Lcy09g014580 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g014580
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	CLAVATA3/ESR (CLE)-related protein 27
Location	Chr09: 17667872 .. 17668965 (-)
RNA-Seq Expression	Lcy09g014580
Synteny	Lcy09g014580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCAACACCATCCATAATTTATAAATTACCACCAAAACCAAAAACCCATTATAAATTGCCTTGCTTTCGATTTCTTCTTCCCCCCTTTTCATGGTGGTTTTTCAGGCAATGTGCGGCGGCGCCACTCCCACACGGCGGCGGCGATTTCTCTCTTCTTTCTTGATCATGGCTTTCTTCATCTGGGTCGTCTTCTGCCACCACCGCCACGAAGCGGCCGCCGCGGCCAGACCGTTCCGGGAAAATGAAAATCCAGAGGGAACCCATGTCGGCGGCGGCGGAAGCAGGGAGAAGCTCGTCCGGAAGTATTTCAATGGAAGGAGTTTCGGGTCGAGAGGGTTTCAAGAGAGCAAACGAACAGTGCCGAGCTGCCCCGATCCCCTCCACAACTAGTAACGATAATTTTTATTTTTTTTTAATTTTTTGTTCTTGTTGAATATTATTTCTGTTGTCAGCCGAAAATACCCATGGTTTTTTTTTTGAAAAAGCGGGGGTATTTGGGTAGTTTGAAGTTAGAGTGGTGTATAGGTGAAAAGAAAATGGGGATTCAGAAATGGAGGGTTCGTGATGTGTACAGAAAAGTAGAAAATCTGAAATACCACTTTTGGAGAAGTTTGGCAGAGGAGAAAGAAGACGAAGAAAGAAGGAAGAAGAGGAAGAATGGCAGAGATGTGATTTGCAAACAGAGAATCGTGTCTTTTTTTTTTTTATTTGAAAATTAATATTAAAAGAGAGAGAGAGAGTACGTATTTTTCTTTTTTATTTTTAGGGGGTTTATAATTGATGTACATTTATTTGTACGAGTAATTTTGTTTGTCCTCTGCTCTGCCAAGGGAAAAGAAAAGAGAAGCTTTTTGGGCTCATCAGTGGTGTGAAGAAATTTGCTTTTGGTGTTTCCCAGCTATAATCTCTCTTCTCTTTTTACTTTTACTGGGCTTATTCTGTGTTTCAATAATTTTGGGACAACTTTCTCACATTTTACACTTGCTATTTCTTTTAATTGTTTGTTTAGATTATTTCTTACGGAATTTATTGAACTTTGATTTTTGGTTTGGTTGGGGAGTTGAGTTGGGATGATTACATTGCTAGGAAATGC

mRNA sequence

TTCCAACACCATCCATAATTTATAAATTACCACCAAAACCAAAAACCCATTATAAATTGCCTTGCTTTCGATTTCTTCTTCCCCCCTTTTCATGGTGGTTTTTCAGGCAATGTGCGGCGGCGCCACTCCCACACGGCGGCGGCGATTTCTCTCTTCTTTCTTGATCATGGCTTTCTTCATCTGGGTCGTCTTCTGCCACCACCGCCACGAAGCGGCCGCCGCGGCCAGACCGTTCCGGGAAAATGAAAATCCAGAGGGAACCCATGTCGGCGGCGGCGGAAGCAGGGAGAAGCTCGTCCGGAAGTATTTCAATGGAAGGAGTTTCGGGTCGAGAGGGTTTCAAGAGAGCAAACGAACAGTGCCGAGCTGCCCCGATCCCCTCCACAACTAGTAACGATAATTTTTATTTTTTTTTAATTTTTTGTTCTTGTTGAATATTATTTCTGTTGTCAGCCGAAAATACCCATGGTTTTTTTTTTGAAAAAGCGGGGGTATTTGGGTAGTTTGAAGTTAGAGTGGTGTATAGGTGAAAAGAAAATGGGGATTCAGAAATGGAGGGTTCGTGATGTGTACAGAAAAGTAGAAAATCTGAAATACCACTTTTGGAGAAGTTTGGCAGAGGAGAAAGAAGACGAAGAAAGAAGGAAGAAGAGGAAGAATGGCAGAGATGTGATTTGCAAACAGAGAATCGTGTCTTTTTTTTTTTTATTTGAAAATTAATATTAAAAGAGAGAGAGAGAGTACGTATTTTTCTTTTTTATTTTTAGGGGGTTTATAATTGATGTACATTTATTTGTACGAGTAATTTTGTTTGTCCTCTGCTCTGCCAAGGGAAAAGAAAAGAGAAGCTTTTTGGGCTCATCAGTGGTGTGAAGAAATTTGCTTTTGGTGTTTCCCAGCTATAATCTCTCTTCTCTTTTTACTTTTACTGGGCTTATTCTGTGTTTCAATAATTTTGGGACAACTTTCTCACATTTTACACTTGCTATTTCTTTTAATTGTTTGTTTAGATTATTTCTTACGGAATTTATTGAACTTTGATTTTTGGTTTGGTTGGGGAGTTGAGTTGGGATGATTACATTGCTAGGAAATGC

Coding sequence (CDS)

ATGGTGGTTTTTCAGGCAATGTGCGGCGGCGCCACTCCCACACGGCGGCGGCGATTTCTCTCTTCTTTCTTGATCATGGCTTTCTTCATCTGGGTCGTCTTCTGCCACCACCGCCACGAAGCGGCCGCCGCGGCCAGACCGTTCCGGGAAAATGAAAATCCAGAGGGAACCCATGTCGGCGGCGGCGGAAGCAGGGAGAAGCTCGTCCGGAAGTATTTCAATGGAAGGAGTTTCGGGTCGAGAGGGTTTCAAGAGAGCAAACGAACAGTGCCGAGCTGCCCCGATCCCCTCCACAACTAG

Protein sequence

MVVFQAMCGGATPTRRRRFLSSFLIMAFFIWVVFCHHRHEAAAAARPFRENENPEGTHVGGGGSREKLVRKYFNGRSFGSRGFQESKRTVPSCPDPLHN

Homology

[Close]

BLAST of Lcy09g014580 vs. ExPASy Swiss-Prot
Match: Q9LUA1 (CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.2e-04
Identity = 31/82 (37.80%), Postives = 40/82 (48.78%), Query Frame = 0


Query: 24  LIMAFFIWVVFCHHRHEAAAAARPFRENENPEGTHVGGGGSREKLVRKYFNG------RS 83
           +I+  ++  +FC   +    A R F E      T   G    E L++KYF         S
Sbjct: 18  VILLSYMLHLFC--VYSRVGAIRIFPE------TPASGKRQEEDLMKKYFGAGKFPPVDS 77

Query: 84  FGSRGFQESKRTVPSCPDPLHN 100
           F  +G  ESKR VPSCPDPLHN
Sbjct: 78  FVGKGISESKRIVPSCPDPLHN 91

[Close]

BLAST of Lcy09g014580 vs. ExPASy TrEMBL
Match: A0A5A7VDX3 (Putative Clavata3/esr-related 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00690 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.7e-19
Identity = 56/90 (62.22%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 10  GATPTRRRRFLSSFLIMAFFIWVVFCHHRHEAAAAARPFRENENPEGTHVGGGGSREKLV 69
           GATP+RRRR LS F I+ FFIWVV       A+A ARP  E+ENP+   +G  GS+E   
Sbjct: 5   GATPSRRRRLLSYFFIILFFIWVVV--GNQAASAMARPLEESENPD---MGAVGSKE--- 64

Query: 70  RKYFNGRSFGSRGFQESKRTVPSCPDPLHN 100
            KYFNGRS GSR F+E+KRTVPSCPDPLHN
Sbjct: 65  -KYFNGRSLGSREFEENKRTVPSCPDPLHN 85

[Close]

BLAST of Lcy09g014580 vs. ExPASy TrEMBL
Match: A0A6A1W705 (CLAVATA3/ESR (CLE)-related protein 43 OS=Morella rubra OX=262757 GN=CJ030_MR3G018956 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 40/85 (47.06%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 24  LIMAFFIWVVFCHHRHEAAAAARPFRENENPEGTHVGGGGS-----REKLVRKYFNGRSF 83
           +I    IWV  C      A A R    N   + T  G  GS     +E+L+RKYFNGR+F
Sbjct: 10  IIPVLQIWV--CCEYSCQAGAIRIHPGNGEAKVTKEGSRGSLDKKNKEELLRKYFNGRTF 69

Query: 84  G----SRGFQESKRTVPSCPDPLHN 100
           G    + GF+ESKR VPSCPDPLHN
Sbjct: 70  GFNRTANGFEESKRRVPSCPDPLHN 92

[Close]

BLAST of Lcy09g014580 vs. ExPASy TrEMBL
Match: A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.8e-05
Identity = 36/95 (37.89%), Postives = 49/95 (51.58%), Query Frame = 0


Query: 21  SSFLIMAFFIWV----VFCHHRHEAAAAARPFRENENPEGTHVGG--------GGSREKL 80
           S+F I+   +WV    V CH +   A A+R F     P   H             ++  L
Sbjct: 16  SAFAILILILWVSQIWVCCHCQ---ARASRIFPPPPPPPPPHPADKSLSGEEKDNAKNDL 75

Query: 81  VRKYFNGRSFG----SRGFQESKRTVPSCPDPLHN 100
           ++KYFNGR+F       GF++SKR +PSCPDPLHN
Sbjct: 76  LQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Lcy09g014580 vs. ExPASy TrEMBL
Match: A0A438EC69 (CLAVATA3/ESR (CLE)-related protein 27 OS=Vitis vinifera OX=29760 GN=CLE27_1 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 64  SREKLVRKYFNGRSFG----SRGFQESKRTVPSCPDPLHN 100
           S E L RK+FNGR+F     ++GF ESKR VPSCPDPLHN
Sbjct: 49  SNEDLFRKFFNGRAFAFNRTAKGFDESKRRVPSCPDPLHN 88

[Close]

BLAST of Lcy09g014580 vs. ExPASy TrEMBL
Match: A0A5N6Q3Y4 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_01912 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 34/85 (40.00%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 15  RRRRFLSSFLIMAFFIWVVFCHHRHEAAAAARPFRENENPEGTHVGGGGSREKLVRKYFN 74
           RR+ +L + LIM   + +      H +  +A P      P          R +L RK+FN
Sbjct: 7   RRKVYLVALLIMLSVLQIWVLSSDHCSIRSATPPPPPSPPPPPQDSDAVKRLELHRKFFN 66

Query: 75  GRSFGSRGFQESKRTVPSCPDPLHN 100
           GR F  + FQE+KR VPSCPDPLHN
Sbjct: 67  GR-FPDKSFQENKRIVPSCPDPLHN 90

[Close]

BLAST of Lcy09g014580 vs. NCBI nr
Match: KAG6579278.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156.0 bits (393), Expect = 1.7e-34
Identity = 74/101 (73.27%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 1   MVVFQAMCGGAT--PTRRRRFLSSFLIMAFFIWVVFCHHRHEAAAAARPFRENENPEGTH 60
           MVVF AM GG    P RRRRFLSSF ++ FFIWVVFCHHRH+A A ARPF  N+ PE + 
Sbjct: 1   MVVFPAMSGGGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSV 60

Query: 61  VGGGGSREKLVRKYFNGRSFGSRGFQESKRTVPSCPDPLHN 100
            GG GS+EKL+R YFNGRSFGSRGFQE KRTVPSCPDPLHN
Sbjct: 61  SGGAGSKEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 101

[Close]

BLAST of Lcy09g014580 vs. NCBI nr
Match: KAG7016789.1 (hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 70/92 (76.09%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 9   GGAT-PTRRRRFLSSFLIMAFFIWVVFCHHRHEAAAAARPFRENENPEGTHVGGGGSREK 68
           GGAT P RRRRFLSSF ++ FFIWVVFCHHRH+A A ARPF  N+ PE +  GG GS+EK
Sbjct: 4   GGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEK 63

Query: 69  LVRKYFNGRSFGSRGFQESKRTVPSCPDPLHN 100
           L+R YFNGRSFGSRGFQE KRTVPSCPDPLHN
Sbjct: 64  LLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 95

[Close]

BLAST of Lcy09g014580 vs. NCBI nr
Match: KAG6601785.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032500.1 CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.7e-26
Identity = 65/94 (69.15%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 7   MCGGATPTRRRRFLSSFLIMAFFIWVVFCHHRHEAAAAARPFRENENPEGTHV-GGGGSR 66
           MCGG TPTR+RRFLS+ L+MA FIWVVFCH     A +AR F EN  PE THV GGGGS+
Sbjct: 1   MCGGVTPTRQRRFLSTLLVMALFIWVVFCH--QPGAVSARLFPENLIPEETHVGGGGGSK 60

Query: 67  EKLVRKYFNGRSFGSRGFQESKRTVPSCPDPLHN 100
           EKL+RKYFN    G RGF+++KRTVPSCPDPLHN
Sbjct: 61  EKLLRKYFN----GMRGFEDNKRTVPSCPDPLHN 88

[Close]

BLAST of Lcy09g014580 vs. NCBI nr
Match: KAA0063931.1 (putative Clavata3/esr-related 43 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 7.6e-19
Identity = 56/90 (62.22%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 10  GATPTRRRRFLSSFLIMAFFIWVVFCHHRHEAAAAARPFRENENPEGTHVGGGGSREKLV 69
           GATP+RRRR LS F I+ FFIWVV       A+A ARP  E+ENP+   +G  GS+E   
Sbjct: 5   GATPSRRRRLLSYFFIILFFIWVVV--GNQAASAMARPLEESENPD---MGAVGSKE--- 64

Query: 70  RKYFNGRSFGSRGFQESKRTVPSCPDPLHN 100
            KYFNGRS GSR F+E+KRTVPSCPDPLHN
Sbjct: 65  -KYFNGRSLGSREFEENKRTVPSCPDPLHN 85

[Close]

BLAST of Lcy09g014580 vs. NCBI nr
Match: KAB1221059.1 (CLAVATA3/ESR (CLE)-related protein 43 [Morella rubra])

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-06
Identity = 40/85 (47.06%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 24  LIMAFFIWVVFCHHRHEAAAAARPFRENENPEGTHVGGGGS-----REKLVRKYFNGRSF 83
           +I    IWV  C      A A R    N   + T  G  GS     +E+L+RKYFNGR+F
Sbjct: 10  IIPVLQIWV--CCEYSCQAGAIRIHPGNGEAKVTKEGSRGSLDKKNKEELLRKYFNGRTF 69

Query: 84  G----SRGFQESKRTVPSCPDPLHN 100
           G    + GF+ESKR VPSCPDPLHN
Sbjct: 70  GFNRTANGFEESKRRVPSCPDPLHN 92

[Close]

BLAST of Lcy09g014580 vs. TAIR 10
Match: AT3G25905.1 (CLAVATA3/ESR-RELATED 27 )

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-05
Identity = 31/82 (37.80%), Postives = 40/82 (48.78%), Query Frame = 0


Query: 24  LIMAFFIWVVFCHHRHEAAAAARPFRENENPEGTHVGGGGSREKLVRKYFNG------RS 83
           +I+  ++  +FC   +    A R F E      T   G    E L++KYF         S
Sbjct: 18  VILLSYMLHLFC--VYSRVGAIRIFPE------TPASGKRQEEDLMKKYFGAGKFPPVDS 77

Query: 84  FGSRGFQESKRTVPSCPDPLHN 100
           F  +G  ESKR VPSCPDPLHN
Sbjct: 78  FVGKGISESKRIVPSCPDPLHN 91

[Close]

BLAST of Lcy09g014580 vs. TAIR 10
Match: AT1G25425.1 (CLAVATA3/ESR-RELATED 43 )

HSP 1 Score: 40.8 bits (94), Expect = 7.4e-04
Identity = 18/38 (47.37%), Postives = 26/38 (68.42%), Query Frame = 0


Query: 66  EKLVRKYFNGRSFG----SRGFQESKRTVPSCPDPLHN 100
           ++L ++YF GRSFG    +  F++S R +PS PD LHN
Sbjct: 59  QRLFQRYFKGRSFGLNNTNSRFEDSNRRIPSSPDRLHN 96

The following BLAST results are available for this feature:

BLAST of Lcy09g014580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUA1	3.2e-04	37.80	CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 P...	[more]

BLAST of Lcy09g014580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDX3	3.7e-19	62.22	Putative Clavata3/esr-related 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A6A1W705	1.2e-06	47.06	CLAVATA3/ESR (CLE)-related protein 43 OS=Morella rubra OX=262757 GN=CJ030_MR3G01...	[more]
A0A0A0KR66	6.8e-05	37.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1	[more]
A0A438EC69	8.8e-05	65.00	CLAVATA3/ESR (CLE)-related protein 27 OS=Vitis vinifera OX=29760 GN=CLE27_1 PE=4...	[more]
A0A5N6Q3Y4	8.8e-05	40.00	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_01912 PE=4 SV=1	[more]

BLAST of Lcy09g014580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579278.1	1.7e-34	73.27	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7016789.1	1.2e-32	76.09	hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601785.1	1.7e-26	69.15	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]
KAA0063931.1	7.6e-19	62.22	putative Clavata3/esr-related 43 [Cucumis melo var. makuwa]	[more]
KAB1221059.1	2.6e-06	47.06	CLAVATA3/ESR (CLE)-related protein 43 [Morella rubra]	[more]

BLAST of Lcy09g014580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25905.1	2.3e-05	37.80	CLAVATA3/ESR-RELATED 27	[more]
AT1G25425.1	7.4e-04	47.37	CLAVATA3/ESR-RELATED 43	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..99
None	No IPR available	PANTHER	PTHR37184:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 14..99
IPR040274	CLAVATA3/ESR (CLE)-related protein 27/43	PANTHER	PTHR37184	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 14..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g014580.1	Lcy09g014580.1	mRNA