Lcy09g015560 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g015560
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	zf-RVT domain-containing protein
Location	Chr09: 23158298 .. 23158976 (-)
RNA-Seq Expression	Lcy09g015560
Synteny	Lcy09g015560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGATGGCCCCTCAACCCAAATGGTTCTTTTTCCTCAAAATCCCTCCTCTTTGACATGACGGGCAATATTAGTCTCATTGAGCCATATTTGGCAAAGATTATATGGAGAGACAATTACCCAAAGAAGATTAAATTCTTTCTCTGGGAACTAGCCCACAAATCCATCAACACAAATGAGGTTCTCCAGAGACGCATGCCTTACATGTCCCTTTCCCCTGGATGGTGCTCTTTATGTAAATCTAGTGATGAATTGCAGGAACACATTTTTGCTATTTGCCCCCTTGCTTGGAATTTCTGGAGTAGGATCACAAAGTCTTTTGGGTGGTCCATGTCTCTCTTGGATAATATGGGGGATATCCTTGCCTCCGTTATGTTGGGTCATCCTTTCATCAACATCAAAGGCCTTTTATGGATGAACATCGCTAGAGCTTTCTTTTGGGTCTTATGGAAAGAAAGAAATCGAAGAGTTTTCCAAGGAATAGATCCCTCTTTTGATGCTTTTTTTGACATTGTTATATACTATGCTATCTCTTGATGTAAACTCTCTCCCCTTCTTGCTTCGTACACATATACTTCCCTTCTAAATAGTTGGGAAAGTCTTTTGTAATCTCTATGGATCTTGTATCCCTTTTGTAAATTTCATACATCAATGAAATTGTTTCTTATAAAAAAAACTTCT

mRNA sequence

GAGATGGCCCCTCAACCCAAATGGTTCTTTTTCCTCAAAATCCCTCCTCTTTGACATGACGGGCAATATTAGTCTCATTGAGCCATATTTGGCAAAGATTATATGGAGAGACAATTACCCAAAGAAGATTAAATTCTTTCTCTGGGAACTAGCCCACAAATCCATCAACACAAATGAGGTTCTCCAGAGACGCATGCCTTACATGTCCCTTTCCCCTGGATGGTGCTCTTTATGTAAATCTAGTGATGAATTGCAGGAACACATTTTTGCTATTTGCCCCCTTGCTTGGAATTTCTGGAGTAGGATCACAAAGTCTTTTGGGTGGTCCATGTCTCTCTTGGATAATATGGGGGATATCCTTGCCTCCGTTATGTTGGGTCATCCTTTCATCAACATCAAAGGCCTTTTATGGATGAACATCGCTAGAGCTTTCTTTTGGGTCTTATGGAAAGAAAGAAATCGAAGAGTTTTCCAAGGAATAGATCCCTCTTTTGATGCTTTTTTTGACATTGTTATATACTATGCTATCTCTTGATGTAAACTCTCTCCCCTTCTTGCTTCGTACACATATACTTCCCTTCTAAATAGTTGGGAAAGTCTTTTGTAATCTCTATGGATCTTGTATCCCTTTTGTAAATTTCATACATCAATGAAATTGTTTCTTATAAAAAAAACTTCT

Coding sequence (CDS)

ATGACGGGCAATATTAGTCTCATTGAGCCATATTTGGCAAAGATTATATGGAGAGACAATTACCCAAAGAAGATTAAATTCTTTCTCTGGGAACTAGCCCACAAATCCATCAACACAAATGAGGTTCTCCAGAGACGCATGCCTTACATGTCCCTTTCCCCTGGATGGTGCTCTTTATGTAAATCTAGTGATGAATTGCAGGAACACATTTTTGCTATTTGCCCCCTTGCTTGGAATTTCTGGAGTAGGATCACAAAGTCTTTTGGGTGGTCCATGTCTCTCTTGGATAATATGGGGGATATCCTTGCCTCCGTTATGTTGGGTCATCCTTTCATCAACATCAAAGGCCTTTTATGGATGAACATCGCTAGAGCTTTCTTTTGGGTCTTATGGAAAGAAAGAAATCGAAGAGTTTTCCAAGGAATAGATCCCTCTTTTGATGCTTTTTTTGACATTGTTATATACTATGCTATCTCTTGA

Protein sequence

MTGNISLIEPYLAKIIWRDNYPKKIKFFLWELAHKSINTNEVLQRRMPYMSLSPGWCSLCKSSDELQEHIFAICPLAWNFWSRITKSFGWSMSLLDNMGDILASVMLGHPFINIKGLLWMNIARAFFWVLWKERNRRVFQGIDPSFDAFFDIVIYYAIS

Homology

[Close]

BLAST of Lcy09g015560 vs. ExPASy TrEMBL
Match: A5AIV6 (zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_028992 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 5.7e-22
Identity = 50/145 (34.48%), Postives = 76/145 (52.41%), Query Frame = 0


Query: 13  AKIIWRDNYPKKIKFFLWELAHKSINTNEVLQRRMPYMSLSPGWCSLCKSSDELQEHIFA 72
           AK +W    P K+K   W +AH  +NTN+ LQ R PY SL P WC LCK + E  +H+F 
Sbjct: 124 AKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGNGESIDHLFL 183

Query: 73  ICPLAWNFWSRITKSFGWSMSLLDNMGDILASVMLGHPFINIKGLLWMNIARAFFWVLWK 132
            CP+    W+++ K  G    L  +  D+L     G         LW      F W++W+
Sbjct: 184 HCPVTIGLWNKLFKLAGLVWVLSRSFEDMLVIAFKGLGNSLRGKTLWQVACLTFVWIVWQ 243

Query: 133 ERNRRVFQGIDPSFDAFFDIVIYYA 158
           ERN R+F+    S +  +D++++Y+
Sbjct: 244 ERNNRIFEDKGRSEETLWDLILFYS 268

[Close]

BLAST of Lcy09g015560 vs. ExPASy TrEMBL
Match: A0A438GQT9 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_923 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-21
Identity = 51/128 (39.84%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 14  KIIWRDNYPKKIKFFLWELAHKSINTNEVLQRRMPYMSLSPGWCSLCKSSDELQEHIFAI 73
           K +W    P K+K F+W +AHK +NTN++LQ R PY +LSP  C LC    E  +H+F  
Sbjct: 545 KFVWNAQVPFKVKSFVWLVAHKKVNTNDLLQLRRPYKALSPDICKLCMKHGETVDHLFLH 604

Query: 74  CPLAWNFWSRITKSFGWSMSLLDNMGDILASVMLGHPFINIKGLLWMNIARAFFWVLWKE 133
           C L    W R+ +S         ++ D+LAS   G  F     +LW N   A  WV+W+E
Sbjct: 605 CSLTIGLWHRLFQSAKMDWVSPRSISDMLASNFNGFGFSKRGIVLWQNACIALMWVVWRE 664

Query: 134 RNRRVFQG 142
           RN R+F+G
Sbjct: 665 RNARIFRG 672

[Close]

BLAST of Lcy09g015560 vs. ExPASy TrEMBL
Match: A0A438CR03 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_568 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.7e-21
Identity = 51/142 (35.92%), Postives = 77/142 (54.23%), Query Frame = 0


Query: 14   KIIWRDNYPKKIKFFLWELAHKSINTNEVLQRRMPYMSLSPGWCSLCKSSDELQEHIFAI 73
            K +W    P K+K F+W +AHK +NTN++LQ R PY +LSP  C LC    E  +H+F  
Sbjct: 938  KFVWNAQVPFKVKSFVWLVAHKKVNTNDLLQLRRPYKALSPDICKLCMKHGETVDHLFLH 997

Query: 74   CPLAWNFWSRITKSFGWSMSLLDNMGDILASVMLGHPFINIKGLLWMNIARAFFWVLWKE 133
            C L    W R+ +S         ++ D+LAS   G  F     +LW N   A  WV+W+E
Sbjct: 998  CSLTIGLWHRLFQSAKMDWVSPRSISDMLASNFNGFGFSKRGIVLWQNACIALMWVVWRE 1057

Query: 134  RNRRVFQGIDPSFDAFFDIVIY 156
            RN R+F+    + +  +D +++
Sbjct: 1058 RNARIFEDKARNSEYLWDSIVF 1079

[Close]

BLAST of Lcy09g015560 vs. ExPASy TrEMBL
Match: A5AG22 (zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_040551 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.2e-21
Identity = 50/127 (39.37%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 14  KIIWRDNYPKKIKFFLWELAHKSINTNEVLQRRMPYMSLSPGWCSLCKSSDELQEHIFAI 73
           K +W    P K+K F+W +AHK +NTN++LQ R PY +LSP  C LC    E  +H+F  
Sbjct: 401 KFVWNAQVPFKVKSFVWLVAHKKVNTNDLLQLRRPYKTLSPDICKLCMKHGETVDHLFLH 460

Query: 74  CPLAWNFWSRITKSFGWSMSLLDNMGDILASVMLGHPFINIKGLLWMNIARAFFWVLWKE 133
           C L    W R+ +S       L ++ D+L+S   G  F     +LW N   A  WV+W+E
Sbjct: 461 CSLTIGLWHRLFQSAKMDWVSLRSISDMLSSNFNGFGFSKRGIVLWQNACIAIMWVVWRE 520

Query: 134 RNRRVFQ 141
           RN R+F+
Sbjct: 521 RNARIFE 527

[Close]

BLAST of Lcy09g015560 vs. ExPASy TrEMBL
Match: A0A438EGK9 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_792 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.9e-21
Identity = 51/158 (32.28%), Postives = 80/158 (50.63%), Query Frame = 0


Query: 3   GNISLIEPYL---AKIIWRDNYPKKIKFFLWELAHKSINTNEVLQRRMPYMSLSPGWCSL 62
           G++ +  P L   AK +W    P K+K   W +AH  +NTN+ LQ R PY SL P WC L
Sbjct: 720 GHVKVSNPILFLPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKSLCPQWCIL 779

Query: 63  CKSSDELQEHIFAICPLAWNFWSRITKSFGWSMSLLDNMGDILASVMLGHPFINIKGLLW 122
           CK + E  +H+F  CP+    W+++ K  G       +  D+L     G         LW
Sbjct: 780 CKGNGESIDHLFLHCPVTIGLWNKLFKLAGLDWVPPRSFEDMLVIAFKGLGNSLRGKTLW 839

Query: 123 MNIARAFFWVLWKERNRRVFQGIDPSFDAFFDIVIYYA 158
                   W++W+ERN R+F+    S +  +D++++Y+
Sbjct: 840 QVACLTLVWIVWQERNNRIFEDKGRSEETLWDLILFYS 877

[Close]

BLAST of Lcy09g015560 vs. NCBI nr
Match: CAN73452.1 (hypothetical protein VITISV_028992 [Vitis vinifera])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-21
Identity = 50/145 (34.48%), Postives = 76/145 (52.41%), Query Frame = 0


Query: 13  AKIIWRDNYPKKIKFFLWELAHKSINTNEVLQRRMPYMSLSPGWCSLCKSSDELQEHIFA 72
           AK +W    P K+K   W +AH  +NTN+ LQ R PY SL P WC LCK + E  +H+F 
Sbjct: 124 AKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGNGESIDHLFL 183

Query: 73  ICPLAWNFWSRITKSFGWSMSLLDNMGDILASVMLGHPFINIKGLLWMNIARAFFWVLWK 132
            CP+    W+++ K  G    L  +  D+L     G         LW      F W++W+
Sbjct: 184 HCPVTIGLWNKLFKLAGLVWVLSRSFEDMLVIAFKGLGNSLRGKTLWQVACLTFVWIVWQ 243

Query: 133 ERNRRVFQGIDPSFDAFFDIVIYYA 158
           ERN R+F+    S +  +D++++Y+
Sbjct: 244 ERNNRIFEDKGRSEETLWDLILFYS 268

[Close]

BLAST of Lcy09g015560 vs. NCBI nr
Match: RVW74542.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-21
Identity = 51/128 (39.84%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 14  KIIWRDNYPKKIKFFLWELAHKSINTNEVLQRRMPYMSLSPGWCSLCKSSDELQEHIFAI 73
           K +W    P K+K F+W +AHK +NTN++LQ R PY +LSP  C LC    E  +H+F  
Sbjct: 545 KFVWNAQVPFKVKSFVWLVAHKKVNTNDLLQLRRPYKALSPDICKLCMKHGETVDHLFLH 604

Query: 74  CPLAWNFWSRITKSFGWSMSLLDNMGDILASVMLGHPFINIKGLLWMNIARAFFWVLWKE 133
           C L    W R+ +S         ++ D+LAS   G  F     +LW N   A  WV+W+E
Sbjct: 605 CSLTIGLWHRLFQSAKMDWVSPRSISDMLASNFNGFGFSKRGIVLWQNACIALMWVVWRE 664

Query: 134 RNRRVFQG 142
           RN R+F+G
Sbjct: 665 RNARIFRG 672

[Close]

BLAST of Lcy09g015560 vs. NCBI nr
Match: RVW25634.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 112.5 bits (280), Expect = 3.5e-21
Identity = 51/142 (35.92%), Postives = 77/142 (54.23%), Query Frame = 0


Query: 14   KIIWRDNYPKKIKFFLWELAHKSINTNEVLQRRMPYMSLSPGWCSLCKSSDELQEHIFAI 73
            K +W    P K+K F+W +AHK +NTN++LQ R PY +LSP  C LC    E  +H+F  
Sbjct: 938  KFVWNAQVPFKVKSFVWLVAHKKVNTNDLLQLRRPYKALSPDICKLCMKHGETVDHLFLH 997

Query: 74   CPLAWNFWSRITKSFGWSMSLLDNMGDILASVMLGHPFINIKGLLWMNIARAFFWVLWKE 133
            C L    W R+ +S         ++ D+LAS   G  F     +LW N   A  WV+W+E
Sbjct: 998  CSLTIGLWHRLFQSAKMDWVSPRSISDMLASNFNGFGFSKRGIVLWQNACIALMWVVWRE 1057

Query: 134  RNRRVFQGIDPSFDAFFDIVIY 156
            RN R+F+    + +  +D +++
Sbjct: 1058 RNARIFEDKARNSEYLWDSIVF 1079

[Close]

BLAST of Lcy09g015560 vs. NCBI nr
Match: CAN80039.1 (hypothetical protein VITISV_040551 [Vitis vinifera])

HSP 1 Score: 112.1 bits (279), Expect = 4.5e-21
Identity = 50/127 (39.37%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 14  KIIWRDNYPKKIKFFLWELAHKSINTNEVLQRRMPYMSLSPGWCSLCKSSDELQEHIFAI 73
           K +W    P K+K F+W +AHK +NTN++LQ R PY +LSP  C LC    E  +H+F  
Sbjct: 401 KFVWNAQVPFKVKSFVWLVAHKKVNTNDLLQLRRPYKTLSPDICKLCMKHGETVDHLFLH 460

Query: 74  CPLAWNFWSRITKSFGWSMSLLDNMGDILASVMLGHPFINIKGLLWMNIARAFFWVLWKE 133
           C L    W R+ +S       L ++ D+L+S   G  F     +LW N   A  WV+W+E
Sbjct: 461 CSLTIGLWHRLFQSAKMDWVSLRSISDMLSSNFNGFGFSKRGIVLWQNACIAIMWVVWRE 520

Query: 134 RNRRVFQ 141
           RN R+F+
Sbjct: 521 RNARIFE 527

[Close]

BLAST of Lcy09g015560 vs. NCBI nr
Match: XP_030505044.1 (uncharacterized protein LOC115720016 [Cannabis sativa])

HSP 1 Score: 111.7 bits (278), Expect = 5.9e-21
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 0


Query: 10  PYLAKIIWRDNYPKKIKFFLWELAHKSINTNEVLQRRMPYMSLSPGWCSLCKSSDELQEH 69
           P   K +W+     ++K F+W +AH  +N ++VLQRR P++ +SPGWC  CKSS E  EH
Sbjct: 125 PPWTKSLWKSTAMSRVKIFIWLVAHGKVNVHDVLQRRRPFILISPGWCVSCKSSGEEVEH 184

Query: 70  IFAICPLAWNFWSRITKSFGWSMSLLDNMGDILASVMLGHPFINIKGLLWMNIARAFFWV 129
           +F  C  +   WS + + FG   +L  ++  +L S + G      + +LW     A  W 
Sbjct: 185 LFLHCKFSSKLWSMLLEEFGLIWALPRSVPQMLVSKIKGS---KRQDILWKTAVLATIWA 244

Query: 130 LWKERNRRVFQGIDPSFDA 149
           +W ERN R+F+ ++ S  +
Sbjct: 245 IWLERNTRIFEDVENSLQS 260

The following BLAST results are available for this feature:

BLAST of Lcy09g015560 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g015560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5AIV6	5.7e-22	34.48	zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_028992 PE=...	[more]
A0A438GQT9	1.3e-21	39.84	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_923 P...	[more]
A0A438CR03	1.7e-21	35.92	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_568 P...	[more]
A5AG22	2.2e-21	39.37	zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_040551 PE=...	[more]
A0A438EGK9	2.9e-21	32.28	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]

BLAST of Lcy09g015560 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN73452.1	1.2e-21	34.48	hypothetical protein VITISV_028992 [Vitis vinifera]	[more]
RVW74542.1	2.6e-21	39.84	putative ribonuclease H protein [Vitis vinifera]	[more]
RVW25634.1	3.5e-21	35.92	putative ribonuclease H protein [Vitis vinifera]	[more]
CAN80039.1	4.5e-21	39.37	hypothetical protein VITISV_040551 [Vitis vinifera]	[more]
XP_030505044.1	5.9e-21	34.53	uncharacterized protein LOC115720016 [Cannabis sativa]	[more]

BLAST of Lcy09g015560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 11..81 e-value: 1.5E-14 score: 54.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g015560.1	Lcy09g015560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity