Lcy09g012520 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g012520
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	CCHC-type domain-containing protein
Location	Chr09: 13751129 .. 13753051 (-)
RNA-Seq Expression	Lcy09g012520
Synteny	Lcy09g012520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTGGAACAACCCCCTGGACCTTTCTATTATGTCATATTCTAAAGGCCACATAGACACCACCATAAAGTCTGACAAAGGGTGGTGGAGGTTCACGGGTTTTTATGGAAATCCGGTGACGGGGCTAAGAGTGGAGTCATGGACTCTCTTGGAAAGGCTTAGCAGTATGAGCAAGTTACCTTGGGTAATAGGAGGTGACTTCAACGAAATCATGATTGACAAAGAAAAAGAGGGAGGAGCCGTGAGGAACTATAGTCAAATGAATTCTTTTTGTGAAGCTACTAACAAATGTTGTCTTGTGGATTGATAGCTCTTAGAAATAAGAGCTATTGGCTCTCTCTTAGGCCTAAAAGACTCTATTTTTGATGTATTTGAGCCTTGGTTTGTGCATGAAATTGAGCAATCTTTATTGAACATCTTTACATATCAGTAGGCCAAGCTTTGTTTGAAATTGGTGCAGACTTTCTGTTTTTCAAGCTGATTTTCTGGTATATGATCACTCAGGTTTTGCTGCAGCATGCTGGTTCCACATCAGAAGGCAGAAGGTCTGGGAAGTAAAATTCTGCACGTGCTAAATCCGTGAAAGCTTTCATTAATTGAGCTGGCAGCCATGTGAGCTGATTTGTCCCATCTCAGCCAATTGGGGAAGGTCCATGTGGATTTATGTGTCTAATCAGCCCTGAAATCAATGCAAAGAGATAGTATAAATGCTTCTTTTGCCCAAAATGAGGGGGGATCAGCAGAGAATTAAACCTAGAAGCTGCTGCTGTCATTGAGAGGAAAAAAAAGACAAGGAGGCTGCTGCTAAAGGAGGATTTCCAGCTTGGGAAAGCTGGAATCTACCTTGGAAGCTTCTTTTCTTCATCCTTTTTCTCTTATTCTTCCTTCTTCTAGTGTTTAGTTTGTATTTAAGGTTGTAATTATGAATGGTATGGTAGTTCACTGCTGTATTTTCATTATTTTCACCTTGAACATGAGCTAAATCCTCTTAGGTGAGGATTAGGGTGCTTAAACTTGAACTTGTTGTTCGTTTTAGTGTAATTTTATATATTGCAACTTAAAGTAAAGTGTTCTTCATGATTAAAGCTGGAATTTCGTTTGGCCAACCATTTTCTAGCAATGTTATTGAGTGTTTGGGAAAACAATTGATAACCGATTACTTTGCTTTACCTTAGCCTTTCTAGGTCATGAAAATGAGTGGGTATTTAGGGATAAATAACCACCTAAGGCACTAAATCAGTTGAGCTAAAAAGAAGGGGTTAAATGGGAGTTTAATCACCTAACTAGAGGAGAATTGGAAGATTCCCGTAGAAAATTCTGTGTGAGTTGTAATTATAAAGTTCTGCTATAGCAAACAGCTTGTGAGAGTAGACAGCCCCTAATCTGAACCTTGCTTTCTCTGTGTGATTTTCTGTTTTTGTTGAATTTCTCTTAAGTTCTTGTCATTTTAAGTTTGTTTATCATTTTAATCTCTTGCATTTAATTATGAAAAATATTTGGTCCTCGGTTACGTTGAATTTCATTGAAAATAGGCTTAGAAATAGTGACTTTCGTTGCATCAATCCCTGTGGAAACGATATAAAAATACTTATCACTTGCTGCTGATCGTGTGCACTTGCACGTGTGTTTGTGAGTTTTCTTGCATATTTAGAATCACTTTGCACAAGGCAACATGGATGCAGGTTACAATGGCGATCAATTCACGTGGGCAAGAAACAAAAGAGATCCCAACTCAGTCAAGGAGAGGTTAGACAGATTTTTCACTAATATAGAGATGCAAGACAGGGTGTGGCGCACCAAAGTGGATCATCTTAGTTACCACAGCTCCGATCATCGTCCAATCATAATGGATATTGTATGGGAGGAACCAAAGGAAAGCAAGGTCAAAAAAAGGAAAAAAGCAAAGTTCGAAGAGTCCTGA

mRNA sequence

ATGTTCTGGAACAACCCCCTGGACCTTTCTATTATGTCATATTCTAAAGGCCACATAGACACCACCATAAAGTCTGACAAAGGGTGGTGGAGGTTCACGGGTTTTTATGGAAATCCGGTGACGGGGCTAAGAGTGGAGTCATGGACTCTCTTGGAAAGGCTTAGCAGTTACAATGGCGATCAATTCACGTGGGCAAGAAACAAAAGAGATCCCAACTCAGTCAAGGAGAGGTTAGACAGATTTTTCACTAATATAGAGATGCAAGACAGGGTGTGGCGCACCAAAGTGGATCATCTTAGTTACCACAGCTCCGATCATCGTCCAATCATAATGGATATTGTATGGGAGGAACCAAAGGAAAGCAAGGTCAAAAAAAGGAAAAAAGCAAAGTTCGAAGAGTCCTGA

Coding sequence (CDS)

ATGTTCTGGAACAACCCCCTGGACCTTTCTATTATGTCATATTCTAAAGGCCACATAGACACCACCATAAAGTCTGACAAAGGGTGGTGGAGGTTCACGGGTTTTTATGGAAATCCGGTGACGGGGCTAAGAGTGGAGTCATGGACTCTCTTGGAAAGGCTTAGCAGTTACAATGGCGATCAATTCACGTGGGCAAGAAACAAAAGAGATCCCAACTCAGTCAAGGAGAGGTTAGACAGATTTTTCACTAATATAGAGATGCAAGACAGGGTGTGGCGCACCAAAGTGGATCATCTTAGTTACCACAGCTCCGATCATCGTCCAATCATAATGGATATTGTATGGGAGGAACCAAAGGAAAGCAAGGTCAAAAAAAGGAAAAAAGCAAAGTTCGAAGAGTCCTGA

Protein sequence

MFWNNPLDLSIMSYSKGHIDTTIKSDKGWWRFTGFYGNPVTGLRVESWTLLERLSSYNGDQFTWARNKRDPNSVKERLDRFFTNIEMQDRVWRTKVDHLSYHSSDHRPIIMDIVWEEPKESKVKKRKKAKFEES

Homology

[Close]

BLAST of Lcy09g012520 vs. ExPASy TrEMBL
Match: A0A5C7H3Y3 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_024151 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 8.5e-19
Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 0


Query: 1   MFWNNPLDLSIMSYSKGHIDTTIKSDKGW-WRFTGFYGNPVTGLRVESWTLLERLSSY-- 60
           + W   L ++++SYS GHID  IK + G+ WRF+G YGNP    RV SW LL RLS    
Sbjct: 386 VLWKKELQVTVISYSVGHIDARIKMEDGFRWRFSGVYGNPSPNKRVNSWELLGRLSEVDR 445

Query: 61  ---------------NGDQFTWARNKRDPNSVKERLDRFFTNIEMQDRVWRTKVDHLSYH 112
                          +G ++TW   +    +++ER+DRFF N   +DR     V+HL ++
Sbjct: 446 FRQAIDKCDLIELGSSGPRYTWNNKREGKFNIQERIDRFFANNLWRDRFEFVMVEHLGFN 505

[Close]

BLAST of Lcy09g012520 vs. ExPASy TrEMBL
Match: A0A5C7HRM0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_014270 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 8.0e-17
Identity = 49/133 (36.84%), Postives = 71/133 (53.38%), Query Frame = 0


Query: 1   MFWNNPLDLSIMSYSKGHIDTTIKSDKGW-WRFTGFYGNPVTGLRVESWTLLERLSSYN- 60
           + W   L +SI S+S GHID  I+ + G+ WRF+GFYG+P+   RV SW LL RL   N 
Sbjct: 70  LLWKKELLVSIQSFSVGHIDACIQMEDGFTWRFSGFYGDPIPSKRVCSWALLRRLRDVNL 129

Query: 61  --------------------GDQFTWARNKRDPNSVKERLDRFFTNIEMQDRVWRTKVDH 112
                               G   TW   +   ++V+ERLDRF  +   +D+ +   V+H
Sbjct: 130 LPWVFRQATDNCDLMDLGSSGPFLTWNNRREGRDNVQERLDRFLADSAWRDKFYNANVEH 189

[Close]

BLAST of Lcy09g012520 vs. ExPASy TrEMBL
Match: A0A6J1DUG8 (uncharacterized protein LOC111024135 OS=Momordica charantia OX=3673 GN=LOC111024135 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 61/153 (39.87%), Postives = 77/153 (50.33%), Query Frame = 0


Query: 1   MFWNNPLDLSIMSYSKGHIDTTIKSDKGWWRFTGFYGNPVTGLRVESWTLLERLSSYN-- 60
           + WN+  ++ I S S GHID+ I    G WRFTGFYGNP T  R  SW LLERL+     
Sbjct: 70  LLWNSDSNVRIQSMSPGHIDSIITDKYGSWRFTGFYGNPCTYKRSASWKLLERLARMMDL 129

Query: 61  ----GDQFT-----------WARNKRDPNS--VKERLDRFFTNIEMQDRVWRTKVDHLSY 120
               G  F              RN+       + ERLDRF  N  M ++    KV HL  
Sbjct: 130 PWIIGGDFNEIVSMTEKMGGVCRNESQMRGCPIWERLDRFLINESMLNKCLNLKVTHLEL 189

Query: 121 HSSDHRPIIMDIVWEEPKESKVKKRKKAKFEES 135
            SSDHRPI+    +E P+     K++K +FEES
Sbjct: 190 LSSDHRPILASWDFELPRAWTCHKQRKIRFEES 222

[Close]

BLAST of Lcy09g012520 vs. ExPASy TrEMBL
Match: A0A5C7HK10 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018452 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.3e-16
Identity = 47/133 (35.34%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 1   MFWNNPLDLSIMSYSKGHIDTTIKSDKGW-WRFTGFYGNPVTGLRVESWTLLERL----- 60
           + W   + ++++S+S GHID  I+ D G+ WRF+G YG+P  G RV SW LL RL     
Sbjct: 503 LMWKKEMKVTVLSFSVGHIDVRIQMDDGFMWRFSGMYGDPSPGKRVRSWELLRRLREVDR 562

Query: 61  ----------------SSYNGDQFTWARNKRDPNSVKERLDRFFTNIEMQDRVWRTKVDH 112
                               G +FTW   +    +++ER+DR   N   +DR    KV H
Sbjct: 563 LPWICGGDFNELLCMNEKVRGPKFTWNNKREGKLNIQERIDRILANNLWRDRFEYVKVKH 622

[Close]

BLAST of Lcy09g012520 vs. ExPASy TrEMBL
Match: A0A5C7HUN0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_012174 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 8.8e-16
Identity = 49/160 (30.63%), Postives = 78/160 (48.75%), Query Frame = 0


Query: 1   MFWNNPLDLSIMSYSKGHIDTTIKSDKGW-WRFTGFYGNPVTGLRVESWTLLERLS---- 60
           + W + LD+SI+S+S GHID  I+S+ G+ WRF+GFYG+P    RV SWTLL RL     
Sbjct: 348 LLWKDSLDVSILSFSSGHIDARIQSEDGYPWRFSGFYGDPNPKKRVNSWTLLRRLREVDR 407

Query: 61  --------------------------------------------SYNGDQFTWARNKRDP 112
                                                        Y+G ++ W   ++  
Sbjct: 408 LPWVYSGDFNEVLSQNENCGGSEKVFLNMLLFRQAVEDCDLIDLGYSGPRYMWNNMRKGR 467

[Close]

BLAST of Lcy09g012520 vs. NCBI nr
Match: TXG51627.1 (hypothetical protein EZV62_024151 [Acer yangbiense])

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-18
Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 0


Query: 1   MFWNNPLDLSIMSYSKGHIDTTIKSDKGW-WRFTGFYGNPVTGLRVESWTLLERLSSY-- 60
           + W   L ++++SYS GHID  IK + G+ WRF+G YGNP    RV SW LL RLS    
Sbjct: 386 VLWKKELQVTVISYSVGHIDARIKMEDGFRWRFSGVYGNPSPNKRVNSWELLGRLSEVDR 445

Query: 61  ---------------NGDQFTWARNKRDPNSVKERLDRFFTNIEMQDRVWRTKVDHLSYH 112
                          +G ++TW   +    +++ER+DRFF N   +DR     V+HL ++
Sbjct: 446 FRQAIDKCDLIELGSSGPRYTWNNKREGKFNIQERIDRFFANNLWRDRFEFVMVEHLGFN 505

[Close]

BLAST of Lcy09g012520 vs. NCBI nr
Match: TXG59697.1 (hypothetical protein EZV62_014270 [Acer yangbiense])

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-16
Identity = 49/133 (36.84%), Postives = 71/133 (53.38%), Query Frame = 0


Query: 1   MFWNNPLDLSIMSYSKGHIDTTIKSDKGW-WRFTGFYGNPVTGLRVESWTLLERLSSYN- 60
           + W   L +SI S+S GHID  I+ + G+ WRF+GFYG+P+   RV SW LL RL   N 
Sbjct: 70  LLWKKELLVSIQSFSVGHIDACIQMEDGFTWRFSGFYGDPIPSKRVCSWALLRRLRDVNL 129

Query: 61  --------------------GDQFTWARNKRDPNSVKERLDRFFTNIEMQDRVWRTKVDH 112
                               G   TW   +   ++V+ERLDRF  +   +D+ +   V+H
Sbjct: 130 LPWVFRQATDNCDLMDLGSSGPFLTWNNRREGRDNVQERLDRFLADSAWRDKFYNANVEH 189

[Close]

BLAST of Lcy09g012520 vs. NCBI nr
Match: XP_022157437.1 (uncharacterized protein LOC111024135 [Momordica charantia])

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-16
Identity = 61/153 (39.87%), Postives = 77/153 (50.33%), Query Frame = 0


Query: 1   MFWNNPLDLSIMSYSKGHIDTTIKSDKGWWRFTGFYGNPVTGLRVESWTLLERLSSYN-- 60
           + WN+  ++ I S S GHID+ I    G WRFTGFYGNP T  R  SW LLERL+     
Sbjct: 70  LLWNSDSNVRIQSMSPGHIDSIITDKYGSWRFTGFYGNPCTYKRSASWKLLERLARMMDL 129

Query: 61  ----GDQFT-----------WARNKRDPNS--VKERLDRFFTNIEMQDRVWRTKVDHLSY 120
               G  F              RN+       + ERLDRF  N  M ++    KV HL  
Sbjct: 130 PWIIGGDFNEIVSMTEKMGGVCRNESQMRGCPIWERLDRFLINESMLNKCLNLKVTHLEL 189

Query: 121 HSSDHRPIIMDIVWEEPKESKVKKRKKAKFEES 135
            SSDHRPI+    +E P+     K++K +FEES
Sbjct: 190 LSSDHRPILASWDFELPRAWTCHKQRKIRFEES 222

[Close]

BLAST of Lcy09g012520 vs. NCBI nr
Match: TXG57139.1 (hypothetical protein EZV62_018452 [Acer yangbiense])

HSP 1 Score: 95.1 bits (235), Expect = 4.8e-16
Identity = 47/133 (35.34%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 1   MFWNNPLDLSIMSYSKGHIDTTIKSDKGW-WRFTGFYGNPVTGLRVESWTLLERL----- 60
           + W   + ++++S+S GHID  I+ D G+ WRF+G YG+P  G RV SW LL RL     
Sbjct: 503 LMWKKEMKVTVLSFSVGHIDVRIQMDDGFMWRFSGMYGDPSPGKRVRSWELLRRLREVDR 562

Query: 61  ----------------SSYNGDQFTWARNKRDPNSVKERLDRFFTNIEMQDRVWRTKVDH 112
                               G +FTW   +    +++ER+DR   N   +DR    KV H
Sbjct: 563 LPWICGGDFNELLCMNEKVRGPKFTWNNKREGKLNIQERIDRILANNLWRDRFEYVKVKH 622

[Close]

BLAST of Lcy09g012520 vs. NCBI nr
Match: TXG60811.1 (hypothetical protein EZV62_012174 [Acer yangbiense])

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-15
Identity = 49/160 (30.63%), Postives = 78/160 (48.75%), Query Frame = 0


Query: 1   MFWNNPLDLSIMSYSKGHIDTTIKSDKGW-WRFTGFYGNPVTGLRVESWTLLERLS---- 60
           + W + LD+SI+S+S GHID  I+S+ G+ WRF+GFYG+P    RV SWTLL RL     
Sbjct: 348 LLWKDSLDVSILSFSSGHIDARIQSEDGYPWRFSGFYGDPNPKKRVNSWTLLRRLREVDR 407

Query: 61  --------------------------------------------SYNGDQFTWARNKRDP 112
                                                        Y+G ++ W   ++  
Sbjct: 408 LPWVYSGDFNEVLSQNENCGGSEKVFLNMLLFRQAVEDCDLIDLGYSGPRYMWNNMRKGR 467

The following BLAST results are available for this feature:

BLAST of Lcy09g012520 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g012520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7H3Y3	8.5e-19	39.53	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_02415...	[more]
A0A5C7HRM0	8.0e-17	36.84	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_014270 PE=4 SV=1	[more]
A0A6J1DUG8	1.0e-16	39.87	uncharacterized protein LOC111024135 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5C7HK10	2.3e-16	35.34	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01845...	[more]
A0A5C7HUN0	8.8e-16	30.63	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_012174 PE=4 SV=1	[more]

BLAST of Lcy09g012520 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG51627.1	1.8e-18	39.53	hypothetical protein EZV62_024151 [Acer yangbiense]	[more]
TXG59697.1	1.7e-16	36.84	hypothetical protein EZV62_014270 [Acer yangbiense]	[more]
XP_022157437.1	2.2e-16	39.87	uncharacterized protein LOC111024135 [Momordica charantia]	[more]
TXG57139.1	4.8e-16	35.34	hypothetical protein EZV62_018452 [Acer yangbiense]	[more]
TXG60811.1	1.8e-15	30.63	hypothetical protein EZV62_012174 [Acer yangbiense]	[more]

BLAST of Lcy09g012520 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 43..113 e-value: 1.8E-6 score: 29.9
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 18..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g012520.1	Lcy09g012520.1	mRNA