Lcy09g014390 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g014390
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	SWIM-type domain-containing protein
Location	Chr09: 16667628 .. 16668023 (+)
RNA-Seq Expression	Lcy09g014390
Synteny	Lcy09g014390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTTCAAATCAAAAACTGATTTAAAGAATGTTGTGAAGAGCTATTCTATTCTTTGTTATCAACACTTCGACGTAGTGGAGTCAAATAAGAAAGTATGGGTCGTTAAGTGTAAACGATTTGGACAGGGTTGTACGTGGCGACTTCGGGCTCGTTGTCTTAAACGACATGGAAGATTTGAGATAACTCAGTACAATGGCCCTCACTCATGCATGTATGCAAGGTTGAGTCAAGATCACAGTCAATTAGACTCTAACCTAATTGCAGTCGAGGTGCACAACGTTGTTCAGTGCAATCCATCCGTAGATATTAAAACACTTCAGGAAATTGTATTGAAAAAGTATGGCTATTCTGTTACGTATTCAAAAGTATGGGATGGGAAAAAAAGGCCATAA

mRNA sequence

ATGATCTTCAAATCAAAAACTGATTTAAAGAATGTTGTGAAGAGCTATTCTATTCTTTGTTATCAACACTTCGACGTAGTGGAGTCAAATAAGAAAGTATGGGTCGTTAAGTGTAAACGATTTGGACAGGGTTGTACGTGGCGACTTCGGGCTCGTTGTCTTAAACGACATGGAAGATTTGAGATAACTCAGTACAATGGCCCTCACTCATGCATGTATGCAAGGTTGAGTCAAGATCACAGTCAATTAGACTCTAACCTAATTGCAGTCGAGGTGCACAACGTTGTTCAGTGCAATCCATCCGTAGATATTAAAACACTTCAGGAAATTGTATTGAAAAAGTATGGCTATTCTGTTACGTATTCAAAAGTATGGGATGGGAAAAAAAGGCCATAA

Coding sequence (CDS)

ATGATCTTCAAATCAAAAACTGATTTAAAGAATGTTGTGAAGAGCTATTCTATTCTTTGTTATCAACACTTCGACGTAGTGGAGTCAAATAAGAAAGTATGGGTCGTTAAGTGTAAACGATTTGGACAGGGTTGTACGTGGCGACTTCGGGCTCGTTGTCTTAAACGACATGGAAGATTTGAGATAACTCAGTACAATGGCCCTCACTCATGCATGTATGCAAGGTTGAGTCAAGATCACAGTCAATTAGACTCTAACCTAATTGCAGTCGAGGTGCACAACGTTGTTCAGTGCAATCCATCCGTAGATATTAAAACACTTCAGGAAATTGTATTGAAAAAGTATGGCTATTCTGTTACGTATTCAAAAGTATGGGATGGGAAAAAAAGGCCATAA

Protein sequence

MIFKSKTDLKNVVKSYSILCYQHFDVVESNKKVWVVKCKRFGQGCTWRLRARCLKRHGRFEITQYNGPHSCMYARLSQDHSQLDSNLIAVEVHNVVQCNPSVDIKTLQEIVLKKYGYSVTYSKVWDGKKRP

Homology

[Close]

BLAST of Lcy09g014390 vs. ExPASy TrEMBL
Match: A0A438KDW5 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_008540 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.7e-33
Identity = 69/128 (53.91%), Postives = 92/128 (71.88%), Query Frame = 0


Query: 3   FKSKTDLKNVVKSYSILCYQHFDVVESNKKVWVVKCKRFGQGCTWRLRARCLKRHGRFEI 62
           F+SK DL+  VK YSI   QH  V+ES   +W VKCK++ +GC WRLRA   K HG FEI
Sbjct: 205 FESKVDLQYAVKRYSICRNQHLIVIESKPDIWAVKCKKWSEGCNWRLRACRRKCHGLFEI 264

Query: 63  TQYNGPHSCMYARLSQDHSQLDSNLIAVEVHNVVQCNPSVDIKTLQEIVLKKYGYSVTYS 122
           T+Y GPH+C+Y++LSQDHSQLDS  IA EV NVVQ + ++ I  L +IV  K+GY+V Y 
Sbjct: 265 TKYIGPHTCVYSKLSQDHSQLDSTFIAREVQNVVQSDHTISIAALHQIVKDKFGYNVHYK 324

Query: 123 KVWDGKKR 131
           ++W+ K++
Sbjct: 325 RIWEAKRK 332

[Close]

BLAST of Lcy09g014390 vs. ExPASy TrEMBL
Match: A0A438I9A4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_022418 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.6e-33
Identity = 70/128 (54.69%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 3   FKSKTDLKNVVKSYSILCYQHFDVVESNKKVWVVKCKRFGQGCTWRLRARCLKRHGRFEI 62
           F+SK DL+  VK YSI   QH  V+ES    WVVKCK++ +GC WRLRA   K HG FEI
Sbjct: 229 FESKVDLQYAVKRYSICRNQHLIVIESEPDFWVVKCKKWSEGCNWRLRACRRKCHGLFEI 288

Query: 63  TQYNGPHSCMYARLSQDHSQLDSNLIAVEVHNVVQCNPSVDIKTLQEIVLKKYGYSVTYS 122
           T+Y GPH+C+Y +LSQDHSQLDS  IA EV NVVQ + ++ I  L +IV  K+GY+V Y 
Sbjct: 289 TKYIGPHTCVYPKLSQDHSQLDSTFIAREVQNVVQSDHTISIAALHQIVKDKFGYNVHYK 348

Query: 123 KVWDGKKR 131
           ++W+ K++
Sbjct: 349 RIWEAKRK 356

[Close]

BLAST of Lcy09g014390 vs. ExPASy TrEMBL
Match: A0A438EWG2 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_068088 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.6e-33
Identity = 69/128 (53.91%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 3   FKSKTDLKNVVKSYSILCYQHFDVVESNKKVWVVKCKRFGQGCTWRLRARCLKRHGRFEI 62
           F+SK DL+  VK YSI   QH  V+ES   +W VKCK++ +GC WRLRA   K HG FEI
Sbjct: 205 FESKVDLQYAVKRYSICRNQHLIVIESEPDIWAVKCKKWSEGCNWRLRACRRKCHGLFEI 264

Query: 63  TQYNGPHSCMYARLSQDHSQLDSNLIAVEVHNVVQCNPSVDIKTLQEIVLKKYGYSVTYS 122
           T+Y GPH+C+Y +LSQDHSQLDS  IA EV NVVQ + ++ I  L +IV  K+GY+V Y 
Sbjct: 265 TKYIGPHTCVYPKLSQDHSQLDSTFIAREVQNVVQSDHTISIAALHQIVKDKFGYNVHYK 324

Query: 123 KVWDGKKR 131
           ++W+ K++
Sbjct: 325 RIWEAKRK 332

[Close]

BLAST of Lcy09g014390 vs. ExPASy TrEMBL
Match: A0A438IN75 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_029046 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.7e-32
Identity = 68/128 (53.12%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 3   FKSKTDLKNVVKSYSILCYQHFDVVESNKKVWVVKCKRFGQGCTWRLRARCLKRHGRFEI 62
           F+SK DL+  VK YSI   QH  V+ES   +WVVKCK++ + C WRLRA   K HG FEI
Sbjct: 205 FESKVDLQYAVKRYSICRNQHLIVIESEPDIWVVKCKKWSESCNWRLRACRRKCHGLFEI 264

Query: 63  TQYNGPHSCMYARLSQDHSQLDSNLIAVEVHNVVQCNPSVDIKTLQEIVLKKYGYSVTYS 122
           T+Y GPH+C+Y +LSQDHSQLDS  I+ EV NVVQ + ++ I  L +IV  K+GY+V Y 
Sbjct: 265 TKYIGPHTCVYPKLSQDHSQLDSTFISREVQNVVQSDHTISIAALHQIVKDKFGYNVHYK 324

Query: 123 KVWDGKKR 131
           ++W+ K++
Sbjct: 325 RIWEAKRK 332

[Close]

BLAST of Lcy09g014390 vs. ExPASy TrEMBL
Match: A0A438DWJ5 (Serine/threonine-protein phosphatase 7 long form-like OS=Vitis vinifera OX=29760 GN=MAIL3_107 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.7e-32
Identity = 68/128 (53.12%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 3   FKSKTDLKNVVKSYSILCYQHFDVVESNKKVWVVKCKRFGQGCTWRLRARCLKRHGRFEI 62
           F+SK DL+  VK Y+I   QH  V ES  ++W V+CK++ +GC WRLRA   K HG FEI
Sbjct: 202 FESKEDLQYAVKRYAICRNQHLMVCESEPQLWAVRCKKWQEGCNWRLRACHRKSHGMFEI 261

Query: 63  TQYNGPHSCMYARLSQDHSQLDSNLIAVEVHNVVQCNPSVDIKTLQEIVLKKYGYSVTYS 122
           T+Y GPH+C+Y +LSQDHSQLDS LIA E+ NVVQ + +  I TL +IV  K+GY V Y 
Sbjct: 262 TKYAGPHTCVYPKLSQDHSQLDSTLIATEIQNVVQRDHTTSIATLHQIVKDKFGYDVHYR 321

Query: 123 KVWDGKKR 131
           ++W+ K++
Sbjct: 322 RIWEAKRK 329

[Close]

BLAST of Lcy09g014390 vs. NCBI nr
Match: RVX19406.1 (hypothetical protein CK203_008540 [Vitis vinifera])

HSP 1 Score: 151.4 bits (381), Expect = 5.5e-33
Identity = 69/128 (53.91%), Postives = 92/128 (71.88%), Query Frame = 0


Query: 3   FKSKTDLKNVVKSYSILCYQHFDVVESNKKVWVVKCKRFGQGCTWRLRARCLKRHGRFEI 62
           F+SK DL+  VK YSI   QH  V+ES   +W VKCK++ +GC WRLRA   K HG FEI
Sbjct: 205 FESKVDLQYAVKRYSICRNQHLIVIESKPDIWAVKCKKWSEGCNWRLRACRRKCHGLFEI 264

Query: 63  TQYNGPHSCMYARLSQDHSQLDSNLIAVEVHNVVQCNPSVDIKTLQEIVLKKYGYSVTYS 122
           T+Y GPH+C+Y++LSQDHSQLDS  IA EV NVVQ + ++ I  L +IV  K+GY+V Y 
Sbjct: 265 TKYIGPHTCVYSKLSQDHSQLDSTFIAREVQNVVQSDHTISIAALHQIVKDKFGYNVHYK 324

Query: 123 KVWDGKKR 131
           ++W+ K++
Sbjct: 325 RIWEAKRK 332

[Close]

BLAST of Lcy09g014390 vs. NCBI nr
Match: XP_010647557.1 (PREDICTED: uncharacterized protein LOC104878656, partial [Vitis vinifera])

HSP 1 Score: 150.6 bits (379), Expect = 9.4e-33
Identity = 69/128 (53.91%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 3   FKSKTDLKNVVKSYSILCYQHFDVVESNKKVWVVKCKRFGQGCTWRLRARCLKRHGRFEI 62
           F+SK DL+  VK YSI   QH  V+ES   +W VKCK++ +GC WRLRA   K HG FEI
Sbjct: 205 FESKVDLQYAVKRYSICRNQHLIVIESEPDIWAVKCKKWSEGCNWRLRACRRKCHGLFEI 264

Query: 63  TQYNGPHSCMYARLSQDHSQLDSNLIAVEVHNVVQCNPSVDIKTLQEIVLKKYGYSVTYS 122
           T+Y GPH+C+Y +LSQDHSQLDS  IA EV NVVQ + ++ I  L +IV  K+GY+V Y 
Sbjct: 265 TKYIGPHTCVYPKLSQDHSQLDSTFIAREVQNVVQSDHTISIAALHQIVKDKFGYNVHYK 324

Query: 123 KVWDGKKR 131
           ++W+ K++
Sbjct: 325 RIWEAKRK 332

[Close]

BLAST of Lcy09g014390 vs. NCBI nr
Match: RVW52006.1 (hypothetical protein CK203_068088 [Vitis vinifera])

HSP 1 Score: 150.6 bits (379), Expect = 9.4e-33
Identity = 69/128 (53.91%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 3   FKSKTDLKNVVKSYSILCYQHFDVVESNKKVWVVKCKRFGQGCTWRLRARCLKRHGRFEI 62
           F+SK DL+  VK YSI   QH  V+ES   +W VKCK++ +GC WRLRA   K HG FEI
Sbjct: 205 FESKVDLQYAVKRYSICRNQHLIVIESEPDIWAVKCKKWSEGCNWRLRACRRKCHGLFEI 264

Query: 63  TQYNGPHSCMYARLSQDHSQLDSNLIAVEVHNVVQCNPSVDIKTLQEIVLKKYGYSVTYS 122
           T+Y GPH+C+Y +LSQDHSQLDS  IA EV NVVQ + ++ I  L +IV  K+GY+V Y 
Sbjct: 265 TKYIGPHTCVYPKLSQDHSQLDSTFIAREVQNVVQSDHTISIAALHQIVKDKFGYNVHYK 324

Query: 123 KVWDGKKR 131
           ++W+ K++
Sbjct: 325 RIWEAKRK 332

[Close]

BLAST of Lcy09g014390 vs. NCBI nr
Match: RVW93239.1 (hypothetical protein CK203_022418 [Vitis vinifera])

HSP 1 Score: 150.6 bits (379), Expect = 9.4e-33
Identity = 70/128 (54.69%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 3   FKSKTDLKNVVKSYSILCYQHFDVVESNKKVWVVKCKRFGQGCTWRLRARCLKRHGRFEI 62
           F+SK DL+  VK YSI   QH  V+ES    WVVKCK++ +GC WRLRA   K HG FEI
Sbjct: 229 FESKVDLQYAVKRYSICRNQHLIVIESEPDFWVVKCKKWSEGCNWRLRACRRKCHGLFEI 288

Query: 63  TQYNGPHSCMYARLSQDHSQLDSNLIAVEVHNVVQCNPSVDIKTLQEIVLKKYGYSVTYS 122
           T+Y GPH+C+Y +LSQDHSQLDS  IA EV NVVQ + ++ I  L +IV  K+GY+V Y 
Sbjct: 289 TKYIGPHTCVYPKLSQDHSQLDSTFIAREVQNVVQSDHTISIAALHQIVKDKFGYNVHYK 348

Query: 123 KVWDGKKR 131
           ++W+ K++
Sbjct: 349 RIWEAKRK 356

[Close]

BLAST of Lcy09g014390 vs. NCBI nr
Match: RVW98075.1 (hypothetical protein CK203_029046 [Vitis vinifera])

HSP 1 Score: 148.7 bits (374), Expect = 3.6e-32
Identity = 68/128 (53.12%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 3   FKSKTDLKNVVKSYSILCYQHFDVVESNKKVWVVKCKRFGQGCTWRLRARCLKRHGRFEI 62
           F+SK DL+  VK YSI   QH  V+ES   +WVVKCK++ + C WRLRA   K HG FEI
Sbjct: 205 FESKVDLQYAVKRYSICRNQHLIVIESEPDIWVVKCKKWSESCNWRLRACRRKCHGLFEI 264

Query: 63  TQYNGPHSCMYARLSQDHSQLDSNLIAVEVHNVVQCNPSVDIKTLQEIVLKKYGYSVTYS 122
           T+Y GPH+C+Y +LSQDHSQLDS  I+ EV NVVQ + ++ I  L +IV  K+GY+V Y 
Sbjct: 265 TKYIGPHTCVYPKLSQDHSQLDSTFISREVQNVVQSDHTISIAALHQIVKDKFGYNVHYK 324

Query: 123 KVWDGKKR 131
           ++W+ K++
Sbjct: 325 RIWEAKRK 332

[Close]

BLAST of Lcy09g014390 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-13
Identity = 42/128 (32.81%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 1   MIFKSKTDLKNVVKSYSILCYQHFDVVESNKKVWVVKCKRFGQGCTWRLRARCLKRHGRF 60
           + FK + +LK  V  + I   ++  V E+ K+++  +C R+   C W LRA  ++ HG  
Sbjct: 189 LCFKDRDELKKAVDWWCIRRRRNCIVRETEKEMYTFECVRW--KCKWSLRAARMEEHGLV 248

Query: 61  EITQYNGPHSCMYARLSQDHSQLDSNLIAVEVHNVVQCNPSVDIKTLQEIVLKKYGYSVT 120
           EIT+Y GPH+C +    +  +  +S   A E+  VV+  P++ I  L++   +K GY + 
Sbjct: 249 EITKYTGPHTCSH----EYPNDFESEFAADEIERVVRIQPTLSIAELKKWWKEKTGYELQ 308

Query: 121 YSKVWDGK 129
            SK+ DGK
Sbjct: 309 TSKMRDGK 310

[Close]

BLAST of Lcy09g014390 vs. TAIR 10
Match: AT1G49920.1 (MuDR family transposase )

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-09
Identity = 36/119 (30.25%), Postives = 61/119 (51.26%), Query Frame = 0


Query: 1   MIFKSKTDLKNVVKSYSILCYQHFDVVESNKKVWVVKCKRFGQGCTWRLRARCLKRHGRF 60
           + FK   ++K  V   SI   Q   + E+ K V+VV+C+R+   C W + A   +  G F
Sbjct: 184 LCFKDLAEMKKAVDWCSIKRRQKCLLRETEKDVYVVECERW--HCKWSICASRREEDGLF 243

Query: 61  EITQYNGPHSCMYARLSQDHSQLDSNLIAVEVHNVVQCNPSVDIKTLQEIVLKKYGYSV 120
           EIT+ +GPH C    L    +  D+  I  ++  VV+  P++    L +   KK+G+++
Sbjct: 244 EITECSGPHDCYPEHL----NDFDAECIPFQIERVVRVQPTLSTAELDKWWEKKFGFAL 296

[Close]

BLAST of Lcy09g014390 vs. TAIR 10
Match: AT1G64255.1 (MuDR family transposase )

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-08
Identity = 39/130 (30.00%), Postives = 63/130 (48.46%), Query Frame = 0


Query: 1   MIFKSKTDLKNVVKSYSILCYQHFDVVESNKKVWVVKCKRFGQGCTWRLRARCLKRHGRF 60
           + FK   +LK  V   S+   Q   V E+ K  ++ +C R+   C W L A  +K+HG  
Sbjct: 196 LCFKDGDELKKAVDWCSLKAQQKCVVRETAKDEYIFECIRW--KCKWSLGAARMKKHGLV 255

Query: 61  EITQYNGPHSCMYARLSQDHSQLDSNLIAVEVHNVVQCNPSVDIKTLQEIVLKKYGYSVT 120
           EI +Y GPH+C         S+ +++    E+   V+  P+  I  L++   KK GY + 
Sbjct: 256 EIIKYTGPHTCHPIVPEDFKSEFETD----EIERAVRYMPTQTISELKKWWKKKIGYELE 315

Query: 121 YSKVWDGKKR 131
            S V   K++
Sbjct: 316 TSDVRLAKEK 319

The following BLAST results are available for this feature:

BLAST of Lcy09g014390 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g014390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438KDW5	2.7e-33	53.91	SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_008540 P...	[more]
A0A438I9A4	4.6e-33	54.69	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_022418 PE=4 SV=1	[more]
A0A438EWG2	4.6e-33	53.91	SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_068088 P...	[more]
A0A438IN75	1.7e-32	53.13	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_029046 PE=4 SV=1	[more]
A0A438DWJ5	1.7e-32	53.13	Serine/threonine-protein phosphatase 7 long form-like OS=Vitis vinifera OX=29760...	[more]

BLAST of Lcy09g014390 vs. NCBI nr


Match Name	E-value	Identity	Description
RVX19406.1	5.5e-33	53.91	hypothetical protein CK203_008540 [Vitis vinifera]	[more]
XP_010647557.1	9.4e-33	53.91	PREDICTED: uncharacterized protein LOC104878656, partial [Vitis vinifera]	[more]
RVW52006.1	9.4e-33	53.91	hypothetical protein CK203_068088 [Vitis vinifera]	[more]
RVW93239.1	9.4e-33	54.69	hypothetical protein CK203_022418 [Vitis vinifera]	[more]
RVW98075.1	3.6e-32	53.13	hypothetical protein CK203_029046 [Vitis vinifera]	[more]

BLAST of Lcy09g014390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64260.1	1.4e-13	32.81	MuDR family transposase	[more]
AT1G49920.1	4.5e-09	30.25	MuDR family transposase	[more]
AT1G64255.1	1.3e-08	30.00	MuDR family transposase	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004332	Transposase, MuDR, plant	PFAM	PF03108	DBD_Tnp_Mut	coord: 2..62 e-value: 3.1E-12 score: 46.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g014390.1	Lcy09g014390.1	mRNA