Lcy09g016310 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g016310
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	40S ribosomal protein S13
Location	Chr09: 27672715 .. 27681558 (-)
RNA-Seq Expression	Lcy09g016310
Synteny	Lcy09g016310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTGCTATGTAAAGGTAACAACAATGTCTTTTGTCTCATCTGATATGGAAAAGAAAATATGATGGAATAAGGATACTTTTTCAAATGGCATAATTGTCCAACTTATTCTCAATTTTCAAAGAAGATTAATTATCTTACCTCCCCTTCTTTAGGATGGATCATATCATGTACTCGACTATTGTTAGGTTTAAAATTTTAAAAAGTTATCAGTACCTGTTACAGTAATCATAAGGTATTGACTTAATAGTTGTAACATAACTTATAAATGTTGATTCCTTGTAAATTTATCATTGTGTGTTTTTTTCTTCTCGCTGAAAAAGAATTGATAGCGAGCAGAAATGTCGCTATTTTAGTCCCAATTTATCAGGCTTTTCTGTGCTTTAATCGTGTTTTTAATGAAAATATTTAATGAATTCCGTTATTTGGTCCTTAGGAGCAAAGTTGGTGATTTTGGGAGAAAAAGTGCAAAAAAATGAAGCAAATGAAGCCCAAATCCAAGCTTGATCAAATGGGGGCCCAAAAAAGACACTCATGAAAAAATGCCCAAAATAAATGAAGAAGAAGGCCCAAAAATCAGCCCAAAAAGAAGCTGAAAAATCTGGAATTTTAGGGCAGCGTCGAGACGCTATGTAAGCAGCGTCGCGACGCTACCCTTTTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAATGTAGCGTCGCGACGCTACCCCCAATCCGGGCCTATAAAAAGGCACCCTTGGGTGCCTCATTTACCATCAATCAATTCCTTCAATCCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTAGCCTTTTTGAGAGAATTCTTTAGTGGGAAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTTGGTGGAGCTCTGAGAGCCAAGCGAAGGGGTTTTTCGACGGTCAATTCCTTTCCTTTTATGCTCTTAAATTATGCTTTCTATTGTAAATGTTGTGGATATTTTAGCTATGTATAGCTAAACCCCAATTTGGGGTCTTGAAATGAAATTATAGTTGAAATGTTGTTATAATTACCTGTCTCTTGCCCTTTTTCCTAATTATTTGTATGGATGTGCTTAATGCTTTATTCAATCTGGCCAATTGTGTAATGATTCGATTCTTAATGGAGACTCGACGGAGAGAAGTTAGGATAGATCATAATCCATGCAACTAGTTTAATTGCCCGTCGTGACACCGGGATTAGTTGATTAAACTGAGATTCCTAAAATGAATCAGAGCGTAATAATTAATGATTTTTAATGGCGCTAAGGACACTTAGGTTGTTAAAATGAATTAATTACAATTAGGGGAAACCGACAGGAGAACCTATGTGATTAACGGAGATTCTAGGAGTATAATTAGTTGGGCAATGAGATAGGATAATTATAACAATTGATTAGCTCATAATTGATTTTCAAGACCCCTCTTCCCATTAAAAGAAATCTCTTTCTCCATATTTTTTTATTTGATTGATCAAATTATTTTCCTGCTTTGAATTTTAAATTTCTCTTATTTGCATGGGTTGTTCCCTAAATATTATTTTGCCTAAGTACTTTTAGTGCTCAAGAGATTTTTTGCTTAATTTTCGCTTCGCTTCCCTGTGGATTCGATACTCGGTATTACTACCGTTTTATATTACTTGCGGCCCGTGCACTTTGCGGTCATCAAGTTTTTGGCGCCGTTGCCGGGGAAGCTTGATTTTTAAGCAAATTAATTTTTCTTGACATCGAAAAGAAAGGGATAAATAGTAATTTAGGTGTAAATATTTTTCTTTTATTATTTTGTGAATATCATTTGTTTTTGTTTTATTTTGTTTGGTTCTCTTGATTGATTGGGAGTATTGTATGCGAAGGAACAAGGTGGTTAATTTGTTTCCGTTAGATCTTGAAATTGACAGGACTCTTAGATTCATTCGAAGAGAGAAAAGATTAGCAGAAGCAATGGCCCACCAAGAGGAAGCTCCCAAGGCAATTAGAGATTTCTTACAGCCAGTTCTCCCCACCGAGAATTCTGGGATTGTCTACGCCCCAATCCAAGCTACAAATTTTGAGTTAAAGACGGGATTGATTCAGATGGCGCGCGATAACTCGTTTAAGGGACACCCTTCTGAGGACCCACACTCACATCTGCGATCATTCCTGGAAATTTGTGGGACGGTGCAGATGAATGGAGTTCCGGCCGACGCTATCAGATTGAGGTTATTTCCATTCTCTCTACAGGATAAAGCAAAGGATTGGCTCGAATCAGTCGAGACGGGCAGCATAAGTACATGGGATGAGCTTGCCCAGGCTTTTCTGACAAAATTTTTCCCGCCTGCCAAGACTACCAAGCTCCGGACTGAAATCAGAACATTTAGGCAGCTTGACGAGGAGCAGTTGTACGAGGCGTGGGAAAGATACAAAGAAATGCTTAGGCGGTGCCCCCAACACGGATATCCTGATTGGCTTCAAGTACAGTTATTTTATAATGGATTGAATCCCTCCACGAAGACAGTCCTAGACACATCAGCAGGAGGAAGTTTTCTTTCAAAACAGTGACAGAAGCCAAAGATCTGCTTGAGGAAATGGCGGCAACCAGTTATCAATGGCCAACCGAGAGGGGAGCAATTTCAAAGAAGGCTGGATTATATGAATTGGATGAGTCAAGTTCACTGAAGGCACAGCTGGCATCTCTGACCAATGCGCTGAACAAGTTGACTTCGTCTGAGGTGGTCAAGTCCATTTCCACCTTAGCTGAAGGTCATTCAAAGAAGGAAGGTCAAGATGTGGAAGAAGTCCAGTACGTAGGAAATAGACCATTTACGCAAGGAATACCGAACTTCTACCACCCCAGTCTACGCAATCATGAGAACTTCTCATACTCAAATACAAAGAATGTCTTGCAGCCACCGCCAGGTTTTGCATCATCTAGTGTGCCTGAAAAGAAGAATAACCTGGAGGAGTTGGTGGCTATGTTTGTAAAGGAACATAAAGTTTTGAACGTCAATCTCCAGACAGCAGTCAATAACCACGACACAGCTCTGAAAAACATGGAAGTTCAAATAGGACAGATCGCTTCAGCAGTGAATGCACTTCAAAAGGGAAAATTTCCAAGCGACACTGAGCCTAACCCAAGAGAGCAGTGCAAGATGGTGACACTGAGAAGTGGTAGACAGCTGGAGAACAGTTCAGAAAAGAAGAAGGAAGAAGAAAAGAGAAGGGATGAAGATGAAAGGGCTGAGGCACAAAAAGCCTCCTCTGAAAGGTCCCAACATCCTCCTGACTCTATTGACTTAAATTGTGATTTTTCTAACAATTTTGCAGGTAGAAAAGAAGATAAAAAGCAGGATGGCAGGCACAACAAGAAACTGTACGAGGAAGAAGTGGTCCCATGCAACCACCATGACAAAGGCTCGCACATCAGCCCGCCCAGGCGAAGGGGCGAATGTCCAACCTTTGACTACAGGGAGTTACCTTTTCCTCAGCGCTTTAAGAATGTTAAATTAGATGAGCAGTTTCAAAAATTTCTAGAAATGTTTAAGAAATTGTCTGTGAATATTCCCTTAGTAGATGCCTTGTATAACATGCCTAATTATGGGAAATTCATGAAAGAAATGCTTTCTAGAAAGAAAAGTCTGAAAAAAGAAATTTTTAAATTGTCTGAGAGTAGCAGTACCATAGTATCTGGGAAGATGCCTTCTAAACAAAAAGATCCAGGGAGTTTTACTGTTCCCTGCACCATAGGAGAAGCATCTTTCTATAGGGCCTTATGTGATTTAGGAGCAAGTATAAACTTGATGCCCTATTCTGTTTACAGGAGGATTGGTTTAACAGGTATGAAGGACACCGACGTCACTCTCCAGCTTGCTGACAGATCAATTACCCAACCAATGGGTGTTGTGGAGGACGTATTGGTGAAGGTCAACAAGTTTATCTTCCCCGTAGATTTTGTGGTACTAGACATGAAGGAGGACAAGGAGGTGCCCATTATTCTAGGCAGACCTTTCCTAGCTACAGGTAAAGCTGAGATCAGTGTCCACACAGGTAAGCTTACCTTGAACATTGATGATGAAAAAGTTGTGTTTAGTATTTTTGGACAAGATGAGTCTGTATGTAGTTTGCATACATGTTTTTCTATTGGTCCTGAATACTTGACTGACGATGATGAGGAGGTAGAGTTTAATCTTGGCTTAGGCTTAGGAGAAGTGCCTATGGATGATGAGGATTTTGATCACAATGCATATTTGAATAATCCTCTGTTTGAGAATGATTTAGAACTGCCTGACTTTGAAAATGAATTAGACTTGCCTGCTTGTGACAATGAAAGATCTGCAGTTGATGATTTACCTTCCTTTGAGAATGAATTAGATTTGCCTGAAATGGATAATTTTGATGATGATATAGAGTTGCCTGACATTGAGGATGAGCATGAAATGCATAAAAAAGATTACTTGGTAGATAATTTTGAGTCTGATCGTGATTATACTGAATCTATTGAGTCTGATCTTGACATTCCTGAATGCATGAACCCTAATAATGTTAACACCTTTGATTCGTGTCCTGATGATGTATATAGCATAGAAACTGACCCAGAGGAACTCGAATCTGTGCATAGTATAGAATCTGACCCTGAAGAGCTTGAATTCTTTAATTCTGATAGTGAGTCATGTGATAGCCTAGTCGAATCATTTTTTAATACTGAGTCTGAGGAATCTGAGGAGCATGTAAATGTTTTTTCTGATGAATGGTCTGGCATGATTGATAGGCCATCTTTAGATCCTAGACCGGTAGATATTATAACGCTTGATGACTCTGTTAACAATTGCTTTGTGAATAGAGACTTAGAAAAGAGATTTGATGCTGTTACATATTTTCTGCAATGTTATTATGATAATCTCTTTAGTGATGATGGGCCAGGGGAAAGTTTTTTTTCTCCCCTGTTTGCGGTATGCAACTCGGTGCGTGATTTTTTACAAGGCCCAGAGGATGATGAAAATTTTTATTTCGAGCCTCCGTAAGCGTGCCGAGCCTCGTCTAGCTAAAGACGTTAAAGAAAGCGCTGCTTGGGAGGCAACCCAAGGATTAAAGTTTAGATAGTTGTTTTTGCGGTAAATAATTTTCTTTGCTTCGTGATCCAATTTTGTTTTGCAGGATCACCTTAAGCAATCCCAAAATTCCAAGAATCCCATTTTTCTGGATCGAAAGGAAGAGGATAAAGCGCTCCTAGCTCAGGGAAGTCTCAGTATCCCTCTATTTGCTTTACTGTTTTAAAAACATTGGGGACAATGTTTAATTTAAGTTTGGGGGGGAGGCTTCCGCTGTGTTGAGCATATTTGAATTCTTTCGGATGCATGAATAGATAGCCATGATAGCCAGGGATGTGATTTTAGAAATTTTGGGAGAAGATAGTTTATATGTTGTGGAATCTGGGAGCACGGCAGAAATTGTGAAATTTTAAAATTTTTTGATACTTAGTTTTGATGTCTAAAGCATGCAATAGCCTTATCTAATGACGTCTTTGAAAATCTAGATTCTTATTATGATTTTTAAAGTTTGTTGTCACCCCGATAGGCTTAGTTTCTAATATTAGGAAGTTCATGCTTGATTGTTCTAAAGAGCTAGGTAGGAAAAAAAAAAAAATGTTATGCCTGCTGAGAGAAAAGCAAAAGCAACAAAAGAAAATGAGAGAAAAGAAAAATCTGTTGAAAAAGAAAATTTTTTGCTTGCACAAAAGAAAAAGCCTAGGGGTAAAAAGAGCTACCTGCGGTGTGATCAGTTAGGCCAACCAGAGAATAAAATTCGGGTTAAGGGTCCCTGCACCGTAGTGTGAAAGCTAGTACCATTAGATATCAAAATGCAAGTTTGGGGGAGTAGCAAAAGAAAAAGCAAAAGAAAGAGAAAAATCAATTGTGAGTTTTGCTCCCCCATGAAAAAGAAAATATCAGGCACCCTAGTTTCTTTTTTTTTTTGCATGATAGAAGGACTCCGACCTATTAGGGGCTCTTAGCCAGTGTAGGGGGAAAACAAATGGAGAAAGCCATAAGACTAATCTAGGTTAGTAAAAGAATCAATAGATAAGTCTTGAGCATGCTATTCATTAATCTTAAGTTCAATCTAGTTTAAGATTTCTTCAAGAGTATGCGGTGCTTGCTTATTCCACTTGCATGTTTTCCATTCTATCTTAAGAATTCCAAAATCATTGAGGCTTGAGCGATTCTATTTCATGCATCTTTAGAATTTATTTTGCTCGGGACTAGCAAAAGCTTAAGTTTGGGGGTGTGATAGCGAGCAGAAATGTCGCTATTTTAGTCCCAATTTATCAGGCTTTTCTGTGCTTTAATCGTGTTTTTAATGAAAATATTTAATGAATTCCGTTATTTGGTCCTTAGGAGCAAAGTTGGTGATTTTGGGAGAAAAAGTGCAAAAAAATGAAGCAAATGAAGCCCAAATCCAAGCTTGATCAAATGGGGGCCCAAAAAAGACACTCATGAAAAAATGCCCAAAAGAAATGAAGAAGAAGGCCCAAAAATCAGCCCAAAAAGAAGCTGAAAAATCTGGAATTTTAGGGCAGCGTCGAGACGCTATGTAAGCAGCGTCGCGACGCTACCCTTTTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAATGTAGCGTCGCGACGCTACCCCCAATCCGGGCCTATAAAAAGGCACCCTTGGGTGCCTCATTTACCATCAATCAATTCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTAGCCTTTTTGAGAGAATTCTTTAGTGGGAAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTCGGCGGAGCTCTGAGCGCCAAGCGAAGGGGTTTTTCGACGGTCAATTCCTTTCCTTTTATGCTCTTAAATTATGCTTTCTATTGTAAATGTTGTGGATATTTTAGCTATGTATAGCTAAACCCCAATTTGGGGTCTTGAAATGAAATTATAGTTGAAATGTTGTTATAATTACCTGTCTCTTGCCGTTTTTCCTAATTATTTGTATGGATGTGCTTAATGCTTTATTCAATCTGGCCAATTGTGTAATGATTCGATTCTTAATGGAGACTCGACGGAGAGAAGTTAGGATAGATCATAATCCATGCAACTAGTTTAATTGCCCGTCGTGACACCGGGATTAGTTGATTAAACTGAGATTCCTAAAATGAATCAGAGCGTAATAATTAATGATTTTTAATGGCGCTAAGGACACTTAGGTTGTTAAAATGAATTAATTACAATTAGGGGAAACCGACAGGAGAACCTATGTGATTAACGGAGATTCTAGGAGTATAATTAGTTGGGCAATGAGATAGGATAATTATAACAATTGATTAGCTCATAATTGATTTTCAAGACCCCTCTTCCCATTAAAAGAAATCTCTTTCTCCATATTTTTTTATTTGATTGATCAAATTATTTTCCTGCTTTGAATTTTAAATTTCTCTTATTTGCATGGGTTGTTCCCTAAATATTATTTTGCCTAAGTACTTTTAGTGCTCAAGAGATTTTTTGCTTAATTTTCGCTTCGCTTCCCTGTGGATTCGATACTCGGTATTACTACCGTTTTATATTACTTGCGGCCCGTGCACTTTGCGGTCATCAAGAATCCCAAATTTTTTCTGGGAGTTAGCATTGTGCCCACCCCCCACACGTCCCCCCATGTGGTAACGATGCAATGTCAATCTTTCAATGATCAAGGCATTACTCTGTTAACTCCAACAACAGTAGATCTATATTTTCATATTCTTTTCAACTTATTGGCGTTATATAGTATCCTGGCCACTTACTAGTTACTCAAATGAACACTCCTTGCAATGAACCTCTTGATTTTATATTTTATACTAACATTCATACACTTTTCTGCAGAGATGCAACCATTATACGAAGAGTTTTAGAAGGATTAATGCAAAACAAACATTGTTGCGCAATGTCAGTGCTTATGCAGAATTCCTCTTTCAGGTTTGCATTAGTTGCTTTGTTAACTTATGCATTGAAATCAGCTTTCAGTATACCTTGCTCATAGCAGATAGGGTCCCATTGAAAATTACCAGGAAGAAAAAGAGGTTCTTGTAAAAGATTGCTCATGTGATTGGCTGGCGATGAAAATTGCAGTCGTTGATTTTAGTGAAGCATGGTGACATGTTTTTGAGTGTCATCTGAGTGTCAATTCTGATGGTTATACTTGTCGAATGTCTAAGAAAACCGCAAGTTCTTTCATTGCTTGTCATTTTAACTGCTTAGAAAGGGAAGTGAATCTCTGTACGATCTATAGAAATTGATGGCTTTCCTTTGACAATTCAGGTTGCTGAGTACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGGTGTTATTCTTCGTGATTCTCACGTGATTGCTCAGGTGAAAAGTGTAACTGAGAGCAAGATCTTGCGTATATTGAAGGCTCATGGTGAGCCCCATCTACCCTTCCTCCATTGTACTTCTATTCTATACATTAGTCAAAATTATTATGTTATTCTTTTTAACATGTTTTCTTTTTTGGCTTAGGGCTAGCTCCTAAAATCTCGGGGGATCTTTACCATCTCATCAAGAAGGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCCAAGTTCAAGTTGATTTTGGTGGAGAGCAGGATCCATCGTCTGGCCCGGTATTACAAGAAGACAGAAGCTTCCCCCTATTTGGAAGTAGTAAGTATTTTAAGGCATAG

mRNA sequence

ATGTATTGCTATGTAAAGAGATGCAACCATTATACGAAGAGTTTTAGAAGGATTAATGCAAAACAAACATTGTTGCGCAATGTCAGTGCTTATGCAGAATTCCTCTTTCAGGTTGCTGAGTACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGGTGTTATTCTTCGTGATTCTCACGTGATTGCTCAGGTGAAAAGTGTAACTGAGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTAAAATCTCGGGGGATCTTTACCATCTCATCAAGAAGGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCCAAGTTCAAGTTGATTTTGGTGGAGAGCAGGATCCATCGTCTGGCCCGGTATTACAAGAAGACAGAAGCTTCCCCCTATTTGGAAGTAGTAAGTATTTTAAGGCATAG

Coding sequence (CDS)

ATGTATTGCTATGTAAAGAGATGCAACCATTATACGAAGAGTTTTAGAAGGATTAATGCAAAACAAACATTGTTGCGCAATGTCAGTGCTTATGCAGAATTCCTCTTTCAGGTTGCTGAGTACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGGTGTTATTCTTCGTGATTCTCACGTGATTGCTCAGGTGAAAAGTGTAACTGAGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTAAAATCTCGGGGGATCTTTACCATCTCATCAAGAAGGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCCAAGTTCAAGTTGATTTTGGTGGAGAGCAGGATCCATCGTCTGGCCCGGTATTACAAGAAGACAGAAGCTTCCCCCTATTTGGAAGTAGTAAGTATTTTAAGGCATAG

Protein sequence

MYCYVKRCNHYTKSFRRINAKQTLLRNVSAYAEFLFQVAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQVDFGGEQDPSSGPVLQEDRSFPLFGSSKYFKA

Homology

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BLAST of Lcy09g016310 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.1e-30
Identity = 68/83 (81.93%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           V E ICKFAKKGLTPS+IGVILRDSH IAQV SVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK VSIRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRL 115

[Close]

BLAST of Lcy09g016310 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 8.9e-30
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           V E ICKFAKKGLTPS+IGVILRDSH I QVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK V+IRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRL 115

[Close]

BLAST of Lcy09g016310 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 8.9e-30
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           V E ICKFAKKGLTPS+IGVILRDSH I QVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK V+IRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRL 115

[Close]

BLAST of Lcy09g016310 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-29
Identity = 68/83 (81.93%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           V E ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK VSIRKHLER +KDKDS+ ++
Sbjct: 93  KKAVSIRKHLERFRKDKDSKFRL 115

[Close]

BLAST of Lcy09g016310 vs. ExPASy Swiss-Prot
Match: Q56JX8 (40S ribosomal protein S13 OS=Bos taurus OX=9913 GN=RPS13 PE=2 SV=3)

HSP 1 Score: 114.8 bits (286), Expect = 8.7e-25
Identity = 57/83 (68.67%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           V E I K AKKGLTPS+IGVILRDSH +AQV+ VT +KILRILK+ GLAP +  DLYHLI
Sbjct: 33  VKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK V++RKHLERN+KDKD++ ++
Sbjct: 93  KKAVAVRKHLERNRKDKDAKFRL 115

[Close]

BLAST of Lcy09g016310 vs. ExPASy TrEMBL
Match: A0A6A6MFQ6 (Ribosomal_S13_N domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_026488 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.5e-29
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 36  FQVAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYH 95
           FQV E ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYH
Sbjct: 8   FQVQENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYH 67

Query: 96  LIKKVVSIRKHLERNKKDKDSQVQV 121
           LIKK V+IRKHLERN+KDKDS+ ++
Sbjct: 68  LIKKAVAIRKHLERNRKDKDSKFRL 92

[Close]

BLAST of Lcy09g016310 vs. ExPASy TrEMBL
Match: A0A6J1KV63 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.9e-29
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK VSIRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRL 115

[Close]

BLAST of Lcy09g016310 vs. ExPASy TrEMBL
Match: A0A6J1HJL3 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.9e-29
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK VSIRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRL 115

[Close]

BLAST of Lcy09g016310 vs. ExPASy TrEMBL
Match: A0A6J1CQC4 (40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111013762 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.9e-29
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK VSIRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRL 115

[Close]

BLAST of Lcy09g016310 vs. ExPASy TrEMBL
Match: A0A1S4D890 (30S ribosomal protein S15, chloroplastic OS=Nicotiana tabacum OX=4097 GN=LOC107827027 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.9e-29
Identity = 69/85 (81.18%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 36  FQVAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYH 95
           FQV + ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYH
Sbjct: 5   FQVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYH 64

Query: 96  LIKKVVSIRKHLERNKKDKDSQVQV 121
           LIKK V+IRKHLERN+KDKDS+ ++
Sbjct: 65  LIKKAVAIRKHLERNRKDKDSKFRL 89

[Close]

BLAST of Lcy09g016310 vs. NCBI nr
Match: KAF2311747.1 (hypothetical protein GH714_026488 [Hevea brasiliensis])

HSP 1 Score: 137.9 bits (346), Expect = 7.3e-29
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 36  FQVAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYH 95
           FQV E ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYH
Sbjct: 8   FQVQENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYH 67

Query: 96  LIKKVVSIRKHLERNKKDKDSQVQV 121
           LIKK V+IRKHLERN+KDKDS+ ++
Sbjct: 68  LIKKAVAIRKHLERNRKDKDSKFRL 92

[Close]

BLAST of Lcy09g016310 vs. NCBI nr
Match: XP_009596116.1 (40S ribosomal protein S13-like [Nicotiana tomentosiformis])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-28
Identity = 69/86 (80.23%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 35  LFQVAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLY 94
           +FQV + ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLY
Sbjct: 5   VFQVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLY 64

Query: 95  HLIKKVVSIRKHLERNKKDKDSQVQV 121
           HLIKK V+IRKHLERN+KDKDS+ ++
Sbjct: 65  HLIKKAVAIRKHLERNRKDKDSKFRL 90

[Close]

BLAST of Lcy09g016310 vs. NCBI nr
Match: XP_016509568.1 (PREDICTED: 40S ribosomal protein S13-like, partial [Nicotiana tabacum])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-28
Identity = 69/85 (81.18%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 36  FQVAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYH 95
           FQV + ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYH
Sbjct: 5   FQVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYH 64

Query: 96  LIKKVVSIRKHLERNKKDKDSQVQV 121
           LIKK V+IRKHLERN+KDKDS+ ++
Sbjct: 65  LIKKAVAIRKHLERNRKDKDSKFRL 89

[Close]

BLAST of Lcy09g016310 vs. NCBI nr
Match: XP_022143980.1 (40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022964010.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_023000449.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023006177.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023514341.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >XP_023547500.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6574796.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013377.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6593712.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026051.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-28
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK VSIRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRL 115

[Close]

BLAST of Lcy09g016310 vs. NCBI nr
Match: XP_038906798.1 (40S ribosomal protein S13 [Benincasa hispida])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-28
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK VSIRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRL 115

[Close]

BLAST of Lcy09g016310 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 131.3 bits (329), Expect = 6.4e-31
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           V E ICKFAKKGLTPS+IGVILRDSH I QVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK V+IRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRL 115

[Close]

BLAST of Lcy09g016310 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 131.3 bits (329), Expect = 6.4e-31
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 38  VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLI 97
           V E ICKFAKKGLTPS+IGVILRDSH I QVKSVT SKILRILKAHGLAP+I  DLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 98  KKVVSIRKHLERNKKDKDSQVQV 121
           KK V+IRKHLERN+KDKDS+ ++
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRL 115

The following BLAST results are available for this feature:

BLAST of Lcy09g016310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	3.1e-30	81.93	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P59223	8.9e-30	80.72	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
P59224	8.9e-30	80.72	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
P46298	1.2e-29	81.93	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
Q56JX8	8.7e-25	68.67	40S ribosomal protein S13 OS=Bos taurus OX=9913 GN=RPS13 PE=2 SV=3	[more]

BLAST of Lcy09g016310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A6MFQ6	3.5e-29	82.35	Ribosomal_S13_N domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714...	[more]
A0A6J1KV63	7.9e-29	84.34	40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 ...	[more]
A0A6J1HJL3	7.9e-29	84.34	40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=...	[more]
A0A6J1CQC4	7.9e-29	84.34	40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111013762 PE...	[more]
A0A1S4D890	7.9e-29	81.18	30S ribosomal protein S15, chloroplastic OS=Nicotiana tabacum OX=4097 GN=LOC1078...	[more]

BLAST of Lcy09g016310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF2311747.1	7.3e-29	82.35	hypothetical protein GH714_026488 [Hevea brasiliensis]	[more]
XP_009596116.1	1.2e-28	80.23	40S ribosomal protein S13-like [Nicotiana tomentosiformis]	[more]
XP_016509568.1	1.6e-28	81.18	PREDICTED: 40S ribosomal protein S13-like, partial [Nicotiana tabacum]	[more]
XP_022143980.1	1.6e-28	84.34	40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosom...	[more]
XP_038906798.1	1.6e-28	84.34	40S ribosomal protein S13 [Benincasa hispida]	[more]

BLAST of Lcy09g016310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60770.1	6.4e-31	80.72	Ribosomal protein S13/S15	[more]
AT4G00100.1	6.4e-31	80.72	ribosomal protein S13A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012606	Ribosomal protein S13/S15, N-terminal	SMART	SM01386	Ribosomal_S13_N_2	coord: 7..65 e-value: 0.0067 score: 11.9
IPR012606	Ribosomal protein S13/S15, N-terminal	PFAM	PF08069	Ribosomal_S13_N	coord: 37..65 e-value: 1.5E-9 score: 37.8
None	No IPR available	GENE3D	1.10.287.10		coord: 88..122 e-value: 6.3E-12 score: 47.6
None	No IPR available	GENE3D	4.10.860.130		coord: 40..87 e-value: 2.0E-25 score: 90.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..138
None	No IPR available	PANTHER	PTHR11885:SF25	40S RIBOSOMAL PROTEIN S13-1-RELATED	coord: 37..120
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 37..120
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 71..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g016310.1	Lcy09g016310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome