C
Sbjct: 293 LLRFRYERLRGFCEVCGMLTHDFGAC 311

[Close]

BLAST of Lcy09g016700 vs. TAIR 10
Match: AT3G42140.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 61.6 bits (148), Expect = 8.4e-10
Identity = 38/160 (23.75%), Postives = 67/160 (41.88%), Query Frame = 0


Query: 39  RNFNVESSGRNI----FNFKFECQGDRDWVLDNGPWTFDKYLIVLELPTANQRAMEMEFK 98
           +N + E  GR +      F F+ +     +L  GPW+F+ ++ V++  T  +   + EFK
Sbjct: 46  KNVDEEVVGRILEIHKIEFLFQSEESMFSILRRGPWSFNDWMCVIQRWT--KLHSDAEFK 105

Query: 99  KADFWIRLINLPTGYRNRKVVRKIGNSIGEFLEVGDGNEEISWGNSIPIRVRLDITLPLL 158
           +  FWI++  +P  +   +++  IG  +G FLE   G                D+++   
Sbjct: 106 RIPFWIQIRGIPLRFLTARIITSIGERMGLFLETNLGR---------------DVSV--- 165

Query: 159 RGFMLKAPRVQGNCWVTIHYERLPEFCFLCARIGHIAKEC 195
                          +   YE+L  FC  C  + H A EC
Sbjct: 166 ---------------LKFQYEKLKNFCTTCGMLSHDASEC 170

The following BLAST results are available for this feature:

BLAST of Lcy09g016700 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g016700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU55	1.4e-41	42.55	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1BSZ1	4.0e-36	39.36	uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A5C7IJL3	6.5e-34	36.90	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00419...	[more]
A0A314YVX1	8.4e-34	40.00	CCHC-type domain-containing protein OS=Prunus yedoensis var. nudiflora OX=209455...	[more]
A0A5E4G034	3.2e-33	38.97	PREDICTED: DUF4283 domain-containing OS=Prunus dulcis OX=3755 GN=ALMOND_2B021569...	[more]

BLAST of Lcy09g016700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156185.1	3.0e-41	42.55	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
XP_022132681.1	8.4e-36	39.36	uncharacterized protein LOC111005481 [Momordica charantia]	[more]
TXG69259.1	1.3e-33	36.90	hypothetical protein EZV62_004194 [Acer yangbiense]	[more]
PQQ10307.1	1.7e-33	40.00	uncharacterized protein Pyn_17609 [Prunus yedoensis var. nudiflora]	[more]
XP_028122006.1	2.3e-33	37.43	uncharacterized protein LOC114319195 [Camellia sinensis]	[more]

BLAST of Lcy09g016700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G31430.1	1.2e-11	28.77	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G42140.1	8.4e-10	23.75	zinc ion binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 3..145 e-value: 5.6E-28 score: 97.3
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 147..195 e-value: 2.2E-11 score: 43.3
IPR040256	Uncharacterized protein At4g02000-like	PANTHER	PTHR31286	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE	coord: 4..197
None	No IPR available	PANTHER	PTHR31286:SF84	SUBFAMILY NOT NAMED	coord: 4..197
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 181..194 score: 9.059338

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g016700.1	Lcy09g016700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding