Lcy09g016310 (gene) Sponge gourd (P93075) v1

Overview
NameLcy09g016310
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description40S ribosomal protein S13
LocationChr09: 27672715 .. 27681558 (-)
RNA-Seq ExpressionLcy09g016310
SyntenyLcy09g016310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTGCTATGTAAAGGTAACAACAATGTCTTTTGTCTCATCTGATATGGAAAAGAAAATATGATGGAATAAGGATACTTTTTCAAATGGCATAATTGTCCAACTTATTCTCAATTTTCAAAGAAGATTAATTATCTTACCTCCCCTTCTTTAGGATGGATCATATCATGTACTCGACTATTGTTAGGTTTAAAATTTTAAAAAGTTATCAGTACCTGTTACAGTAATCATAAGGTATTGACTTAATAGTTGTAACATAACTTATAAATGTTGATTCCTTGTAAATTTATCATTGTGTGTTTTTTTCTTCTCGCTGAAAAAGAATTGATAGCGAGCAGAAATGTCGCTATTTTAGTCCCAATTTATCAGGCTTTTCTGTGCTTTAATCGTGTTTTTAATGAAAATATTTAATGAATTCCGTTATTTGGTCCTTAGGAGCAAAGTTGGTGATTTTGGGAGAAAAAGTGCAAAAAAATGAAGCAAATGAAGCCCAAATCCAAGCTTGATCAAATGGGGGCCCAAAAAAGACACTCATGAAAAAATGCCCAAAATAAATGAAGAAGAAGGCCCAAAAATCAGCCCAAAAAGAAGCTGAAAAATCTGGAATTTTAGGGCAGCGTCGAGACGCTATGTAAGCAGCGTCGCGACGCTACCCTTTTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAATGTAGCGTCGCGACGCTACCCCCAATCCGGGCCTATAAAAAGGCACCCTTGGGTGCCTCATTTACCATCAATCAATTCCTTCAATCCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTAGCCTTTTTGAGAGAATTCTTTAGTGGGAAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTTGGTGGAGCTCTGAGAGCCAAGCGAAGGGGTTTTTCGACGGTCAATTCCTTTCCTTTTATGCTCTTAAATTATGCTTTCTATTGTAAATGTTGTGGATATTTTAGCTATGTATAGCTAAACCCCAATTTGGGGTCTTGAAATGAAATTATAGTTGAAATGTTGTTATAATTACCTGTCTCTTGCCCTTTTTCCTAATTATTTGTATGGATGTGCTTAATGCTTTATTCAATCTGGCCAATTGTGTAATGATTCGATTCTTAATGGAGACTCGACGGAGAGAAGTTAGGATAGATCATAATCCATGCAACTAGTTTAATTGCCCGTCGTGACACCGGGATTAGTTGATTAAACTGAGATTCCTAAAATGAATCAGAGCGTAATAATTAATGATTTTTAATGGCGCTAAGGACACTTAGGTTGTTAAAATGAATTAATTACAATTAGGGGAAACCGACAGGAGAACCTATGTGATTAACGGAGATTCTAGGAGTATAATTAGTTGGGCAATGAGATAGGATAATTATAACAATTGATTAGCTCATAATTGATTTTCAAGACCCCTCTTCCCATTAAAAGAAATCTCTTTCTCCATATTTTTTTATTTGATTGATCAAATTATTTTCCTGCTTTGAATTTTAAATTTCTCTTATTTGCATGGGTTGTTCCCTAAATATTATTTTGCCTAAGTACTTTTAGTGCTCAAGAGATTTTTTGCTTAATTTTCGCTTCGCTTCCCTGTGGATTCGATACTCGGTATTACTACCGTTTTATATTACTTGCGGCCCGTGCACTTTGCGGTCATCAAGTTTTTGGCGCCGTTGCCGGGGAAGCTTGATTTTTAAGCAAATTAATTTTTCTTGACATCGAAAAGAAAGGGATAAATAGTAATTTAGGTGTAAATATTTTTCTTTTATTATTTTGTGAATATCATTTGTTTTTGTTTTATTTTGTTTGGTTCTCTTGATTGATTGGGAGTATTGTATGCGAAGGAACAAGGTGGTTAATTTGTTTCCGTTAGATCTTGAAATTGACAGGACTCTTAGATTCATTCGAAGAGAGAAAAGATTAGCAGAAGCAATGGCCCACCAAGAGGAAGCTCCCAAGGCAATTAGAGATTTCTTACAGCCAGTTCTCCCCACCGAGAATTCTGGGATTGTCTACGCCCCAATCCAAGCTACAAATTTTGAGTTAAAGACGGGATTGATTCAGATGGCGCGCGATAACTCGTTTAAGGGACACCCTTCTGAGGACCCACACTCACATCTGCGATCATTCCTGGAAATTTGTGGGACGGTGCAGATGAATGGAGTTCCGGCCGACGCTATCAGATTGAGGTTATTTCCATTCTCTCTACAGGATAAAGCAAAGGATTGGCTCGAATCAGTCGAGACGGGCAGCATAAGTACATGGGATGAGCTTGCCCAGGCTTTTCTGACAAAATTTTTCCCGCCTGCCAAGACTACCAAGCTCCGGACTGAAATCAGAACATTTAGGCAGCTTGACGAGGAGCAGTTGTACGAGGCGTGGGAAAGATACAAAGAAATGCTTAGGCGGTGCCCCCAACACGGATATCCTGATTGGCTTCAAGTACAGTTATTTTATAATGGATTGAATCCCTCCACGAAGACAGTCCTAGACACATCAGCAGGAGGAAGTTTTCTTTCAAAACAGTGACAGAAGCCAAAGATCTGCTTGAGGAAATGGCGGCAACCAGTTATCAATGGCCAACCGAGAGGGGAGCAATTTCAAAGAAGGCTGGATTATATGAATTGGATGAGTCAAGTTCACTGAAGGCACAGCTGGCATCTCTGACCAATGCGCTGAACAAGTTGACTTCGTCTGAGGTGGTCAAGTCCATTTCCACCTTAGCTGAAGGTCATTCAAAGAAGGAAGGTCAAGATGTGGAAGAAGTCCAGTACGTAGGAAATAGACCATTTACGCAAGGAATACCGAACTTCTACCACCCCAGTCTACGCAATCATGAGAACTTCTCATACTCAAATACAAAGAATGTCTTGCAGCCACCGCCAGGTTTTGCATCATCTAGTGTGCCTGAAAAGAAGAATAACCTGGAGGAGTTGGTGGCTATGTTTGTAAAGGAACATAAAGTTTTGAACGTCAATCTCCAGACAGCAGTCAATAACCACGACACAGCTCTGAAAAACATGGAAGTTCAAATAGGACAGATCGCTTCAGCAGTGAATGCACTTCAAAAGGGAAAATTTCCAAGCGACACTGAGCCTAACCCAAGAGAGCAGTGCAAGATGGTGACACTGAGAAGTGGTAGACAGCTGGAGAACAGTTCAGAAAAGAAGAAGGAAGAAGAAAAGAGAAGGGATGAAGATGAAAGGGCTGAGGCACAAAAAGCCTCCTCTGAAAGGTCCCAACATCCTCCTGACTCTATTGACTTAAATTGTGATTTTTCTAACAATTTTGCAGGTAGAAAAGAAGATAAAAAGCAGGATGGCAGGCACAACAAGAAACTGTACGAGGAAGAAGTGGTCCCATGCAACCACCATGACAAAGGCTCGCACATCAGCCCGCCCAGGCGAAGGGGCGAATGTCCAACCTTTGACTACAGGGAGTTACCTTTTCCTCAGCGCTTTAAGAATGTTAAATTAGATGAGCAGTTTCAAAAATTTCTAGAAATGTTTAAGAAATTGTCTGTGAATATTCCCTTAGTAGATGCCTTGTATAACATGCCTAATTATGGGAAATTCATGAAAGAAATGCTTTCTAGAAAGAAAAGTCTGAAAAAAGAAATTTTTAAATTGTCTGAGAGTAGCAGTACCATAGTATCTGGGAAGATGCCTTCTAAACAAAAAGATCCAGGGAGTTTTACTGTTCCCTGCACCATAGGAGAAGCATCTTTCTATAGGGCCTTATGTGATTTAGGAGCAAGTATAAACTTGATGCCCTATTCTGTTTACAGGAGGATTGGTTTAACAGGTATGAAGGACACCGACGTCACTCTCCAGCTTGCTGACAGATCAATTACCCAACCAATGGGTGTTGTGGAGGACGTATTGGTGAAGGTCAACAAGTTTATCTTCCCCGTAGATTTTGTGGTACTAGACATGAAGGAGGACAAGGAGGTGCCCATTATTCTAGGCAGACCTTTCCTAGCTACAGGTAAAGCTGAGATCAGTGTCCACACAGGTAAGCTTACCTTGAACATTGATGATGAAAAAGTTGTGTTTAGTATTTTTGGACAAGATGAGTCTGTATGTAGTTTGCATACATGTTTTTCTATTGGTCCTGAATACTTGACTGACGATGATGAGGAGGTAGAGTTTAATCTTGGCTTAGGCTTAGGAGAAGTGCCTATGGATGATGAGGATTTTGATCACAATGCATATTTGAATAATCCTCTGTTTGAGAATGATTTAGAACTGCCTGACTTTGAAAATGAATTAGACTTGCCTGCTTGTGACAATGAAAGATCTGCAGTTGATGATTTACCTTCCTTTGAGAATGAATTAGATTTGCCTGAAATGGATAATTTTGATGATGATATAGAGTTGCCTGACATTGAGGATGAGCATGAAATGCATAAAAAAGATTACTTGGTAGATAATTTTGAGTCTGATCGTGATTATACTGAATCTATTGAGTCTGATCTTGACATTCCTGAATGCATGAACCCTAATAATGTTAACACCTTTGATTCGTGTCCTGATGATGTATATAGCATAGAAACTGACCCAGAGGAACTCGAATCTGTGCATAGTATAGAATCTGACCCTGAAGAGCTTGAATTCTTTAATTCTGATAGTGAGTCATGTGATAGCCTAGTCGAATCATTTTTTAATACTGAGTCTGAGGAATCTGAGGAGCATGTAAATGTTTTTTCTGATGAATGGTCTGGCATGATTGATAGGCCATCTTTAGATCCTAGACCGGTAGATATTATAACGCTTGATGACTCTGTTAACAATTGCTTTGTGAATAGAGACTTAGAAAAGAGATTTGATGCTGTTACATATTTTCTGCAATGTTATTATGATAATCTCTTTAGTGATGATGGGCCAGGGGAAAGTTTTTTTTCTCCCCTGTTTGCGGTATGCAACTCGGTGCGTGATTTTTTACAAGGCCCAGAGGATGATGAAAATTTTTATTTCGAGCCTCCGTAAGCGTGCCGAGCCTCGTCTAGCTAAAGACGTTAAAGAAAGCGCTGCTTGGGAGGCAACCCAAGGATTAAAGTTTAGATAGTTGTTTTTGCGGTAAATAATTTTCTTTGCTTCGTGATCCAATTTTGTTTTGCAGGATCACCTTAAGCAATCCCAAAATTCCAAGAATCCCATTTTTCTGGATCGAAAGGAAGAGGATAAAGCGCTCCTAGCTCAGGGAAGTCTCAGTATCCCTCTATTTGCTTTACTGTTTTAAAAACATTGGGGACAATGTTTAATTTAAGTTTGGGGGGGAGGCTTCCGCTGTGTTGAGCATATTTGAATTCTTTCGGATGCATGAATAGATAGCCATGATAGCCAGGGATGTGATTTTAGAAATTTTGGGAGAAGATAGTTTATATGTTGTGGAATCTGGGAGCACGGCAGAAATTGTGAAATTTTAAAATTTTTTGATACTTAGTTTTGATGTCTAAAGCATGCAATAGCCTTATCTAATGACGTCTTTGAAAATCTAGATTCTTATTATGATTTTTAAAGTTTGTTGTCACCCCGATAGGCTTAGTTTCTAATATTAGGAAGTTCATGCTTGATTGTTCTAAAGAGCTAGGTAGGAAAAAAAAAAAAATGTTATGCCTGCTGAGAGAAAAGCAAAAGCAACAAAAGAAAATGAGAGAAAAGAAAAATCTGTTGAAAAAGAAAATTTTTTGCTTGCACAAAAGAAAAAGCCTAGGGGTAAAAAGAGCTACCTGCGGTGTGATCAGTTAGGCCAACCAGAGAATAAAATTCGGGTTAAGGGTCCCTGCACCGTAGTGTGAAAGCTAGTACCATTAGATATCAAAATGCAAGTTTGGGGGAGTAGCAAAAGAAAAAGCAAAAGAAAGAGAAAAATCAATTGTGAGTTTTGCTCCCCCATGAAAAAGAAAATATCAGGCACCCTAGTTTCTTTTTTTTTTTGCATGATAGAAGGACTCCGACCTATTAGGGGCTCTTAGCCAGTGTAGGGGGAAAACAAATGGAGAAAGCCATAAGACTAATCTAGGTTAGTAAAAGAATCAATAGATAAGTCTTGAGCATGCTATTCATTAATCTTAAGTTCAATCTAGTTTAAGATTTCTTCAAGAGTATGCGGTGCTTGCTTATTCCACTTGCATGTTTTCCATTCTATCTTAAGAATTCCAAAATCATTGAGGCTTGAGCGATTCTATTTCATGCATCTTTAGAATTTATTTTGCTCGGGACTAGCAAAAGCTTAAGTTTGGGGGTGTGATAGCGAGCAGAAATGTCGCTATTTTAGTCCCAATTTATCAGGCTTTTCTGTGCTTTAATCGTGTTTTTAATGAAAATATTTAATGAATTCCGTTATTTGGTCCTTAGGAGCAAAGTTGGTGATTTTGGGAGAAAAAGTGCAAAAAAATGAAGCAAATGAAGCCCAAATCCAAGCTTGATCAAATGGGGGCCCAAAAAAGACACTCATGAAAAAATGCCCAAAAGAAATGAAGAAGAAGGCCCAAAAATCAGCCCAAAAAGAAGCTGAAAAATCTGGAATTTTAGGGCAGCGTCGAGACGCTATGTAAGCAGCGTCGCGACGCTACCCTTTTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAATGTAGCGTCGCGACGCTACCCCCAATCCGGGCCTATAAAAAGGCACCCTTGGGTGCCTCATTTACCATCAATCAATTCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTAGCCTTTTTGAGAGAATTCTTTAGTGGGAAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTCGGCGGAGCTCTGAGCGCCAAGCGAAGGGGTTTTTCGACGGTCAATTCCTTTCCTTTTATGCTCTTAAATTATGCTTTCTATTGTAAATGTTGTGGATATTTTAGCTATGTATAGCTAAACCCCAATTTGGGGTCTTGAAATGAAATTATAGTTGAAATGTTGTTATAATTACCTGTCTCTTGCCGTTTTTCCTAATTATTTGTATGGATGTGCTTAATGCTTTATTCAATCTGGCCAATTGTGTAATGATTCGATTCTTAATGGAGACTCGACGGAGAGAAGTTAGGATAGATCATAATCCATGCAACTAGTTTAATTGCCCGTCGTGACACCGGGATTAGTTGATTAAACTGAGATTCCTAAAATGAATCAGAGCGTAATAATTAATGATTTTTAATGGCGCTAAGGACACTTAGGTTGTTAAAATGAATTAATTACAATTAGGGGAAACCGACAGGAGAACCTATGTGATTAACGGAGATTCTAGGAGTATAATTAGTTGGGCAATGAGATAGGATAATTATAACAATTGATTAGCTCATAATTGATTTTCAAGACCCCTCTTCCCATTAAAAGAAATCTCTTTCTCCATATTTTTTTATTTGATTGATCAAATTATTTTCCTGCTTTGAATTTTAAATTTCTCTTATTTGCATGGGTTGTTCCCTAAATATTATTTTGCCTAAGTACTTTTAGTGCTCAAGAGATTTTTTGCTTAATTTTCGCTTCGCTTCCCTGTGGATTCGATACTCGGTATTACTACCGTTTTATATTACTTGCGGCCCGTGCACTTTGCGGTCATCAAGAATCCCAAATTTTTTCTGGGAGTTAGCATTGTGCCCACCCCCCACACGTCCCCCCATGTGGTAACGATGCAATGTCAATCTTTCAATGATCAAGGCATTACTCTGTTAACTCCAACAACAGTAGATCTATATTTTCATATTCTTTTCAACTTATTGGCGTTATATAGTATCCTGGCCACTTACTAGTTACTCAAATGAACACTCCTTGCAATGAACCTCTTGATTTTATATTTTATACTAACATTCATACACTTTTCTGCAGAGATGCAACCATTATACGAAGAGTTTTAGAAGGATTAATGCAAAACAAACATTGTTGCGCAATGTCAGTGCTTATGCAGAATTCCTCTTTCAGGTTTGCATTAGTTGCTTTGTTAACTTATGCATTGAAATCAGCTTTCAGTATACCTTGCTCATAGCAGATAGGGTCCCATTGAAAATTACCAGGAAGAAAAAGAGGTTCTTGTAAAAGATTGCTCATGTGATTGGCTGGCGATGAAAATTGCAGTCGTTGATTTTAGTGAAGCATGGTGACATGTTTTTGAGTGTCATCTGAGTGTCAATTCTGATGGTTATACTTGTCGAATGTCTAAGAAAACCGCAAGTTCTTTCATTGCTTGTCATTTTAACTGCTTAGAAAGGGAAGTGAATCTCTGTACGATCTATAGAAATTGATGGCTTTCCTTTGACAATTCAGGTTGCTGAGTACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGGTGTTATTCTTCGTGATTCTCACGTGATTGCTCAGGTGAAAAGTGTAACTGAGAGCAAGATCTTGCGTATATTGAAGGCTCATGGTGAGCCCCATCTACCCTTCCTCCATTGTACTTCTATTCTATACATTAGTCAAAATTATTATGTTATTCTTTTTAACATGTTTTCTTTTTTGGCTTAGGGCTAGCTCCTAAAATCTCGGGGGATCTTTACCATCTCATCAAGAAGGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCCAAGTTCAAGTTGATTTTGGTGGAGAGCAGGATCCATCGTCTGGCCCGGTATTACAAGAAGACAGAAGCTTCCCCCTATTTGGAAGTAGTAAGTATTTTAAGGCATAG

mRNA sequence

ATGTATTGCTATGTAAAGAGATGCAACCATTATACGAAGAGTTTTAGAAGGATTAATGCAAAACAAACATTGTTGCGCAATGTCAGTGCTTATGCAGAATTCCTCTTTCAGGTTGCTGAGTACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGGTGTTATTCTTCGTGATTCTCACGTGATTGCTCAGGTGAAAAGTGTAACTGAGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTAAAATCTCGGGGGATCTTTACCATCTCATCAAGAAGGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCCAAGTTCAAGTTGATTTTGGTGGAGAGCAGGATCCATCGTCTGGCCCGGTATTACAAGAAGACAGAAGCTTCCCCCTATTTGGAAGTAGTAAGTATTTTAAGGCATAG

Coding sequence (CDS)

ATGTATTGCTATGTAAAGAGATGCAACCATTATACGAAGAGTTTTAGAAGGATTAATGCAAAACAAACATTGTTGCGCAATGTCAGTGCTTATGCAGAATTCCTCTTTCAGGTTGCTGAGTACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGGTGTTATTCTTCGTGATTCTCACGTGATTGCTCAGGTGAAAAGTGTAACTGAGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTAAAATCTCGGGGGATCTTTACCATCTCATCAAGAAGGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCCAAGTTCAAGTTGATTTTGGTGGAGAGCAGGATCCATCGTCTGGCCCGGTATTACAAGAAGACAGAAGCTTCCCCCTATTTGGAAGTAGTAAGTATTTTAAGGCATAG

Protein sequence

MYCYVKRCNHYTKSFRRINAKQTLLRNVSAYAEFLFQVAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQVDFGGEQDPSSGPVLQEDRSFPLFGSSKYFKA
Homology
[Close]
BLAST of Lcy09g016310 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.1e-30
Identity = 68/83 (81.93%), Postives = 74/83 (89.16%), Query Frame = 0 

Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           V E ICKFAKKGLTPS+IGVILRDSH IAQV SVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK VSIRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Lcy09g016310 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 8.9e-30
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 0 

Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           V E ICKFAKKGLTPS+IGVILRDSH I QVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK V+IRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Lcy09g016310 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 8.9e-30
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 0 

Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           V E ICKFAKKGLTPS+IGVILRDSH I QVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK V+IRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Lcy09g016310 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-29
Identity = 68/83 (81.93%), Postives = 74/83 (89.16%), Query Frame = 0 

Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           V E ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK VSIRKHLER +KDKDS+ ++
Sbjct: 93  KKAVSIRKHLERFRKDKDSKFRL 115

[Close]
BLAST of Lcy09g016310 vs. ExPASy Swiss-Prot
Match: Q56JX8 (40S ribosomal protein S13 OS=Bos taurus OX=9913 GN=RPS13 PE=2 SV=3)

HSP 1 Score: 114.8 bits (286), Expect = 8.7e-25
Identity = 57/83 (68.67%), Postives = 70/83 (84.34%), Query Frame = 0 

Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           V E I K AKKGLTPS+IGVILRDSH +AQV+ VT +KILRILK+ GLAP +  DLYHLI
Sbjct: 33  VKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK V++RKHLERN+KDKD++ ++
Sbjct: 93  KKAVAVRKHLERNRKDKDAKFRL 115

[Close]
BLAST of Lcy09g016310 vs. ExPASy TrEMBL
Match: A0A6A6MFQ6 (Ribosomal_S13_N domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_026488 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.5e-29
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 0 

Query: 36  FQVAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYH 95
           FQV E ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYH
Sbjct: 8   FQVQENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYH 67

Query: 96  LIKKVVSIRKHLERNKKDKDSQVQV 121
           LIKK V+IRKHLERN+KDKDS+ ++
Sbjct: 68  LIKKAVAIRKHLERNRKDKDSKFRL 92

[Close]
BLAST of Lcy09g016310 vs. ExPASy TrEMBL
Match: A0A6J1KV63 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.9e-29
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 0 

Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK VSIRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Lcy09g016310 vs. ExPASy TrEMBL
Match: A0A6J1HJL3 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.9e-29
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 0 

Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK VSIRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Lcy09g016310 vs. ExPASy TrEMBL
Match: A0A6J1CQC4 (40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111013762 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.9e-29
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 0 

Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK VSIRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Lcy09g016310 vs. ExPASy TrEMBL
Match: A0A1S4D890 (30S ribosomal protein S15, chloroplastic OS=Nicotiana tabacum OX=4097 GN=LOC107827027 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.9e-29
Identity = 69/85 (81.18%), Postives = 77/85 (90.59%), Query Frame = 0 

Query: 36  FQVAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYH 95
           FQV + ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYH
Sbjct: 5   FQVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYH 64

Query: 96  LIKKVVSIRKHLERNKKDKDSQVQV 121
           LIKK V+IRKHLERN+KDKDS+ ++
Sbjct: 65  LIKKAVAIRKHLERNRKDKDSKFRL 89

[Close]
BLAST of Lcy09g016310 vs. NCBI nr
Match: KAF2311747.1 (hypothetical protein GH714_026488 [Hevea brasiliensis])

HSP 1 Score: 137.9 bits (346), Expect = 7.3e-29
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 0 

Query: 36  FQVAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYH 95
           FQV E ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYH
Sbjct: 8   FQVQENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYH 67

Query: 96  LIKKVVSIRKHLERNKKDKDSQVQV 121
           LIKK V+IRKHLERN+KDKDS+ ++
Sbjct: 68  LIKKAVAIRKHLERNRKDKDSKFRL 92

[Close]
BLAST of Lcy09g016310 vs. NCBI nr
Match: XP_009596116.1 (40S ribosomal protein S13-like [Nicotiana tomentosiformis])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-28
Identity = 69/86 (80.23%), Postives = 78/86 (90.70%), Query Frame = 0 

Query: 35  LFQVAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLY 94
           +FQV + ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLY
Sbjct: 5   VFQVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLY 64

Query: 95  HLIKKVVSIRKHLERNKKDKDSQVQV 121
           HLIKK V+IRKHLERN+KDKDS+ ++
Sbjct: 65  HLIKKAVAIRKHLERNRKDKDSKFRL 90

[Close]
BLAST of Lcy09g016310 vs. NCBI nr
Match: XP_016509568.1 (PREDICTED: 40S ribosomal protein S13-like, partial [Nicotiana tabacum])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-28
Identity = 69/85 (81.18%), Postives = 77/85 (90.59%), Query Frame = 0 

Query: 36  FQVAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYH 95
           FQV + ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYH
Sbjct: 5   FQVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYH 64

Query: 96  LIKKVVSIRKHLERNKKDKDSQVQV 121
           LIKK V+IRKHLERN+KDKDS+ ++
Sbjct: 65  LIKKAVAIRKHLERNRKDKDSKFRL 89

[Close]
BLAST of Lcy09g016310 vs. NCBI nr
Match: XP_022143980.1 (40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022964010.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_023000449.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023006177.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023514341.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >XP_023547500.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6574796.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013377.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6593712.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026051.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-28
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 0 

Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK VSIRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Lcy09g016310 vs. NCBI nr
Match: XP_038906798.1 (40S ribosomal protein S13 [Benincasa hispida])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-28
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 0 

Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK VSIRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Lcy09g016310 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 131.3 bits (329), Expect = 6.4e-31
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 0 

Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           V E ICKFAKKGLTPS+IGVILRDSH I QVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK V+IRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Lcy09g016310 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 131.3 bits (329), Expect = 6.4e-31
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 0 

Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           V E ICKFAKKGLTPS+IGVILRDSH I QVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK V+IRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRL 115

The following BLAST results are available for this feature:
BLAST of Lcy09g016310 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P623023.1e-3081.9340S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1[more]
P592238.9e-3080.7240S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1[more]
P592248.9e-3080.7240S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1[more]
P462981.2e-2981.9340S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1[more]
Q56JX88.7e-2568.6740S ribosomal protein S13 OS=Bos taurus OX=9913 GN=RPS13 PE=2 SV=3[more]
BLAST of Lcy09g016310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A6MFQ63.5e-2982.35Ribosomal_S13_N domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714... [more]
A0A6J1KV637.9e-2984.3440S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 ... [more]
A0A6J1HJL37.9e-2984.3440S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=... [more]
A0A6J1CQC47.9e-2984.3440S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111013762 PE... [more]
A0A1S4D8907.9e-2981.1830S ribosomal protein S15, chloroplastic OS=Nicotiana tabacum OX=4097 GN=LOC1078... [more]
BLAST of Lcy09g016310 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF2311747.17.3e-2982.35hypothetical protein GH714_026488 [Hevea brasiliensis][more]
XP_009596116.11.2e-2880.2340S ribosomal protein S13-like [Nicotiana tomentosiformis][more]
XP_016509568.11.6e-2881.18PREDICTED: 40S ribosomal protein S13-like, partial [Nicotiana tabacum][more]
XP_022143980.11.6e-2884.3440S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosom... [more]
XP_038906798.11.6e-2884.3440S ribosomal protein S13 [Benincasa hispida][more]
BLAST of Lcy09g016310 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G60770.16.4e-3180.72Ribosomal protein S13/S15 [more]
AT4G00100.16.4e-3180.72ribosomal protein S13A [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 7..65
e-value: 0.0067
score: 11.9
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 37..65
e-value: 1.5E-9
score: 37.8
NoneNo IPR availableGENE3D1.10.287.10coord: 88..122
e-value: 6.3E-12
score: 47.6
NoneNo IPR availableGENE3D4.10.860.130coord: 40..87
e-value: 2.0E-25
score: 90.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..138
NoneNo IPR availablePANTHERPTHR11885:SF2540S RIBOSOMAL PROTEIN S13-1-RELATEDcoord: 37..120
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 37..120
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 71..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy09g016310.1Lcy09g016310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome