Lcy09g016220 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g016220
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	SWIM-type domain-containing protein
Location	Chr09: 27309181 .. 27309663 (-)
RNA-Seq Expression	Lcy09g016220
Synteny	Lcy09g016220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAAGTCATTCGGATGTTATTGCAAAGGTGGTTTTTTGAACGTAAGAACGATGTTGACTATCAAGCTACCTATCTGACAAAGTCCGCTGAATTAGAATTGCGTGAAATGATCAACAATGGACACTCAATGCAGGTTCACATTTTTTAAATTGATAAACATATCATATAATATTCCATATATATTATATGTTCACGCTCTTTTATATCGTTTTTTTAGGTCAATCTAGTAAACAACCATTTGTACCAAGTAATTGATGGTTCGAATCAACATGATGTGGATCTAATCAATAGAAGATGTTCTTGTTGCAAATGGGACCAACTACAAATCCTTTGTTTTCATGCATTTGTTGTCTTAACTCGTAAGCACTTATCGATAAATGGTTACGTGTCCCCATTTTATTCCAACAGTACTTTGCGTTGCACATACTCTGGGATAGTCCATCCTATTGGAAATGAAGGTAGTTGGGATATACCATAG

mRNA sequence

ATGTTGGAAGTCATTCGGATGTTATTGCAAAGGTGGTTTTTTGAACGTAAGAACGATGTTGACTATCAAGCTACCTATCTGACAAAGTCCGCTGAATTAGAATTGCGTGAAATGATCAACAATGGACACTCAATGCAGGTCAATCTAGTAAACAACCATTTGTACCAAGTAATTGATGGTTCGAATCAACATGATGTGGATCTAATCAATAGAAGATGTTCTTGTTGCAAATGGGACCAACTACAAATCCTTTGTTTTCATGCATTTGTTGTCTTAACTCGTAAGCACTTATCGATAAATGGTTACGTGTCCCCATTTTATTCCAACAGTACTTTGCGTTGCACATACTCTGGGATAGTCCATCCTATTGGAAATGAAGGTAGTTGGGATATACCATAG

Coding sequence (CDS)

ATGTTGGAAGTCATTCGGATGTTATTGCAAAGGTGGTTTTTTGAACGTAAGAACGATGTTGACTATCAAGCTACCTATCTGACAAAGTCCGCTGAATTAGAATTGCGTGAAATGATCAACAATGGACACTCAATGCAGGTCAATCTAGTAAACAACCATTTGTACCAAGTAATTGATGGTTCGAATCAACATGATGTGGATCTAATCAATAGAAGATGTTCTTGTTGCAAATGGGACCAACTACAAATCCTTTGTTTTCATGCATTTGTTGTCTTAACTCGTAAGCACTTATCGATAAATGGTTACGTGTCCCCATTTTATTCCAACAGTACTTTGCGTTGCACATACTCTGGGATAGTCCATCCTATTGGAAATGAAGGTAGTTGGGATATACCATAG

Protein sequence

MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDGSNQHDVDLINRRCSCCKWDQLQILCFHAFVVLTRKHLSINGYVSPFYSNSTLRCTYSGIVHPIGNEGSWDIP

Homology

[Close]

BLAST of Lcy09g016220 vs. ExPASy TrEMBL
Match: A0A6J1C328 (uncharacterized protein LOC111006994 OS=Momordica charantia OX=3673 GN=LOC111006994 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.5e-23
Identity = 61/132 (46.21%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           MLEV+RM+LQRWF+ERKN  D+Q T  TKS E +LRE I++G +M V  VNN +YQVID 
Sbjct: 491 MLEVVRMMLQRWFYERKNHADFQITEFTKSVEKKLREQISDGRTMHVYAVNNDIYQVIDN 550

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFVVLTRKHLSINGYVSPFYSNSTLRCTYSGIV 120
             Q                               KHL   GYVS +YSN+ LR TYSG +
Sbjct: 551 HRQ-----------------------------VEKHLPTKGYVSLYYSNNYLRSTYSGSI 593

Query: 121 HPIGNEGSWDIP 133
           HP+G++ SW+IP
Sbjct: 611 HPLGHQSSWNIP 593

[Close]

BLAST of Lcy09g016220 vs. ExPASy TrEMBL
Match: A0A6J1DNQ8 (uncharacterized protein LOC111022347 OS=Momordica charantia OX=3673 GN=LOC111022347 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.4e-18
Identity = 55/132 (41.67%), Postives = 73/132 (55.30%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           MLEV+RM+LQRWF++R+NDVD+Q T  TKSAE +L E I+   +M+V  VNN +YQ    
Sbjct: 427 MLEVVRMMLQRWFYKRQNDVDFQITKFTKSAESKLSEQISACRTMKVYAVNNDIYQ---- 486

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFVVLTRKHLSINGYVSPFYSNSTLRCTYSGIV 120
                                             KHL   GYVS +YSN+ L  TYSG +
Sbjct: 487 ----------------------------------KHLPKKGYVSSYYSNNYLSSTYSGSI 520

Query: 121 HPIGNEGSWDIP 133
           HP+G++ SW+IP
Sbjct: 547 HPLGHQSSWNIP 520

[Close]

BLAST of Lcy09g016220 vs. ExPASy TrEMBL
Match: A0A5D3CGP0 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00510 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           MLE +RM+LQRWFFE +ND +YQ T  TK+ E  LR+ I    S++VN VNN  YQVIDG
Sbjct: 59  MLEALRMMLQRWFFEWRNDAEYQVTDFTKTIESILRKQIELSRSVKVNPVNNMKYQVIDG 118

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFVVLTRKH 97
            +Q+ + L  + CSC  WD L+I C H   V T KH
Sbjct: 119 ISQYVIYLPTKVCSCRMWDILEIPCAHVCAVFTMKH 154

[Close]

BLAST of Lcy09g016220 vs. ExPASy TrEMBL
Match: A0A5D3BEQ2 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00400 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 49/131 (37.40%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           +L+ IR  LQRWF+ER+    Y  + L+  AE  +R++++   S  VN V+   +QV+DG
Sbjct: 24  LLKAIREFLQRWFYERRKAASYLKSVLSSWAEGLIRKLVDESRSFIVNPVSEVEFQVVDG 83

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFVVLTRKHLSINGYVSPFYSNSTLRCTYSGIV 120
                V L    CSC  WD  +I C HA +V+   +L+   +VS +Y  + L  TY G+V
Sbjct: 84  GKNFLVKLNCNSCSCLFWDLEEISCAHALIVIRSLNLNPYAFVSQYYYTTVLSATYGGLV 143

Query: 121 HPIGNEGSWDI 132
            PIGN   W +
Sbjct: 144 RPIGNHTDWSV 154

[Close]

BLAST of Lcy09g016220 vs. ExPASy TrEMBL
Match: A0A1S3CNA2 (uncharacterized protein LOC103502841 OS=Cucumis melo OX=3656 GN=LOC103502841 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           MLE +RM+LQRWFFE +ND +YQ T  TK+ E  LR+ I    S++VN VNN  YQVIDG
Sbjct: 59  MLEALRMMLQRWFFEWRNDAEYQVTDFTKTIESILRKQIELSRSVKVNPVNNMKYQVIDG 118

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFVVLTRKH 97
            +Q+ + L  + CSC  WD L+I C H   V T KH
Sbjct: 119 ISQYVIYLPTKVCSCRMWDILEIPCAHVCAVFTMKH 154

[Close]

BLAST of Lcy09g016220 vs. NCBI nr
Match: XP_022134813.1 (uncharacterized protein LOC111006994 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 5.2e-23
Identity = 61/132 (46.21%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           MLEV+RM+LQRWF+ERKN  D+Q T  TKS E +LRE I++G +M V  VNN +YQVID 
Sbjct: 491 MLEVVRMMLQRWFYERKNHADFQITEFTKSVEKKLREQISDGRTMHVYAVNNDIYQVIDN 550

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFVVLTRKHLSINGYVSPFYSNSTLRCTYSGIV 120
             Q                               KHL   GYVS +YSN+ LR TYSG +
Sbjct: 551 HRQ-----------------------------VEKHLPTKGYVSLYYSNNYLRSTYSGSI 593

Query: 121 HPIGNEGSWDIP 133
           HP+G++ SW+IP
Sbjct: 611 HPLGHQSSWNIP 593

[Close]

BLAST of Lcy09g016220 vs. NCBI nr
Match: XP_038907134.1 (uncharacterized protein LOC120092945 [Benincasa hispida])

HSP 1 Score: 114.8 bits (286), Expect = 5.8e-22
Identity = 54/129 (41.86%), Postives = 77/129 (59.69%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           +L+ IR LLQ WF+ER        T LT  AE ELR+  N   + +V+ +NN  Y+V+DG
Sbjct: 522 LLDSIRQLLQDWFYERSKLASSMKTVLTSWAENELRDQHNQSRNFKVDSINNEEYKVVDG 581

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFVVLTRKHLSINGYVSPFYSNSTLRCTYSGIV 120
            N + V++I++ CSCC WD  +I C HA  VL+  +L    +VS +Y ++T   TY   +
Sbjct: 582 DNHYVVNVISKSCSCCFWDLEEIPCAHACAVLSELNLDSYAFVSDYYFSNTFSSTYKRSI 641

Query: 121 HPIGNEGSW 130
           HPIGN   W
Sbjct: 642 HPIGNHSDW 650

[Close]

BLAST of Lcy09g016220 vs. NCBI nr
Match: XP_038880504.1 (uncharacterized protein LOC120072166 [Benincasa hispida])

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-19
Identity = 55/129 (42.64%), Postives = 73/129 (56.59%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           +L+ IR +LQ WF+E+          LT  AE ELRE  N   S +V+ +NN  Y+VIDG
Sbjct: 88  LLDYIREILQNWFYEKGQSTLSMKIVLTSWAEFELREQHNQSRSFKVDPINNEEYKVIDG 147

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFVVLTRKHLSINGYVSPFYSNSTLRCTYSGIV 120
            N   V+L  + CSC  WD ++I C HA  V+   +L I  +V  +Y  STL  TY G V
Sbjct: 148 DNHFLVNLAYKSCSCRVWDLVEIPCAHACAVICGLNLDIYTFVLDYYFCSTLLSTYKGSV 207

Query: 121 HPIGNEGSW 130
           +PIGN   W
Sbjct: 208 YPIGNHSDW 216

[Close]

BLAST of Lcy09g016220 vs. NCBI nr
Match: XP_022155207.1 (uncharacterized protein LOC111022347 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 5.1e-18
Identity = 55/132 (41.67%), Postives = 73/132 (55.30%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           MLEV+RM+LQRWF++R+NDVD+Q T  TKSAE +L E I+   +M+V  VNN +YQ    
Sbjct: 427 MLEVVRMMLQRWFYKRQNDVDFQITKFTKSAESKLSEQISACRTMKVYAVNNDIYQ---- 486

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFVVLTRKHLSINGYVSPFYSNSTLRCTYSGIV 120
                                             KHL   GYVS +YSN+ L  TYSG +
Sbjct: 487 ----------------------------------KHLPKKGYVSSYYSNNYLSSTYSGSI 520

Query: 121 HPIGNEGSWDIP 133
           HP+G++ SW+IP
Sbjct: 547 HPLGHQSSWNIP 520

[Close]

BLAST of Lcy09g016220 vs. NCBI nr
Match: XP_008465177.1 (PREDICTED: uncharacterized protein LOC103502841 [Cucumis melo] >KAA0037688.1 uncharacterized protein E6C27_scaffold1593G00110 [Cucumis melo var. makuwa] >TYK10685.1 uncharacterized protein E5676_scaffold25G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-17
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           MLE +RM+LQRWFFE +ND +YQ T  TK+ E  LR+ I    S++VN VNN  YQVIDG
Sbjct: 59  MLEALRMMLQRWFFEWRNDAEYQVTDFTKTIESILRKQIELSRSVKVNPVNNMKYQVIDG 118

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFVVLTRKH 97
            +Q+ + L  + CSC  WD L+I C H   V T KH
Sbjct: 119 ISQYVIYLPTKVCSCRMWDILEIPCAHVCAVFTMKH 154

The following BLAST results are available for this feature:

BLAST of Lcy09g016220 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g016220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C328	2.5e-23	46.21	uncharacterized protein LOC111006994 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1DNQ8	2.4e-18	41.67	uncharacterized protein LOC111022347 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5D3CGP0	1.2e-17	52.08	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3BEQ2	1.2e-17	37.40	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3CNA2	1.2e-17	52.08	uncharacterized protein LOC103502841 OS=Cucumis melo OX=3656 GN=LOC103502841 PE=...	[more]

BLAST of Lcy09g016220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134813.1	5.2e-23	46.21	uncharacterized protein LOC111006994 [Momordica charantia]	[more]
XP_038907134.1	5.8e-22	41.86	uncharacterized protein LOC120092945 [Benincasa hispida]	[more]
XP_038880504.1	2.1e-19	42.64	uncharacterized protein LOC120072166 [Benincasa hispida]	[more]
XP_022155207.1	5.1e-18	41.67	uncharacterized protein LOC111022347 [Momordica charantia]	[more]
XP_008465177.1	2.5e-17	52.08	PREDICTED: uncharacterized protein LOC103502841 [Cucumis melo] >KAA0037688.1 unc...	[more]

BLAST of Lcy09g016220 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006564	Zinc finger, PMZ-type	SMART	SM00575	26again6	coord: 71..98 e-value: 0.0037 score: 23.1
IPR007527	Zinc finger, SWIM-type	PFAM	PF04434	SWIM	coord: 62..92 e-value: 8.3E-4 score: 19.0
IPR007527	Zinc finger, SWIM-type	PROSITE	PS50966	ZF_SWIM	coord: 55..96 score: 8.951032

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g016220.1	Lcy09g016220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding