Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCAAGAGGGTGGGCAATGGCAAATCTATTAATTTTTTTCTAGATCCATGGATACCGAAGGAAACTACTTTCAAACTGTTACCAATTGGTGAGGAGACAATCCCATGGGAGGCAAAAGTTTCAGATTTTATTACGCCGTCTTATGGATGGAATATGGATGAAAAACAACGCGTGACCCATGCAGGTGATGCAAAGATAGGGTATAAAGTTGCACTTCGTTTCGCTTCTAAACAGGTATCCTCAAGTGAGAATGCTGGCAGGATGTGGTGGAACACACTTTGGAAAGCTAAAATTCCATCCAAGATTAAGATTTTCATATGGAAAACATATAATGAATGTTTGCCGGTAAATTGGTGTTTGATGAGAAGGGGAATGGATGTATCGCCAATATGTGGAATGTGTTTGTCCAAAGTTGAAACTGTGGATCATGCTCTTAGTGGCTGTGCGCGAGCTAAGTTAATCTGTGGTCATATCTTTACAAGATATGATAAGGGTATCCGACAGGCGAACAACTTTGCCGATCGATTAGCTTATTTGGCAACTCATTTATCAGATGAGGTTTTTGAACGGGCTTACATAGCCTTTTGGGCTATATGGAATGACCGGAATAGTCACTCTAGAGGTTTGAAGATAATGGACTGGGACCAACGCTGTCAATGGATATGTGGGTATTGGGAGGAAACACGTCTGCCACGACATTCTTTAGTCAAGGAGATAGCGTTTCAAGATGTTGTTCGAAACTCCCATGAGCAGGTTTACAAGTTGTTCACTGATGCGGCGGTTAACCCACACAACACTGGTGCAGGGTATGGTATGGTGATTTTGGGTCCTCATGGCACACTAATAGCGGCAATGGAGATGTTTGACTCAACGTGTTTTACTCCGTTAGCAACTGAGGTTCAAGCAATTCTACATGGAATTCGACTAGTACAACGTCTGCAATACACGACGGTAAAAATTGTTTCAGATTCTCTGATTGCGATACAAATGATATCAGGTGAATTGCCAATTTCATCTGAGGTCTATCACTGGATTGTCCGAATCCAAGAGCTAAGTGCCCATTTTTCCAATTCATCGTTCTCTCATATTCCTAGAGAAGGGAATAGAATGGCAGATTCATTAGCAAAGCATGCTTTGGCTAATAGTAGGTCTTTGTTGTGGTTGTCAGATTTCCCACCTTGACTTTTATCCATGGGAATGACAACTTCAGACAAATGTATTTTGGATTGTAATTGTTTATGTTAATGATAAATGTTTCTTTCCTAAAAAAAAAAAAAAAAAAAATTATCAAATGTTCCCTAAAGGATATTTTTAAAGTATTATTCACATAACTTCCTAAATGCTAAAAAAATCATTAAAATAAAGCAAATGAAATGATAACAAATAAACTAAACTTTATAAAAAAAACAAACATGGAAAAAATAATTTCATAAAAAAAAAAAACTATTGGAGAAATAATTAAAAGAAAAATGTTTTAAAACATACTTATAATGTGTGAAATGAACCAACCTGGAAGGCATGTGGACACCCATATAGACTATATAACTCTAGGGATTTATTTCCTTTAGGCTTCTCCTTGTGCGCAACTGCCTTGCTCTTCAACGCATTCTTCAGGTTCTTAATAGTCTTCTTAAATATCATTGTGCTCTAATCATAGTTGCATAA
mRNA sequence
ATGCGCAAGAGGGTGGGCAATGGCAAATCTATTAATTTTTTTCTAGATCCATGGATACCGAAGGAAACTACTTTCAAACTGTTACCAATTGGTGAGGAGACAATCCCATGGGAGGCAAAAGTTTCAGATTTTATTACGCCGTCTTATGGATGGAATATGGATGAAAAACAACGCGTGACCCATGCAGGTGATGCAAAGATAGGGTATAAAGTTGCACTTCGTTTCGCTTCTAAACAGGTATCCTCAAGTGAGAATGCTGGCAGGATGTGGTGGAACACACTTTGGAAAGCTAAAATTCCATCCAAGATTAAGATTTTCATATGGAAAACATATAATGAATGTTTGCCGGTAAATTGGTGTTTGATGAGAAGGGGAATGGATGTATCGCCAATATGTGGAATGTGTTTGTCCAAAGTTGAAACTGTGGATCATGCTCTTAGTGGCTGTGCGCGAGCTAAGTTAATCTGTGGTCATATCTTTACAAGATATGATAAGGGTATCCGACAGGCGAACAACTTTGCCGATCGATTAGCTTATTTGGCAACTCATTTATCAGATGAGGTTTTTGAACGGGCTTACATAGCCTTTTGGGCTATATGGAATGACCGGAATAGTCACTCTAGAGGTTTGAAGATAATGGACTGGGACCAACGCTGTCAATGGATATGTGGGTATTGGGAGGAAACACGTCTGCCACGACATTCTTTAGTCAAGGAGATAGCGTTTCAAGATGTTGTTCGAAACTCCCATGAGCAGGTTCTTAATAGTCTTCTTAAATATCATTGTGCTCTAATCATAGTTGCATAA
Coding sequence (CDS)
ATGCGCAAGAGGGTGGGCAATGGCAAATCTATTAATTTTTTTCTAGATCCATGGATACCGAAGGAAACTACTTTCAAACTGTTACCAATTGGTGAGGAGACAATCCCATGGGAGGCAAAAGTTTCAGATTTTATTACGCCGTCTTATGGATGGAATATGGATGAAAAACAACGCGTGACCCATGCAGGTGATGCAAAGATAGGGTATAAAGTTGCACTTCGTTTCGCTTCTAAACAGGTATCCTCAAGTGAGAATGCTGGCAGGATGTGGTGGAACACACTTTGGAAAGCTAAAATTCCATCCAAGATTAAGATTTTCATATGGAAAACATATAATGAATGTTTGCCGGTAAATTGGTGTTTGATGAGAAGGGGAATGGATGTATCGCCAATATGTGGAATGTGTTTGTCCAAAGTTGAAACTGTGGATCATGCTCTTAGTGGCTGTGCGCGAGCTAAGTTAATCTGTGGTCATATCTTTACAAGATATGATAAGGGTATCCGACAGGCGAACAACTTTGCCGATCGATTAGCTTATTTGGCAACTCATTTATCAGATGAGGTTTTTGAACGGGCTTACATAGCCTTTTGGGCTATATGGAATGACCGGAATAGTCACTCTAGAGGTTTGAAGATAATGGACTGGGACCAACGCTGTCAATGGATATGTGGGTATTGGGAGGAAACACGTCTGCCACGACATTCTTTAGTCAAGGAGATAGCGTTTCAAGATGTTGTTCGAAACTCCCATGAGCAGGTTCTTAATAGTCTTCTTAAATATCATTGTGCTCTAATCATAGTTGCATAA
Protein sequence
MRKRVGNGKSINFFLDPWIPKETTFKLLPIGEETIPWEAKVSDFITPSYGWNMDEKQRVTHAGDAKIGYKVALRFASKQVSSSENAGRMWWNTLWKAKIPSKIKIFIWKTYNECLPVNWCLMRRGMDVSPICGMCLSKVETVDHALSGCARAKLICGHIFTRYDKGIRQANNFADRLAYLATHLSDEVFERAYIAFWAIWNDRNSHSRGLKIMDWDQRCQWICGYWEETRLPRHSLVKEIAFQDVVRNSHEQVLNSLLKYHCALIIVA
Homology
BLAST of Lcy09g015910 vs. ExPASy Swiss-Prot
Match:
P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 48.5 bits (114), Expect = 1.4e-04
Identity = 19/60 (31.67%), Postives = 33/60 (55.00%), Query Frame = 0
Query: 90 WWNTLWKAKIPSKIKIFIWKTYNECLPVNWCLMRRGMDVSPICGMCLSKVETVDHALSGC 149
++N LWK ++P ++K F+W N+ + RR + S +C +C VE++ H L C
Sbjct: 287 FFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDC 346
BLAST of Lcy09g015910 vs. ExPASy TrEMBL
Match:
A0A803NZC3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 131.3 bits (329), Expect = 5.9e-27
Identity = 76/243 (31.28%), Postives = 111/243 (45.68%), Query Frame = 0
Query: 1 MRKRVGNGKSINFFLDPWIPKETTFKLLPIGEETIPWEAKVSDFITPSYGWNMDEKQRVT 60
+R +VG+G+SI DPW+P T F+ P+ I KVS ITP WN+D
Sbjct: 896 LRWKVGDGQSITCRYDPWLPGVTNFQ--PLVVTDIDLHLKVSSLITPERIWNIDLLNSYF 955
Query: 61 HAGD-----AKIGYKVALRFASKQVSSSENAGRMWWNTLWKAKIPSKIKIFIWKTYNECL 120
D K GY +A +Q S S + WW WK +PSK++IF+W+ ++ L
Sbjct: 956 IPSDIERILIKSGYFLATNLEEQQPSISGMQSQQWWKKFWKLNLPSKVRIFLWRAIHDYL 1015
Query: 121 PVNWCLMRRGMDVSPICGMCLSKVETVDHALSGCARAKLICGHIFTRYDKGIRQANNFAD 180
P L R + SP C +C S+ ET+ HAL C R K I + +
Sbjct: 1016 PATAILFHRHIAESPCCLLCKSESETIMHALFYCHRPKHIWKDSSFPLGSILASGMTLKE 1075
Query: 181 RLAYLATHLSDEVFERAYIAFWAIWNDRNSHSRGLKIMDWDQRCQWICGYWEETRLPRHS 239
L +++T SD E+ W IWN+ N+ G KI + + + EE + + S
Sbjct: 1076 CLLHISTIWSDTKIEQFITILWHIWNEMNNGKHGNKIKPHEMVLYFALSFLEEFQAAQQS 1135
BLAST of Lcy09g015910 vs. ExPASy TrEMBL
Match:
A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)
HSP 1 Score: 131.0 bits (328), Expect = 7.7e-27
Identity = 79/287 (27.53%), Postives = 129/287 (44.95%), Query Frame = 0
Query: 1 MRKRVGNGKSINFFLDPWIPKETTFKLLPIGEETIPWEAKVSDFITPSYGWNMDEKQRVT 60
+R RVGNG +I F DPW+P+ TTFK L + + V+ FIT W++ ++
Sbjct: 1015 LRLRVGNGSTIKAFSDPWLPRPTTFKPLRFNNGAL--DTTVASFITADGNWDVTS---IS 1074
Query: 61 HA--------------------------------GDAKIGYKVALRFASKQVSSSENAGR 120
H+ + GYK+ + S+S N
Sbjct: 1075 HSFCNEDRDLILSMPISSYNLQDSWLWHYDKRGNYSVRSGYKLYMHLKCNATSASTNYRG 1134
Query: 121 MWWNTLWKAKIPSKIKIFIWKTYNECLPVNWCLMRRGMDVSPICGMCLSKVETVDHALSG 180
WN++WK +P+KIKIFIW++ +E +P L+ RG+ P C +C + E++ HA
Sbjct: 1135 TQWNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGIGELPACTICGDRRESIIHAFFH 1194
Query: 181 CARAKLICGHIFTRYDKGIRQAN-NFADRLAYLATHLSDEVFERAYIAFWAIWNDRNSHS 240
C RA+ I +F + N +F + + L L + A I W IWNDRNS
Sbjct: 1195 CKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLI 1254
Query: 241 RGLKIMDWDQRCQWICGYWEETRLPRHSLVKEIAFQDVVRNSHEQVL 255
G ++ + +C+W+ + L HS + + +++H V+
Sbjct: 1255 HGKQVSPVEFKCEWLTPF-----LDSHSQAQMSNYSPRTQSNHRPVV 1291
BLAST of Lcy09g015910 vs. ExPASy TrEMBL
Match:
A0A803Q2K8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 128.3 bits (321), Expect = 5.0e-26
Identity = 75/238 (31.51%), Postives = 116/238 (48.74%), Query Frame = 0
Query: 1 MRKRVGNGKSINFFLDPWIPKETTFKLLPIGEETIPWEAKVSDFITPSYGWNM------- 60
+R RVG+G SIN D W+P TTFK P + V+D IT W++
Sbjct: 1293 LRWRVGSGLSINCATDAWLPGTTTFK--PYFFKGADPNLLVADLITEQRQWDLISLRANF 1352
Query: 61 ------------------DEKQRVTHA----GDAKIGYKVALRFASKQVSSSENAGRMWW 120
D+ +H+ + K GY++A+ +A + ++S ++ WW
Sbjct: 1353 SQPDVDRILSIPLSLFPHDDAMIWSHSFTGIYNVKSGYQLAVSYAEQDDTASSHSMENWW 1412
Query: 121 NTLWKAKIPSKIKIFIWKTYNECLPVNWCLMRRGMDVSPICGMCLSKVETVDHALSGCAR 180
+T WK K+P K++IF+WK ++ LPV L RR + SP C +C S E+++HAL C R
Sbjct: 1413 STFWKMKLPPKVRIFVWKVFHSTLPVAAELFRRHIATSPHCSICNSAEESINHALFDCPR 1472
Query: 181 AKLICGHIFTRYDKGIRQANNFADRLAYLATHLSDEVFERAYIAFWAIWNDRNSHSRG 210
AK + D + + AD L +L+T LS FE + W W++RN+ G
Sbjct: 1473 AKAVWELSSLHIDFHTLRQSASADILLHLSTALSTSEFELFLVLCWCNWHERNAIYHG 1528
BLAST of Lcy09g015910 vs. ExPASy TrEMBL
Match:
A0A803Q6Z2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 123.2 bits (308), Expect = 1.6e-24
Identity = 76/259 (29.34%), Postives = 112/259 (43.24%), Query Frame = 0
Query: 1 MRKRVGNGKSINFFLDPWIPKETTFKLLPIGEETIPWEAKVSDFITPSYGWNMDEKQRVT 60
+R R+G+G +N PWIP + FK P+ + + KV+DFIT S W++ + Q+
Sbjct: 1659 LRWRIGSGADVNCVSQPWIPGPSNFK--PLLFLSPDRDVKVADFITHSRQWDVPKLQQFF 1718
Query: 61 HAGD-----------------------------AKIGYKVALRFASKQVSSSENAGRMWW 120
D K GYK+A Q +SS WW
Sbjct: 1719 TPPDVDRILSIPLSLFPCEDVLLWHYSSAGFYTVKSGYKLASDVPDSQPNSSHTT-ETWW 1778
Query: 121 NTLWKAKIPSKIKIFIWKTYNECLPVNWCLMRRGMDVSPICGMCLSKVETVDHALSGCAR 180
W K+PSKI+IF W+ Y+E LP L R + SP C +C +ET++HA C R
Sbjct: 1779 QYFWGLKLPSKIRIFAWRAYHEALPTAAILQYRHISSSPQCPLCQVHLETINHAFFWCNR 1838
Query: 181 AKLICGHIFTRYDKGIRQANNFADRLAYLATHLSDEVFERAYIAFWAIWNDRNSHSRGLK 231
AK + + + + +F+D L Y+++ L E E W IW RN+ +
Sbjct: 1839 AKQVWKNWDESINWSLSMTCSFSDFLVYVSSQLQAEKVELFLTTLWCIWTARNAETHSKS 1898
BLAST of Lcy09g015910 vs. ExPASy TrEMBL
Match:
A0A803QAN3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 120.6 bits (301), Expect = 1.0e-23
Identity = 72/234 (30.77%), Postives = 104/234 (44.44%), Query Frame = 0
Query: 1 MRKRVGNGKSINFFLDPWIPKETTFKLLP-IGEETIPWEAKVSDFITPSYGWNMD----- 60
MR ++G G +I DPWIP T FK + G T+P VS FIT WN+D
Sbjct: 781 MRYKIGKGVNIATGTDPWIPSYTNFKPVSYTGPPTLP----VSTFITDQMEWNIDMLNEF 840
Query: 61 -------------------EKQRVTHAG-----DAKIGYKVALRFASKQVSSSENAGRMW 120
+ + + H + K G+ +A + +SS+ + R W
Sbjct: 841 FQPIDVDKILSIPLSFFGGQDRLIWHHSSSGIYNVKSGFHLATSLEEQHISSTSDPHRDW 900
Query: 121 WNTLWKAKIPSKIKIFIWKTYNECLPVNWCLMRRGMDVSPICGMCLSKVETVDHALSGCA 180
W W +P K++IF WK ++ LPV L ++ + S C +C S E++ HAL GC
Sbjct: 901 WRYFWNLNLPPKVRIFAWKVFHNILPVAAALFKKKIIDSAACSLCTSNWESIGHALFGCK 960
Query: 181 RAKLICGHIFTRYDKGIRQANNFADRLAYLATHLSDEVFERAYIAFWAIWNDRN 205
AK I D Q+ D L YL++ + E FE W IW+DRN
Sbjct: 961 HAKGIWTDSKFSLDYHKAQSMFNGDYLLYLSSMYNQEDFELLICIMWGIWSDRN 1010
BLAST of Lcy09g015910 vs. NCBI nr
Match:
XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])
HSP 1 Score: 131.0 bits (328), Expect = 1.6e-26
Identity = 79/287 (27.53%), Postives = 129/287 (44.95%), Query Frame = 0
Query: 1 MRKRVGNGKSINFFLDPWIPKETTFKLLPIGEETIPWEAKVSDFITPSYGWNMDEKQRVT 60
+R RVGNG +I F DPW+P+ TTFK L + + V+ FIT W++ ++
Sbjct: 1015 LRLRVGNGSTIKAFSDPWLPRPTTFKPLRFNNGAL--DTTVASFITADGNWDVTS---IS 1074
Query: 61 HA--------------------------------GDAKIGYKVALRFASKQVSSSENAGR 120
H+ + GYK+ + S+S N
Sbjct: 1075 HSFCNEDRDLILSMPISSYNLQDSWLWHYDKRGNYSVRSGYKLYMHLKCNATSASTNYRG 1134
Query: 121 MWWNTLWKAKIPSKIKIFIWKTYNECLPVNWCLMRRGMDVSPICGMCLSKVETVDHALSG 180
WN++WK +P+KIKIFIW++ +E +P L+ RG+ P C +C + E++ HA
Sbjct: 1135 TQWNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGIGELPACTICGDRRESIIHAFFH 1194
Query: 181 CARAKLICGHIFTRYDKGIRQAN-NFADRLAYLATHLSDEVFERAYIAFWAIWNDRNSHS 240
C RA+ I +F + N +F + + L L + A I W IWNDRNS
Sbjct: 1195 CKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLI 1254
Query: 241 RGLKIMDWDQRCQWICGYWEETRLPRHSLVKEIAFQDVVRNSHEQVL 255
G ++ + +C+W+ + L HS + + +++H V+
Sbjct: 1255 HGKQVSPVEFKCEWLTPF-----LDSHSQAQMSNYSPRTQSNHRPVV 1291
BLAST of Lcy09g015910 vs. NCBI nr
Match:
XP_030508852.1 (uncharacterized protein LOC115723496 [Cannabis sativa])
HSP 1 Score: 125.6 bits (314), Expect = 6.6e-25
Identity = 78/238 (32.77%), Postives = 110/238 (46.22%), Query Frame = 0
Query: 1 MRKRVGNGKSINFFLDPWIPKETTFKLLPIGEETIPWEAKVSDFITPSYGWNM------- 60
+R RVG+G+ IN D W+P TTFK P + V+D IT W+M
Sbjct: 935 LRWRVGSGERINCKTDSWLPGHTTFK--PYFFKGPDPNLLVADLITEHRTWDMISLETNF 994
Query: 61 ------------------DE----KQRVTHAGDAKIGYKVALRFASKQVSSSENAGRMWW 120
D+ Q T + K GY A+ A + S+ N+ WW
Sbjct: 995 NQADINRVLSIPLSPYPHDDVLIWNQSFTGVYNVKSGYHFAVSLAEQDDSTCSNSIEHWW 1054
Query: 121 NTLWKAKIPSKIKIFIWKTYNECLPVNWCLMRRGMDVSPICGMCLSKVETVDHALSGCAR 180
+ WK K+P K++IF+WK ++ LPV L RR + SP C +C S ETV HAL C R
Sbjct: 1055 SNFWKLKLPPKVRIFVWKVFHTSLPVAAELYRRHIAFSPYCTICNSCEETVHHALFSCPR 1114
Query: 181 AKLICGHIFTRYDKGIRQANNFADRLAYLATHLSDEVFERAYIAFWAIWNDRNSHSRG 210
AK + D + ++ AD L L+T LS E + W+IW++RN+ G
Sbjct: 1115 AKAVWELSNFSIDFQTIERSSTADTLLLLSTSLSSSELELFLVLCWSIWHERNAIYHG 1170
BLAST of Lcy09g015910 vs. NCBI nr
Match:
XP_030502765.1 (uncharacterized protein LOC115717936 [Cannabis sativa])
HSP 1 Score: 123.6 bits (309), Expect = 2.5e-24
Identity = 72/238 (30.25%), Postives = 111/238 (46.64%), Query Frame = 0
Query: 1 MRKRVGNGKSINFFLDPWIPKETTFKLLPIGEETIPWEAKVSDFITPSYGWNMDEKQ--- 60
+R RVG+G +IN D W+P TTFK P + V+D I+ W++ Q
Sbjct: 824 LRWRVGSGLTINCATDAWMPGNTTFK--PYFFKGADPNLMVADLISEQRQWDLISLQANF 883
Query: 61 --------------------------RVTHAGDAKIGYKVALRFASKQVSSSENAGRMWW 120
T + K GY++A+ A + ++S ++ WW
Sbjct: 884 SQADVDRILSIPLSLFPHDDVLIWSHSFTGIYNVKSGYQLAVSLAEQDDTASSSSMEHWW 943
Query: 121 NTLWKAKIPSKIKIFIWKTYNECLPVNWCLMRRGMDVSPICGMCLSKVETVDHALSGCAR 180
+T WK KIP K++IF+WK ++ LPV L RR + SP C +C S E++ HAL C R
Sbjct: 944 STFWKVKIPPKVRIFVWKVFHSTLPVAAELYRRHIATSPYCTICNSAEESITHALFSCPR 1003
Query: 181 AKLICGHIFTRYDKGIRQANNFADRLAYLATHLSDEVFERAYIAFWAIWNDRNSHSRG 210
AK + D + AD L +L+T L+ +E+ + W W++RN+ G
Sbjct: 1004 AKTVWDLSPLNIDFNTLRQTASADILLHLSTVLTTSEYEQFLVICWCNWHERNAIYHG 1059
BLAST of Lcy09g015910 vs. NCBI nr
Match:
XP_030509050.1 (uncharacterized protein LOC115723712 [Cannabis sativa])
HSP 1 Score: 123.2 bits (308), Expect = 3.3e-24
Identity = 76/259 (29.34%), Postives = 112/259 (43.24%), Query Frame = 0
Query: 1 MRKRVGNGKSINFFLDPWIPKETTFKLLPIGEETIPWEAKVSDFITPSYGWNMDEKQRVT 60
+R R+G+G +N PWIP + FK P+ + + KV+DFIT S W++ + Q+
Sbjct: 935 LRWRIGSGADVNCVSQPWIPGPSNFK--PLLFLSPDRDVKVADFITHSRQWDVPKLQQFF 994
Query: 61 HAGD-----------------------------AKIGYKVALRFASKQVSSSENAGRMWW 120
D K GYK+A Q +SS WW
Sbjct: 995 TPPDVDRILSIPLSLFPCEDVLLWHYSSAGFYTVKSGYKLASDVPDSQPNSSHTT-ETWW 1054
Query: 121 NTLWKAKIPSKIKIFIWKTYNECLPVNWCLMRRGMDVSPICGMCLSKVETVDHALSGCAR 180
W K+PSKI+IF W+ Y+E LP L R + SP C +C +ET++HA C R
Sbjct: 1055 QYFWGLKLPSKIRIFAWRAYHEALPTAAILQYRHISSSPQCPLCQVHLETINHAFFWCNR 1114
Query: 181 AKLICGHIFTRYDKGIRQANNFADRLAYLATHLSDEVFERAYIAFWAIWNDRNSHSRGLK 231
AK + + + + +F+D L Y+++ L E E W IW RN+ +
Sbjct: 1115 AKQVWKNWDESINWSLSMTCSFSDFLVYVSSQLQAEKVELFLTTLWCIWTARNAETHSKS 1174
BLAST of Lcy09g015910 vs. NCBI nr
Match:
XP_030509046.1 (uncharacterized protein LOC115723707 [Cannabis sativa])
HSP 1 Score: 120.2 bits (300), Expect = 2.8e-23
Identity = 81/291 (27.84%), Postives = 118/291 (40.55%), Query Frame = 0
Query: 1 MRKRVGNGKSINFFLDPWIPKETTFKLLPIGEETIPWEAKVSDFITPSYGWNMDEKQR-- 60
+R ++GNG + L+PWIP FK PI P VS +I + WN+ + +
Sbjct: 635 LRYKIGNGFHVRSGLNPWIPGHDEFK--PISYTRDP-STPVSTYILDTMEWNLPQLHQDF 694
Query: 61 ----------------------VTHAGD-----AKIGYKVALRFASKQVSSSENAGRMWW 120
+ H + K G+ +A + K SS + + WW
Sbjct: 695 AQIDIDRILTIPLSFYQSSDRLIWHHNNNGFYSVKSGFHLATSLSEKDQESSSDDYKTWW 754
Query: 121 NTLWKAKIPSKIKIFIWKTYNECLPVNWCLMRRGMDVSPICGMCLSKVETVDHALSGCAR 180
WK +P K+KIF WK LPV L +R + S +C C S E++ HAL C
Sbjct: 755 KFFWKLHLPPKVKIFTWKVIQNALPVTTALHKRKVIDSALCTRCKSAWESIGHALFSCKF 814
Query: 181 AKLICGHIFTRYDKGIRQANNFADRLAYLATHLSDEVFERAYIAFWAIWNDRNSHSRGLK 240
AK I + + D D L +LA+ + E FE W+IWNDRN G K
Sbjct: 815 AKSIWKNTKFQIDTHHAMGMFNGDYLIHLASTMDKENFEALICVMWSIWNDRNKFLHGGK 874
Query: 241 IMDWDQRCQWICGYWEETRLPR----------HSLVKEIAFQDVVRNSHEQ 253
D + Y E+ R + H + IA R++H+Q
Sbjct: 875 QRDSFTLASYALNYIEQYRSAKRISCTKLQQPHQQINHIA-TPTSRSTHQQ 921
BLAST of Lcy09g015910 vs. TAIR 10
Match:
AT3G26855.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 54.7 bits (130), Expect = 1.3e-07
Identity = 25/64 (39.06%), Postives = 32/64 (50.00%), Query Frame = 0
Query: 90 WWNTLWKAKIPSKIKIFIWKTYNECLPVNWCLMRRGMDVSPICGMCLSKVETVDHALSGC 149
W +W KI KIK+ IWK N LPV L+ R + + P C C ET+ H L C
Sbjct: 5 WIGDIWSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFCTRC-RDFETITHILFNC 64
Query: 150 ARAK 154
A+
Sbjct: 65 PFAQ 67
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P0C2F6 | 1.4e-04 | 31.67 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... | [more] |
Match Name | E-value | Identity | Description | |
A0A803NZC3 | 5.9e-27 | 31.28 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A6J1DX30 | 7.7e-27 | 27.53 | uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
A0A803Q2K8 | 5.0e-26 | 31.51 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803Q6Z2 | 1.6e-24 | 29.34 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803QAN3 | 1.0e-23 | 30.77 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT3G26855.1 | 1.3e-07 | 39.06 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |