Lcy09g011980 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g011980
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	30S ribosomal protein S13
Location	Chr09: 13075425 .. 13077179 (-)
RNA-Seq Expression	Lcy09g011980
Synteny	Lcy09g011980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAACCAGAGAGGCGCTCGGAGGTGAATCGAATTTAAGTCCACTTCCTAATGTGCTGAGCTACTGAGAATTTAGAGCAGAGAAGATAATGGCACAGACCTTGGCAATGCCCGTCGCTCCTTCGCTCTCCGTTATCTGCAATGGTCGAAACTCCAATCCTCTCTCCAACACCCTCTCCTTCCCCATTTCAAACCCTCAGGTAAATTTTCTCTTCTTAGGACTCCAGCTATGGACTCCCTTTCTTCAATTTTATCCTCTTGCTCCATTCAATTACTTGGATTCTAAAATTTTCATTTTTGTGCCTTAATTTCTTGTATATTTTCGGATGTGGAGGAGTTTTTGCCCGATTATATATATCCTGCGAGTTTGCAATTGCCTATCCTTCTCTTGGGTTTCAGATTGTTTCTGCTTCTCGATTTATGTTCGATTCAGAAATTATTTCATTCCGCTTGCCAGTGTACGAGTATTGCAGCTTGATTTTGTGAAATTATTTTTACTGCTCATAGTCTCAACTCTTAGCTTTTTCTTGCTTCAGTTTGAATTTCCTTTTAGTTATGGTGATTTGGGTTTTTCCTTGGTCACTCAACTGAACTTTGTCATGTTTCATATCAGTGCCCTGCTATTTTCAAGTAATTGATCTGAATAGTGTGATGCAACAAAAGTTCTACATTTCGTTTCCCTAACTGCTATTCCCAAGAGGAACCAAATTCATGATCCTCATTCTTTTTCCCCTCACCCTGTCTGTCTATACATGATTTATTATAAAGATTAAGCAGATATAAGGTCTCCCCTATAGCAATTGGACTGAAAGAGTAGATTCTGCGGATTGATATCTGACCTTAAATGGCAATTATACTCGCTGGCCTATGCTTGACACATATCAATTTTGTCGTATGGGTTATTCTTTTGATTGGGAATCTGCAGTAGTAACTATACAAGAATCCTGTCTCTTCTTCTTGCATGATCCCTCAATTTTCTTCAGGTTCGTGGTCTTCAAATCACATGTGTCCGTGTTGGAGGAGTTGAGATACCGAACAACAAGCGAGTTCAATACTCCCTTCAATATATACATGGAATTGGCCGCAACAATGCCAAGAAAATACTGTTCGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCGGAGGATGAGCTCATATCCATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGGTCTCTCTCTCATTCTCTGTCTGTGTGTGTAGCTTAGAAATACAAATGTTAGATGTCTCTGTGCTTTTCTGGGTTGTGCTTACAAATGTGAATGATGGTTTTTGCAGAGGCGGTTCAATGCATTAGCCATAAGGAGATTGATAGAGATTCAGTGTTATAGAGGAATTCGACACACTCAGGGGTTGCCTTGCAGAGGGCAGCGAACGAAAAACAACTGCAGGACCTTGAAGGGTAAGAAGATTACTATTGCAGGGAAGAAGAAGGCTCCTCGTTGAGGTCCTTACGATCGAACCGATTGTTCTTTGATTGCACTGAGTAAATCTCTTCTAAAAGCTTAGATGTATTGTTTTAACTCTGGAATTGCATCTAGTTTCCTCATGGAAATATAGTTTCTTGCAAATACACTGTGTTATTTTATAGCTGTGCCTTGTTCTGTTTTACAGATGTGCTCACCCTCTTAAAATGCTCAATATTCTTTATATTGTTAGTAAAAGATTGAGAGTGGTGGTCTTAACAGATCATTTAGTTTCTTTGTGCTTCTCCATAC

mRNA sequence

TTGAAACCAGAGAGGCGCTCGGAGGTGAATCGAATTTAAGTCCACTTCCTAATGTGCTGAGCTACTGAGAATTTAGAGCAGAGAAGATAATGGCACAGACCTTGGCAATGCCCGTCGCTCCTTCGCTCTCCGTTATCTGCAATGGTCGAAACTCCAATCCTCTCTCCAACACCCTCTCCTTCCCCATTTCAAACCCTCAGGTTCGTGGTCTTCAAATCACATGTGTCCGTGTTGGAGGAGTTGAGATACCGAACAACAAGCGAGTTCAATACTCCCTTCAATATATACATGGAATTGGCCGCAACAATGCCAAGAAAATACTGTTCGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCGGAGGATGAGCTCATATCCATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGGTTCAATGCATTAGCCATAAGGAGATTGATAGAGATTCAGTGTTATAGAGGAATTCGACACACTCAGGGGTTGCCTTGCAGAGGGCAGCGAACGAAAAACAACTGCAGGACCTTGAAGGGTAAGAAGATTACTATTGCAGGGAAGAAGAAGGCTCCTCGTTGAGGTCCTTACGATCGAACCGATTGTTCTTTGATTGCACTGAGTAAATCTCTTCTAAAAGCTTAGATGTATTGTTTTAACTCTGGAATTGCATCTAGTTTCCTCATGGAAATATAGTTTCTTGCAAATACACTGTGTTATTTTATAGCTGTGCCTTGTTCTGTTTTACAGATGTGCTCACCCTCTTAAAATGCTCAATATTCTTTATATTGTTAGTAAAAGATTGAGAGTGGTGGTCTTAACAGATCATTTAGTTTCTTTGTGCTTCTCCATAC

Coding sequence (CDS)

ATGGCACAGACCTTGGCAATGCCCGTCGCTCCTTCGCTCTCCGTTATCTGCAATGGTCGAAACTCCAATCCTCTCTCCAACACCCTCTCCTTCCCCATTTCAAACCCTCAGGTTCGTGGTCTTCAAATCACATGTGTCCGTGTTGGAGGAGTTGAGATACCGAACAACAAGCGAGTTCAATACTCCCTTCAATATATACATGGAATTGGCCGCAACAATGCCAAGAAAATACTGTTCGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCGGAGGATGAGCTCATATCCATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGGTTCAATGCATTAGCCATAAGGAGATTGATAGAGATTCAGTGTTATAGAGGAATTCGACACACTCAGGGGTTGCCTTGCAGAGGGCAGCGAACGAAAAACAACTGCAGGACCTTGAAGGGTAAGAAGATTACTATTGCAGGGAAGAAGAAGGCTCCTCGTTGA

Protein sequence

MAQTLAMPVAPSLSVICNGRNSNPLSNTLSFPISNPQVRGLQITCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEDELISIRDEVSKYMIEGDLRRFNALAIRRLIEIQCYRGIRHTQGLPCRGQRTKNNCRTLKGKKITIAGKKKAPR

Homology

[Close]

BLAST of Lcy09g011980 vs. ExPASy Swiss-Prot
Match: P42732 (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 7.2e-65
Identity = 127/169 (75.15%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNSNPLS-NTLSFPISN-PQVRGLQITCVRVGGVEIPNNKR 60
           MAQ +AMPVA SLS+ICN   SNPLS NTL+ P SN P  + L I C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEDELISIRDEVSKYMIEGDLRRFNAL 120
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++E+ELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLIEIQCYRGIRHTQGLPCRGQRTKNNCRTLKGKKITIAGKKKAPR 168
           AI+RL EIQCYRG+RH QGLPCRGQRTKNNCRTLKGKKI IAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]

BLAST of Lcy09g011980 vs. ExPASy Swiss-Prot
Match: P82163 (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 PE=1 SV=3)

HSP 1 Score: 235.7 bits (600), Expect = 3.7e-61
Identity = 122/169 (72.19%), Postives = 144/169 (85.21%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNSNPL-SNTLSF-PISNPQVRGLQITCVRVGGVEIPNNKR 60
           MA TLA PVAPS+S+ICN + S  L S++L+F P++     GL I CVRVG VEIPNNKR
Sbjct: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLAFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEDELISIRDEVSKYMIEGDLRRFNAL 120
           V+YSLQYIHGIGR+ A++IL DL +ENK+TK+LSEDEL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120

Query: 121 AIRRLIEIQCYRGIRHTQGLPCRGQRTKNNCRTLK-GKKITIAGKKKAP 167
           AIRRL EIQCYRG+RH QGLPCRGQRTKNNCRTLK GK++ IAGKKK P
Sbjct: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPP 169

[Close]

BLAST of Lcy09g011980 vs. ExPASy Swiss-Prot
Match: Q9CA19 (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-31
Identity = 68/148 (45.95%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 20  RNSNPLSNTLSFPISNPQVRGLQITCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILF 79
           R++  L +     + N    GL++  +RVG  E+PNNK ++  LQ ++GIGR  + ++L 
Sbjct: 6   RSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65

Query: 80  DLNVENKITKDLSEDELISIRDEVSKYMIEGDLRRFNALAIRRLIEIQCYRGIRHTQGLP 139
            L + NK+ +DL+  ELI +R+EV ++    +LRR     I+RL+E+ CYRG RH  GLP
Sbjct: 66  HLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLP 125

Query: 140 CRGQRTKNNCRTLKGKKITIAGKKKAPR 168
           CRGQRT  N RT KGK + IAGKKKAPR
Sbjct: 126 CRGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]

BLAST of Lcy09g011980 vs. ExPASy Swiss-Prot
Match: C5D3U2 (30S ribosomal protein S13 OS=Geobacillus sp. (strain WCH70) OX=471223 GN=rpsM PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.9e-29
Identity = 69/119 (57.98%), Postives = 88/119 (73.95%), Query Frame = 0


Query: 47  RVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNV-ENKITKDLSEDELISIRDEVSK 106
           R+ GV+IP +KRV  SL YI+GIG++ AKKIL +  V E+   +DL+E+EL  IR+ V +
Sbjct: 3   RIAGVDIPRDKRVVISLTYIYGIGKSTAKKILAEAGVSEDTRVRDLTEEELGRIREIVGR 62

Query: 107 YMIEGDLRRFNALAIRRLIEIQCYRGIRHTQGLPCRGQRTKNNCRTLKGKKITIAGKKK 165
             +EGDLRR  +L I+RLIEI CYRGIRH +GLP RGQ TKNN RT KG + T+A KKK
Sbjct: 63  LKVEGDLRREVSLNIKRLIEIGCYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121

[Close]

BLAST of Lcy09g011980 vs. ExPASy Swiss-Prot
Match: A5FZU3 (30S ribosomal protein S13 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rpsM PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-28
Identity = 67/123 (54.47%), Postives = 89/123 (72.36%), Query Frame = 0


Query: 47  RVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNV-ENKITKDLSEDELISIRDEVSK 106
           R+ GV IP+NKRV  SL+YI+GIG   A++I   L + E+K    LSEDE++ IR+ + +
Sbjct: 3   RIAGVNIPSNKRVLISLRYIYGIGPAKAREICQSLEIGEDKRVNQLSEDEIMKIRELIDR 62

Query: 107 -YMIEGDLRRFNALAIRRLIEIQCYRGIRHTQGLPCRGQRTKNNCRTLKGKKITIAGKKK 166
            Y +EGDLRR  A+ I+RL+++ CYRG+RH +GLP RGQRT  N RT KGK + IAGKKK
Sbjct: 63  DYRVEGDLRREVAMNIKRLVDLGCYRGLRHRKGLPVRGQRTHTNARTRKGKAVAIAGKKK 122

Query: 167 APR 168
           A R
Sbjct: 123 ATR 125

[Close]

BLAST of Lcy09g011980 vs. ExPASy TrEMBL
Match: A0A5A7TVL6 (30S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00390 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.5e-81
Identity = 154/167 (92.22%), Postives = 161/167 (96.41%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNSNPLSNTLSFPISNPQVRGLQITCVRVGGVEIPNNKRVQ 60
           MAQTLA+P+APSLS+ICN RNSNPLSNTLSFPISNPQVRGLQI CVRVGGVEIPNNKRVQ
Sbjct: 40  MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 99

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEDELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDLSE+EL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 100 YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 159

Query: 121 RRLIEIQCYRGIRHTQGLPCRGQRTKNNCRTLKGKKITIAGKKKAPR 168
           RRL EIQCYRGIRH QGLPCRGQRTKNNCRTLKGKK+ IAGKKKAPR
Sbjct: 160 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 206

[Close]

BLAST of Lcy09g011980 vs. ExPASy TrEMBL
Match: A0A1S3CPR4 (30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.5e-81
Identity = 154/167 (92.22%), Postives = 161/167 (96.41%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNSNPLSNTLSFPISNPQVRGLQITCVRVGGVEIPNNKRVQ 60
           MAQTLA+P+APSLS+ICN RNSNPLSNTLSFPISNPQVRGLQI CVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEDELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDLSE+EL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLIEIQCYRGIRHTQGLPCRGQRTKNNCRTLKGKKITIAGKKKAPR 168
           RRL EIQCYRGIRH QGLPCRGQRTKNNCRTLKGKK+ IAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of Lcy09g011980 vs. ExPASy TrEMBL
Match: A0A6J1CJS2 (30S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011934 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 7.0e-79
Identity = 150/167 (89.82%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNSNPLSNTLSFPISNPQVRGLQITCVRVGGVEIPNNKRVQ 60
           MAQ+LAMPVAPSLS+ICNGRN NPLS TLSFPIS+PQVRGLQI CVRVGGVEIPNNKR+Q
Sbjct: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEDELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKIL+DL++ENKITKDLSE+ELISIRDEVSK+MIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI 120

Query: 121 RRLIEIQCYRGIRHTQGLPCRGQRTKNNCRTLKGKKITIAGKKKAPR 168
           RRL EIQCYRGIRH QGLPCRGQRTKNNCRTLKGKK+ I GKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 167

[Close]

BLAST of Lcy09g011980 vs. ExPASy TrEMBL
Match: A0A0A0KN28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.6e-78
Identity = 153/167 (91.62%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNSNPLSNTLSFPISNPQVRGLQITCVRVGGVEIPNNKRVQ 60
           MAQT A+P+A SLS+I N RN NPLSNTLSFPISNPQVRGLQI CVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEDELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLNVENKITKDLSE+ELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLIEIQCYRGIRHTQGLPCRGQRTKNNCRTLKGKKITIAGKKKAPR 168
           RRL EIQCYRGIRH QGLPCRGQRTKNNCRTLKGKKI IAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

[Close]

BLAST of Lcy09g011980 vs. ExPASy TrEMBL
Match: A0A6J1JXU5 (30S ribosomal protein S13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111489278 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.5e-78
Identity = 150/167 (89.82%), Postives = 157/167 (94.01%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNSNPLSNTLSFPISNPQVRGLQITCVRVGGVEIPNNKRVQ 60
           MA TLA+PVAPSLS+ICN R SNPLSN +SFPISNP+V GLQI CVRVGGVEIPNNKRV 
Sbjct: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEDELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLNVENKITKDL+E+ELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLIEIQCYRGIRHTQGLPCRGQRTKNNCRTLKGKKITIAGKKKAPR 168
           RRL EIQCYRGIRH QGLPCRGQRTKNNCRTLKGKK+ IAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of Lcy09g011980 vs. NCBI nr
Match: XP_038876079.1 (30S ribosomal protein S13, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 315.1 bits (806), Expect = 3.7e-82
Identity = 158/167 (94.61%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNSNPLSNTLSFPISNPQVRGLQITCVRVGGVEIPNNKRVQ 60
           MAQ+LAMP+APSLSVICN RNSNPLSNTLSFPISNPQVRGLQI CVRVGGVEIPNNKRVQ
Sbjct: 1   MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEDELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLNVENKITKDLSE+ELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLIEIQCYRGIRHTQGLPCRGQRTKNNCRTLKGKKITIAGKKKAPR 168
           RRL EIQCYRGIRH QGLPCRGQRTKNNCRTLKGKK+ IAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of Lcy09g011980 vs. NCBI nr
Match: KAA0047502.1 (30S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK26474.1 30S ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 154/167 (92.22%), Postives = 161/167 (96.41%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNSNPLSNTLSFPISNPQVRGLQITCVRVGGVEIPNNKRVQ 60
           MAQTLA+P+APSLS+ICN RNSNPLSNTLSFPISNPQVRGLQI CVRVGGVEIPNNKRVQ
Sbjct: 40  MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 99

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEDELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDLSE+EL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 100 YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 159

Query: 121 RRLIEIQCYRGIRHTQGLPCRGQRTKNNCRTLKGKKITIAGKKKAPR 168
           RRL EIQCYRGIRH QGLPCRGQRTKNNCRTLKGKK+ IAGKKKAPR
Sbjct: 160 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 206

[Close]

BLAST of Lcy09g011980 vs. NCBI nr
Match: XP_008465819.1 (PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 154/167 (92.22%), Postives = 161/167 (96.41%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNSNPLSNTLSFPISNPQVRGLQITCVRVGGVEIPNNKRVQ 60
           MAQTLA+P+APSLS+ICN RNSNPLSNTLSFPISNPQVRGLQI CVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEDELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDLSE+EL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLIEIQCYRGIRHTQGLPCRGQRTKNNCRTLKGKKITIAGKKKAPR 168
           RRL EIQCYRGIRH QGLPCRGQRTKNNCRTLKGKK+ IAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of Lcy09g011980 vs. NCBI nr
Match: XP_022141626.1 (30S ribosomal protein S13, chloroplastic-like [Momordica charantia])

HSP 1 Score: 303.1 bits (775), Expect = 1.4e-78
Identity = 150/167 (89.82%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNSNPLSNTLSFPISNPQVRGLQITCVRVGGVEIPNNKRVQ 60
           MAQ+LAMPVAPSLS+ICNGRN NPLS TLSFPIS+PQVRGLQI CVRVGGVEIPNNKR+Q
Sbjct: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEDELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKIL+DL++ENKITKDLSE+ELISIRDEVSK+MIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI 120

Query: 121 RRLIEIQCYRGIRHTQGLPCRGQRTKNNCRTLKGKKITIAGKKKAPR 168
           RRL EIQCYRGIRH QGLPCRGQRTKNNCRTLKGKK+ I GKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 167

[Close]

BLAST of Lcy09g011980 vs. NCBI nr
Match: XP_004140327.1 (30S ribosomal protein S13, chloroplastic [Cucumis sativus] >KAE8652084.1 hypothetical protein Csa_018654 [Cucumis sativus])

HSP 1 Score: 302.0 bits (772), Expect = 3.2e-78
Identity = 153/167 (91.62%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNSNPLSNTLSFPISNPQVRGLQITCVRVGGVEIPNNKRVQ 60
           MAQT A+P+A SLS+I N RN NPLSNTLSFPISNPQVRGLQI CVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEDELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLNVENKITKDLSE+ELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLIEIQCYRGIRHTQGLPCRGQRTKNNCRTLKGKKITIAGKKKAPR 168
           RRL EIQCYRGIRH QGLPCRGQRTKNNCRTLKGKKI IAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

[Close]

BLAST of Lcy09g011980 vs. TAIR 10
Match: AT5G14320.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 248.1 bits (632), Expect = 5.1e-66
Identity = 127/169 (75.15%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNSNPLS-NTLSFPISN-PQVRGLQITCVRVGGVEIPNNKR 60
           MAQ +AMPVA SLS+ICN   SNPLS NTL+ P SN P  + L I C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEDELISIRDEVSKYMIEGDLRRFNAL 120
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++E+ELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLIEIQCYRGIRHTQGLPCRGQRTKNNCRTLKGKKITIAGKKKAPR 168
           AI+RL EIQCYRG+RH QGLPCRGQRTKNNCRTLKGKKI IAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]

BLAST of Lcy09g011980 vs. TAIR 10
Match: AT5G14320.2 (Ribosomal protein S13/S18 family )

HSP 1 Score: 152.9 bits (385), Expect = 2.3e-37
Identity = 80/114 (70.18%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNSNPLS-NTLSFPISN-PQVRGLQITCVRVGGVEIPNNKR 60
           MAQ +AMPVA SLS+ICN   SNPLS NTL+ P SN P  + L I C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEDELISIRDEVSKYMIEGDL 113
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++E+ELI +RDEVSKYMIEGDL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDL 114

[Close]

BLAST of Lcy09g011980 vs. TAIR 10
Match: AT1G77750.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 137.5 bits (345), Expect = 9.8e-33
Identity = 68/148 (45.95%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 20  RNSNPLSNTLSFPISNPQVRGLQITCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILF 79
           R++  L +     + N    GL++  +RVG  E+PNNK ++  LQ ++GIGR  + ++L 
Sbjct: 6   RSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65

Query: 80  DLNVENKITKDLSEDELISIRDEVSKYMIEGDLRRFNALAIRRLIEIQCYRGIRHTQGLP 139
            L + NK+ +DL+  ELI +R+EV ++    +LRR     I+RL+E+ CYRG RH  GLP
Sbjct: 66  HLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLP 125

Query: 140 CRGQRTKNNCRTLKGKKITIAGKKKAPR 168
           CRGQRT  N RT KGK + IAGKKKAPR
Sbjct: 126 CRGQRTSTNARTKKGKAVAIAGKKKAPR 153

The following BLAST results are available for this feature:

BLAST of Lcy09g011980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42732	7.2e-65	75.15	30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P82163	3.7e-61	72.19	30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 P...	[more]
Q9CA19	1.4e-31	45.95	Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
C5D3U2	4.9e-29	57.98	30S ribosomal protein S13 OS=Geobacillus sp. (strain WCH70) OX=471223 GN=rpsM PE...	[more]
A5FZU3	1.1e-28	54.47	30S ribosomal protein S13 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rps...	[more]

BLAST of Lcy09g011980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TVL6	7.5e-81	92.22	30S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CPR4	7.5e-81	92.22	30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408...	[more]
A0A6J1CJS2	7.0e-79	89.82	30S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A0A0KN28	1.6e-78	91.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1	[more]
A0A6J1JXU5	4.5e-78	89.82	30S ribosomal protein S13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Lcy09g011980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876079.1	3.7e-82	94.61	30S ribosomal protein S13, chloroplastic-like [Benincasa hispida]	[more]
KAA0047502.1	1.5e-80	92.22	30S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK26474.1 30S ribosomal p...	[more]
XP_008465819.1	1.5e-80	92.22	PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo]	[more]
XP_022141626.1	1.4e-78	89.82	30S ribosomal protein S13, chloroplastic-like [Momordica charantia]	[more]
XP_004140327.1	3.2e-78	91.62	30S ribosomal protein S13, chloroplastic [Cucumis sativus] >KAE8652084.1 hypothe...	[more]

BLAST of Lcy09g011980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14320.1	5.1e-66	75.15	Ribosomal protein S13/S18 family	[more]
AT5G14320.2	2.3e-37	70.18	Ribosomal protein S13/S18 family	[more]
AT1G77750.1	9.8e-33	45.95	Ribosomal protein S13/S18 family	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 47..151 e-value: 2.3E-31 score: 108.8
IPR001892	Ribosomal protein S13	HAMAP	MF_01315	Ribosomal_S13_S18	coord: 45..161 score: 24.052856
IPR001892	Ribosomal protein S13	PROSITE	PS50159	RIBOSOMAL_S13_2	coord: 48..154 score: 34.631672
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	4.10.910.10	30s ribosomal protein s13, domain 2	coord: 115..167 e-value: 1.3E-25 score: 90.8
None	No IPR available	GENE3D	1.10.8.50		coord: 46..114 e-value: 1.9E-25 score: 90.8
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 1..165
IPR019980	Ribosomal protein S13, bacterial-type	TIGRFAM	TIGR03631	TIGR03631	coord: 47..156 e-value: 8.6E-41 score: 136.9
IPR019980	Ribosomal protein S13, bacterial-type	PANTHER	PTHR10871:SF1	37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL	coord: 1..165
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 130..143
IPR010979	Ribosomal protein S13-like, H2TH	SUPERFAMILY	46946	S13-like H2TH domain	coord: 46..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g011980.1	Lcy09g011980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding