Lcy09g016200 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g016200
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	SWIM-type domain-containing protein
Location	Chr09: 27279552 .. 27280034 (-)
RNA-Seq Expression	Lcy09g016200
Synteny	Lcy09g016200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAAGTCATTCGGATGTTATTGCAAAGGTGGTTTTTTGAACGTAAGAACGATGTTGACTATCAAGCTACCTATCTGACAAAGTCCGCTGAATTAGAATTGCGTGAAATGATCAACAATGGACACTCAATGCAGGTTCACATTTTTTAAATTGATAAACATATCATATAATATTCCATATATATTATATGTTCACGCTCTTTTATATCGTTTTTTTAGGTCAATCTAGTAAACAACCATTTGTACCAAGTAATTGATGGTTCGAATCAACATGATGTGGATCTAATCAATAGAAGATGTTCTTGTTGCAAATGGGACCAACTACAAATCCTTTGTTTTCATGCATTTGCTGTCTTAACTCGTAAGCACTTATCGATAAATGGTTACGTGTCCCCATTTTATTCCAACAGTACTTTGCGTTGCACATACTCTGGGATAGTCCATCCTATTGGAAATGAAGGTAGTTGGGATATACCATAG

mRNA sequence

ATGTTGGAAGTCATTCGGATGTTATTGCAAAGGTGGTTTTTTGAACGTAAGAACGATGTTGACTATCAAGCTACCTATCTGACAAAGTCCGCTGAATTAGAATTGCGTGAAATGATCAACAATGGACACTCAATGCAGGTCAATCTAGTAAACAACCATTTGTACCAAGTAATTGATGGTTCGAATCAACATGATGTGGATCTAATCAATAGAAGATGTTCTTGTTGCAAATGGGACCAACTACAAATCCTTTGTTTTCATGCATTTGCTGTCTTAACTCGTAAGCACTTATCGATAAATGGTTACGTGTCCCCATTTTATTCCAACAGTACTTTGCGTTGCACATACTCTGGGATAGTCCATCCTATTGGAAATGAAGGTAGTTGGGATATACCATAG

Coding sequence (CDS)

ATGTTGGAAGTCATTCGGATGTTATTGCAAAGGTGGTTTTTTGAACGTAAGAACGATGTTGACTATCAAGCTACCTATCTGACAAAGTCCGCTGAATTAGAATTGCGTGAAATGATCAACAATGGACACTCAATGCAGGTCAATCTAGTAAACAACCATTTGTACCAAGTAATTGATGGTTCGAATCAACATGATGTGGATCTAATCAATAGAAGATGTTCTTGTTGCAAATGGGACCAACTACAAATCCTTTGTTTTCATGCATTTGCTGTCTTAACTCGTAAGCACTTATCGATAAATGGTTACGTGTCCCCATTTTATTCCAACAGTACTTTGCGTTGCACATACTCTGGGATAGTCCATCCTATTGGAAATGAAGGTAGTTGGGATATACCATAG

Protein sequence

MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDGSNQHDVDLINRRCSCCKWDQLQILCFHAFAVLTRKHLSINGYVSPFYSNSTLRCTYSGIVHPIGNEGSWDIP

Homology

[Close]

BLAST of Lcy09g016200 vs. ExPASy TrEMBL
Match: A0A6J1C328 (uncharacterized protein LOC111006994 OS=Momordica charantia OX=3673 GN=LOC111006994 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.5e-23
Identity = 61/132 (46.21%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           MLEV+RM+LQRWF+ERKN  D+Q T  TKS E +LRE I++G +M V  VNN +YQVID 
Sbjct: 491 MLEVVRMMLQRWFYERKNHADFQITEFTKSVEKKLREQISDGRTMHVYAVNNDIYQVIDN 550

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFAVLTRKHLSINGYVSPFYSNSTLRCTYSGIV 120
             Q                               KHL   GYVS +YSN+ LR TYSG +
Sbjct: 551 HRQ-----------------------------VEKHLPTKGYVSLYYSNNYLRSTYSGSI 593

Query: 121 HPIGNEGSWDIP 133
           HP+G++ SW+IP
Sbjct: 611 HPLGHQSSWNIP 593

[Close]

BLAST of Lcy09g016200 vs. ExPASy TrEMBL
Match: A0A6J1DNQ8 (uncharacterized protein LOC111022347 OS=Momordica charantia OX=3673 GN=LOC111022347 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 3.2e-18
Identity = 55/132 (41.67%), Postives = 73/132 (55.30%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           MLEV+RM+LQRWF++R+NDVD+Q T  TKSAE +L E I+   +M+V  VNN +YQ    
Sbjct: 427 MLEVVRMMLQRWFYKRQNDVDFQITKFTKSAESKLSEQISACRTMKVYAVNNDIYQ---- 486

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFAVLTRKHLSINGYVSPFYSNSTLRCTYSGIV 120
                                             KHL   GYVS +YSN+ L  TYSG +
Sbjct: 487 ----------------------------------KHLPKKGYVSSYYSNNYLSSTYSGSI 520

Query: 121 HPIGNEGSWDIP 133
           HP+G++ SW+IP
Sbjct: 547 HPLGHQSSWNIP 520

[Close]

BLAST of Lcy09g016200 vs. ExPASy TrEMBL
Match: A0A5D3CGP0 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00510 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.2e-18
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           MLE +RM+LQRWFFE +ND +YQ T  TK+ E  LR+ I    S++VN VNN  YQVIDG
Sbjct: 59  MLEALRMMLQRWFFEWRNDAEYQVTDFTKTIESILRKQIELSRSVKVNPVNNMKYQVIDG 118

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFAVLTRKH 97
            +Q+ + L  + CSC  WD L+I C H  AV T KH
Sbjct: 119 ISQYVIYLPTKVCSCRMWDILEIPCAHVCAVFTMKH 154

[Close]

BLAST of Lcy09g016200 vs. ExPASy TrEMBL
Match: A0A1S3CNA2 (uncharacterized protein LOC103502841 OS=Cucumis melo OX=3656 GN=LOC103502841 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.2e-18
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           MLE +RM+LQRWFFE +ND +YQ T  TK+ E  LR+ I    S++VN VNN  YQVIDG
Sbjct: 59  MLEALRMMLQRWFFEWRNDAEYQVTDFTKTIESILRKQIELSRSVKVNPVNNMKYQVIDG 118

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFAVLTRKH 97
            +Q+ + L  + CSC  WD L+I C H  AV T KH
Sbjct: 119 ISQYVIYLPTKVCSCRMWDILEIPCAHVCAVFTMKH 154

[Close]

BLAST of Lcy09g016200 vs. ExPASy TrEMBL
Match: A0A5D3DJR8 (MuDR family transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold162G00300 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.7e-17
Identity = 52/128 (40.62%), Postives = 75/128 (58.59%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           +L+ IR +LQ WF++R+       T LT  AE ELR    N  S  VN +N+  +QVIDG
Sbjct: 528 LLDSIRQILQNWFYDRRKVACCMRTVLTSWAEGELRIQHQNSRSFTVNAINDVEFQVIDG 587

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFAVLTRKHLSINGYVSPFYSNSTLRCTYSGIV 120
             Q  V L  + C+C  WD  +I C HA AVL  ++++   +VS ++ +STL  TY+G V
Sbjct: 588 RKQFIVRLDCKSCTCRVWDLDEIPCAHALAVLRGRNMNTYSFVSKYFLSSTLISTYTGSV 647

Query: 121 HPIGNEGS 129
            P+GN  +
Sbjct: 648 RPVGNHAN 655

[Close]

BLAST of Lcy09g016200 vs. NCBI nr
Match: XP_022134813.1 (uncharacterized protein LOC111006994 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 5.2e-23
Identity = 61/132 (46.21%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           MLEV+RM+LQRWF+ERKN  D+Q T  TKS E +LRE I++G +M V  VNN +YQVID 
Sbjct: 491 MLEVVRMMLQRWFYERKNHADFQITEFTKSVEKKLREQISDGRTMHVYAVNNDIYQVIDN 550

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFAVLTRKHLSINGYVSPFYSNSTLRCTYSGIV 120
             Q                               KHL   GYVS +YSN+ LR TYSG +
Sbjct: 551 HRQ-----------------------------VEKHLPTKGYVSLYYSNNYLRSTYSGSI 593

Query: 121 HPIGNEGSWDIP 133
           HP+G++ SW+IP
Sbjct: 611 HPLGHQSSWNIP 593

[Close]

BLAST of Lcy09g016200 vs. NCBI nr
Match: XP_038907134.1 (uncharacterized protein LOC120092945 [Benincasa hispida])

HSP 1 Score: 115.9 bits (289), Expect = 2.6e-22
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           +L+ IR LLQ WF+ER        T LT  AE ELR+  N   + +V+ +NN  Y+V+DG
Sbjct: 522 LLDSIRQLLQDWFYERSKLASSMKTVLTSWAENELRDQHNQSRNFKVDSINNEEYKVVDG 581

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFAVLTRKHLSINGYVSPFYSNSTLRCTYSGIV 120
            N + V++I++ CSCC WD  +I C HA AVL+  +L    +VS +Y ++T   TY   +
Sbjct: 582 DNHYVVNVISKSCSCCFWDLEEIPCAHACAVLSELNLDSYAFVSDYYFSNTFSSTYKRSI 641

Query: 121 HPIGNEGSW 130
           HPIGN   W
Sbjct: 642 HPIGNHSDW 650

[Close]

BLAST of Lcy09g016200 vs. NCBI nr
Match: XP_038880504.1 (uncharacterized protein LOC120072166 [Benincasa hispida])

HSP 1 Score: 107.5 bits (267), Expect = 9.2e-20
Identity = 56/129 (43.41%), Postives = 74/129 (57.36%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           +L+ IR +LQ WF+E+          LT  AE ELRE  N   S +V+ +NN  Y+VIDG
Sbjct: 88  LLDYIREILQNWFYEKGQSTLSMKIVLTSWAEFELREQHNQSRSFKVDPINNEEYKVIDG 147

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFAVLTRKHLSINGYVSPFYSNSTLRCTYSGIV 120
            N   V+L  + CSC  WD ++I C HA AV+   +L I  +V  +Y  STL  TY G V
Sbjct: 148 DNHFLVNLAYKSCSCRVWDLVEIPCAHACAVICGLNLDIYTFVLDYYFCSTLLSTYKGSV 207

Query: 121 HPIGNEGSW 130
           +PIGN   W
Sbjct: 208 YPIGNHSDW 216

[Close]

BLAST of Lcy09g016200 vs. NCBI nr
Match: XP_022155207.1 (uncharacterized protein LOC111022347 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 6.6e-18
Identity = 55/132 (41.67%), Postives = 73/132 (55.30%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           MLEV+RM+LQRWF++R+NDVD+Q T  TKSAE +L E I+   +M+V  VNN +YQ    
Sbjct: 427 MLEVVRMMLQRWFYKRQNDVDFQITKFTKSAESKLSEQISACRTMKVYAVNNDIYQ---- 486

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFAVLTRKHLSINGYVSPFYSNSTLRCTYSGIV 120
                                             KHL   GYVS +YSN+ L  TYSG +
Sbjct: 487 ----------------------------------KHLPKKGYVSSYYSNNYLSSTYSGSI 520

Query: 121 HPIGNEGSWDIP 133
           HP+G++ SW+IP
Sbjct: 547 HPLGHQSSWNIP 520

[Close]

BLAST of Lcy09g016200 vs. NCBI nr
Match: XP_008465177.1 (PREDICTED: uncharacterized protein LOC103502841 [Cucumis melo] >KAA0037688.1 uncharacterized protein E6C27_scaffold1593G00110 [Cucumis melo var. makuwa] >TYK10685.1 uncharacterized protein E5676_scaffold25G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 8.6e-18
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 1   MLEVIRMLLQRWFFERKNDVDYQATYLTKSAELELREMINNGHSMQVNLVNNHLYQVIDG 60
           MLE +RM+LQRWFFE +ND +YQ T  TK+ E  LR+ I    S++VN VNN  YQVIDG
Sbjct: 59  MLEALRMMLQRWFFEWRNDAEYQVTDFTKTIESILRKQIELSRSVKVNPVNNMKYQVIDG 118

Query: 61  SNQHDVDLINRRCSCCKWDQLQILCFHAFAVLTRKH 97
            +Q+ + L  + CSC  WD L+I C H  AV T KH
Sbjct: 119 ISQYVIYLPTKVCSCRMWDILEIPCAHVCAVFTMKH 154

The following BLAST results are available for this feature:

BLAST of Lcy09g016200 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g016200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C328	2.5e-23	46.21	uncharacterized protein LOC111006994 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1DNQ8	3.2e-18	41.67	uncharacterized protein LOC111022347 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5D3CGP0	4.2e-18	53.13	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3CNA2	4.2e-18	53.13	uncharacterized protein LOC103502841 OS=Cucumis melo OX=3656 GN=LOC103502841 PE=...	[more]
A0A5D3DJR8	2.7e-17	40.63	MuDR family transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lcy09g016200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134813.1	5.2e-23	46.21	uncharacterized protein LOC111006994 [Momordica charantia]	[more]
XP_038907134.1	2.6e-22	42.64	uncharacterized protein LOC120092945 [Benincasa hispida]	[more]
XP_038880504.1	9.2e-20	43.41	uncharacterized protein LOC120072166 [Benincasa hispida]	[more]
XP_022155207.1	6.6e-18	41.67	uncharacterized protein LOC111022347 [Momordica charantia]	[more]
XP_008465177.1	8.6e-18	53.13	PREDICTED: uncharacterized protein LOC103502841 [Cucumis melo] >KAA0037688.1 unc...	[more]

BLAST of Lcy09g016200 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006564	Zinc finger, PMZ-type	SMART	SM00575	26again6	coord: 71..98 e-value: 0.0015 score: 25.8
IPR007527	Zinc finger, SWIM-type	PFAM	PF04434	SWIM	coord: 62..94 e-value: 6.0E-5 score: 22.6
IPR007527	Zinc finger, SWIM-type	PROSITE	PS50966	ZF_SWIM	coord: 55..96 score: 9.334374
None	No IPR available	PANTHER	PTHR31973:SF106	OS09G0268600 PROTEIN	coord: 1..125
None	No IPR available	PANTHER	PTHR31973	POLYPROTEIN, PUTATIVE-RELATED	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g016200.1	Lcy09g016200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding