Lcy09g011040 (gene) Sponge gourd (P93075) v1

Overview
NameLcy09g011040
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationChr09: 11807376 .. 11807678 (-)
RNA-Seq ExpressionLcy09g011040
SyntenyLcy09g011040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTATAGAGCCGTGGGAATAACTTTTCCGCTGCATTTTCAGGCAAATGGACTCTGCAAAGAAGCTTTCTCTCTTAAGGGTTCTTCTCAAAGAATTATTCTCTTCCAAGCTATCTTTGCAATCGCTTTGAGGTTCATTTGGCAGGAGCACAATGCTCGGATTTTTAACAACTCCTACAGTTCGACTGCCCATATTTGTGAACAAATCATTGCTTCTGCCTCTTTCTGGTCTTCCACTTCAAAGCTCTTTGCCAATTATGATGTATCTTCCAAAGCTTTGAATTGGGAAGCTTTTATGTAG

mRNA sequence

ATGCTCTATAGAGCCGTGGGAATAACTTTTCCGCTGCATTTTCAGGCAAATGGACTCTGCAAAGAAGCTTTCTCTCTTAAGGGTTCTTCTCAAAGAATTATTCTCTTCCAAGCTATCTTTGCAATCGCTTTGAGGTTCATTTGGCAGGAGCACAATGCTCGGATTTTTAACAACTCCTACAGTTCGACTGCCCATATTTGTGAACAAATCATTGCTTCTGCCTCTTTCTGGTCTTCCACTTCAAAGCTCTTTGCCAATTATGATGTATCTTCCAAAGCTTTGAATTGGGAAGCTTTTATGTAG

Coding sequence (CDS)

ATGCTCTATAGAGCCGTGGGAATAACTTTTCCGCTGCATTTTCAGGCAAATGGACTCTGCAAAGAAGCTTTCTCTCTTAAGGGTTCTTCTCAAAGAATTATTCTCTTCCAAGCTATCTTTGCAATCGCTTTGAGGTTCATTTGGCAGGAGCACAATGCTCGGATTTTTAACAACTCCTACAGTTCGACTGCCCATATTTGTGAACAAATCATTGCTTCTGCCTCTTTCTGGTCTTCCACTTCAAAGCTCTTTGCCAATTATGATGTATCTTCCAAAGCTTTGAATTGGGAAGCTTTTATGTAG

Protein sequence

MLYRAVGITFPLHFQANGLCKEAFSLKGSSQRIILFQAIFAIALRFIWQEHNARIFNNSYSSTAHICEQIIASASFWSSTSKLFANYDVSSKALNWEAFM
Homology
[Close]
BLAST of Lcy09g011040 vs. ExPASy TrEMBL
Match: A0A5D3DLM2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00780 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-07
Identity = 39/99 (39.39%), Postives = 50/99 (50.51%), Query Frame = 0 

Query: 1   MLYRAVGITFPLHFQANGLCKEAFSLKGSSQRIILFQAIFAIALRFIWQEHNARIFNNSY 60
           +LY +V     L  +   LC      K  +++ ++    +A AL  IW E NARIFN   
Sbjct: 825 LLYDSVNTAEQLTKRMPNLCSRPSCWKQKTKKNVILYNTYASALWNIWLERNARIFNGKE 884

Query: 61  SSTAHICEQIIASASFWSSTSKLFANYDVSSKALNWEAF 100
            + A I E I A A  W+S S LF NY  SS ALN  AF
Sbjct: 885 KTVAEIWEDIKALAGLWTSRSSLFTNYQASSIALNLNAF 923

[Close]
BLAST of Lcy09g011040 vs. ExPASy TrEMBL
Match: A0A5A7TCY9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002480 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-07
Identity = 39/99 (39.39%), Postives = 50/99 (50.51%), Query Frame = 0 

Query: 1   MLYRAVGITFPLHFQANGLCKEAFSLKGSSQRIILFQAIFAIALRFIWQEHNARIFNNSY 60
           +LY +V     L  +   LC      K  +++ ++    +A AL  IW E NARIFN   
Sbjct: 724 LLYDSVNTAEQLTKRMPNLCSRPSCWKQKTKKNVILYNTYASALWNIWLERNARIFNGKE 783

Query: 61  SSTAHICEQIIASASFWSSTSKLFANYDVSSKALNWEAF 100
            + A I E I A A  W+S S LF NY  SS ALN  AF
Sbjct: 784 KTVAEIWEDIKALAGLWTSRSSLFTNYQASSIALNLNAF 822

[Close]
BLAST of Lcy09g011040 vs. ExPASy TrEMBL
Match: A0A5A7TES3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00040 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 36/81 (44.44%), Postives = 45/81 (55.56%), Query Frame = 0 

Query: 19  LCKEAFSLKGSSQRIILFQAIFAIALRFIWQEHNARIFNNSYSSTAHICEQIIASASFWS 78
           LC    S K  +++ ++    +A AL  IW E NARIFN    + A I E I A A  W+
Sbjct: 463 LCITMCSWKQKTKKNVILYNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWT 522

Query: 79  STSKLFANYDVSSKALNWEAF 100
           S S LF+NY  SS ALN  AF
Sbjct: 523 SRSSLFSNYQASSIALNLNAF 543

[Close]
BLAST of Lcy09g011040 vs. ExPASy TrEMBL
Match: A0A5D3BU35 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00910 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.1e-06
Identity = 44/104 (42.31%), Postives = 56/104 (53.85%), Query Frame = 0 

Query: 4   RAVGITFPLHFQANGLC---KE-AFSLKGSSQR----IILFQAIFAIALRFIWQEHNARI 63
           +++  T   H  +N  C   KE  FS+   +Q+    +ILF   +A AL  IW E NARI
Sbjct: 196 KSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNT-YASALWNIWLERNARI 255

Query: 64  FNNSYSSTAHICEQIIASASFWSSTSKLFANYDVSSKALNWEAF 100
           FN    + A I E I A A  W+S S LF+NY  SS ALN  AF
Sbjct: 256 FNGKEKTAAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAF 298

[Close]
BLAST of Lcy09g011040 vs. ExPASy TrEMBL
Match: A0A5D3DM72 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002870 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.8e-06
Identity = 36/81 (44.44%), Postives = 45/81 (55.56%), Query Frame = 0 

Query: 19   LCKEAFSLKGSSQRIILFQAIFAIALRFIWQEHNARIFNNSYSSTAHICEQIIASASFWS 78
            LC    S K  +++ ++    +A AL  IW E NARIFN    + A I E I A A  W+
Sbjct: 976  LCITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWT 1035

Query: 79   STSKLFANYDVSSKALNWEAF 100
            S S LF+NY  SS ALN  AF
Sbjct: 1036 SRSSLFSNYQASSIALNLNAF 1056

[Close]
BLAST of Lcy09g011040 vs. NCBI nr
Match: KAA0039966.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 39/99 (39.39%), Postives = 50/99 (50.51%), Query Frame = 0 

Query: 1   MLYRAVGITFPLHFQANGLCKEAFSLKGSSQRIILFQAIFAIALRFIWQEHNARIFNNSY 60
           +LY +V     L  +   LC      K  +++ ++    +A AL  IW E NARIFN   
Sbjct: 724 LLYDSVNTAEQLTKRMPNLCSRPSCWKQKTKKNVILYNTYASALWNIWLERNARIFNGKE 783

Query: 61  SSTAHICEQIIASASFWSSTSKLFANYDVSSKALNWEAF 100
            + A I E I A A  W+S S LF NY  SS ALN  AF
Sbjct: 784 KTVAEIWEDIKALAGLWTSRSSLFTNYQASSIALNLNAF 822

[Close]
BLAST of Lcy09g011040 vs. NCBI nr
Match: TYK24536.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 39/99 (39.39%), Postives = 50/99 (50.51%), Query Frame = 0 

Query: 1   MLYRAVGITFPLHFQANGLCKEAFSLKGSSQRIILFQAIFAIALRFIWQEHNARIFNNSY 60
           +LY +V     L  +   LC      K  +++ ++    +A AL  IW E NARIFN   
Sbjct: 825 LLYDSVNTAEQLTKRMPNLCSRPSCWKQKTKKNVILYNTYASALWNIWLERNARIFNGKE 884

Query: 61  SSTAHICEQIIASASFWSSTSKLFANYDVSSKALNWEAF 100
            + A I E I A A  W+S S LF NY  SS ALN  AF
Sbjct: 885 KTVAEIWEDIKALAGLWTSRSSLFTNYQASSIALNLNAF 923

[Close]
BLAST of Lcy09g011040 vs. NCBI nr
Match: KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-06
Identity = 36/81 (44.44%), Postives = 45/81 (55.56%), Query Frame = 0 

Query: 19  LCKEAFSLKGSSQRIILFQAIFAIALRFIWQEHNARIFNNSYSSTAHICEQIIASASFWS 78
           LC    S K  +++ ++    +A AL  IW E NARIFN    + A I E I A A  W+
Sbjct: 463 LCITMCSWKQKTKKNVILYNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWT 522

Query: 79  STSKLFANYDVSSKALNWEAF 100
           S S LF+NY  SS ALN  AF
Sbjct: 523 SRSSLFSNYQASSIALNLNAF 543

[Close]
BLAST of Lcy09g011040 vs. NCBI nr
Match: TYK02997.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-06
Identity = 44/104 (42.31%), Postives = 56/104 (53.85%), Query Frame = 0 

Query: 4   RAVGITFPLHFQANGLC---KE-AFSLKGSSQR----IILFQAIFAIALRFIWQEHNARI 63
           +++  T   H  +N  C   KE  FS+   +Q+    +ILF   +A AL  IW E NARI
Sbjct: 196 KSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNT-YASALWNIWLERNARI 255

Query: 64  FNNSYSSTAHICEQIIASASFWSSTSKLFANYDVSSKALNWEAF 100
           FN    + A I E I A A  W+S S LF+NY  SS ALN  AF
Sbjct: 256 FNGKEKTAAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAF 298

[Close]
BLAST of Lcy09g011040 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 5.7e-06
Identity = 36/81 (44.44%), Postives = 45/81 (55.56%), Query Frame = 0 

Query: 19   LCKEAFSLKGSSQRIILFQAIFAIALRFIWQEHNARIFNNSYSSTAHICEQIIASASFWS 78
            LC    S K  +++ ++    +A AL  IW E NARIFN    + A I E I A A  W+
Sbjct: 1039 LCITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWT 1098

Query: 79   STSKLFANYDVSSKALNWEAF 100
            S S LF+NY  SS ALN  AF
Sbjct: 1099 SRSSLFSNYQASSIALNLNAF 1119

The following BLAST results are available for this feature:
BLAST of Lcy09g011040 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy09g011040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DLM21.5e-0739.39LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TCY91.5e-0739.39LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TES31.6e-0644.44LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3BU352.1e-0642.31LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3DM722.8e-0644.44LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of Lcy09g011040 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0039966.13.0e-0739.39LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK24536.13.0e-0739.39LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0040037.13.4e-0644.44LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK02997.14.4e-0642.31LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK06777.15.7e-0644.44LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
BLAST of Lcy09g011040 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy09g011040.1Lcy09g011040.1mRNA