Lcy09g010830 (gene) Sponge gourd (P93075) v1

Overview
NameLcy09g010830
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr09: 11553787 .. 11554887 (-)
RNA-Seq ExpressionLcy09g010830
SyntenyLcy09g010830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAACTCCTCACTTGCTAGCTACTTCATTCTTTCCTTTCTCTCTCGCCGCCCGCCGCCCTCTGTCTTCTTTTCCGGCCACCCACAATGGGAAGCAACGGGCCATCAGCTAAGCTTGAAAGGTCTCTCTCCTTGACCTCCGAGCCCAGGACTCTTACTAAGGAGCAGTATGACTTGGTCAGGGTATTAATATACATATATATATTCTTACTATATTACTTCTACTTTAATATTCTAGACGTTTTAACATCACTTTTTTTCTTTTTTAATGAAAGTTTTTTCTTTGTTTTGTGTAACAGACATTGGCGTCCATGCAGGCCTTGGAGAAACAGCGCCTCGCCGGAAACAATAATGTAAAAATGAACACTACTGCTCAAAACCGCCGTTAAAAAGAATAATATTAATAAACATTAAGCTACTTATGGGCTTGAAAATGAATATGGAACCAAACAAGAAGACAAAGGTTTTTCATTTTACACAATATAATCAGCATTTGAATCCCAATGGCATAAAAAAAATTTGATCTTTCTTTAACATTTTCCCATTCTTAAAGATCGAGATCTTCTACAGAAACCAGGGTTTTCCTTTTGGATTTCTGTACTGTATTAAAAGCTAGAAAAGGTTCTTATGTTCATATTTTTTTTTAATGTTTTTAAAATTTAACTATAACATTTGATCAAATTGTAAAAACGCAGTCTGGTACTGTGCCATTGTTTTGAGGATGTGAGGTTGTTTGTTTTTTGTAGGGTTCAGAGAGTGGAGGAGCAAAGGGAAAAGCTGATCGTGATGAAGGGGCGTCGGGTTCGGCGGGGATGAAGCTTCCGGCGTGATTCATGAGAAACCGGTGGCCGCCGGCGGCCTGGCCGGCCGGCGAAACTTGGGAGTTGCTTCGACGTTTGCTAGCTTTTTCTTTTTTCCTTCCTGTTGTGTGTGTTTAATGAAGTTATGTGTGCCCTCACGTGCCTTGCACGTGTTTTTAATAATAAAGAATGCTGGTTTGTTGTGGTGATGTCATCTTATTTTGTTCTTATTTGGAGAGAGAAATATTTATACTTGGAGATTTTTTTAAGTGCTCTTGGTGTAATGAGATCCATAGTTTTAC

mRNA sequence

CAAAACTCCTCACTTGCTAGCTACTTCATTCTTTCCTTTCTCTCTCGCCGCCCGCCGCCCTCTGTCTTCTTTTCCGGCCACCCACAATGGGAAGCAACGGGCCATCAGCTAAGCTTGAAAGGTCTCTCTCCTTGACCTCCGAGCCCAGGACTCTTACTAAGGAGCAGTATGACTTGACATTGGCGTCCATGCAGGCCTTGGAGAAACAGCGCCTCGCCGGAAACAATAATGGTTCAGAGAGTGGAGGAGCAAAGGGAAAAGCTGATCGTGATGAAGGGGCGTCGGGTTCGGCGGGGATGAAGCTTCCGGCGTGATTCATGAGAAACCGGTGGCCGCCGGCGGCCTGGCCGGCCGGCGAAACTTGGGAGTTGCTTCGACGTTTGCTAGCTTTTTCTTTTTTCCTTCCTGTTGTGTGTGTTTAATGAAGTTATGTGTGCCCTCACGTGCCTTGCACGTGTTTTTAATAATAAAGAATGCTGGTTTGTTGTGGTGATGTCATCTTATTTTGTTCTTATTTGGAGAGAGAAATATTTATACTTGGAGATTTTTTTAAGTGCTCTTGGTGTAATGAGATCCATAGTTTTAC

Coding sequence (CDS)

ATGGGAAGCAACGGGCCATCAGCTAAGCTTGAAAGGTCTCTCTCCTTGACCTCCGAGCCCAGGACTCTTACTAAGGAGCAGTATGACTTGACATTGGCGTCCATGCAGGCCTTGGAGAAACAGCGCCTCGCCGGAAACAATAATGGTTCAGAGAGTGGAGGAGCAAAGGGAAAAGCTGATCGTGATGAAGGGGCGTCGGGTTCGGCGGGGATGAAGCTTCCGGCGTGA

Protein sequence

MGSNGPSAKLERSLSLTSEPRTLTKEQYDLTLASMQALEKQRLAGNNNGSESGGAKGKADRDEGASGSAGMKLPA
Homology
[Close]
BLAST of Lcy09g010830 vs. NCBI nr
Match: KAE8647188.1 (hypothetical protein Csa_019045, partial [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-09
Identity = 47/78 (60.26%), Postives = 57/78 (73.08%), Query Frame = 0 

Query: 3   SNGPSAKLERSLSLTSEPRTLTKEQYDLTLASMQALEKQRLAGNNNG---------SESG 62
           +NGPS +LERSLSLTSEPRTL   QY++ +ASMQA+EKQRLAG NNG         + +G
Sbjct: 43  NNGPS-RLERSLSLTSEPRTL--RQYEMAIASMQAMEKQRLAGMNNGIFLQTTTPTTTTG 102

Query: 63  GAKGKADRDEGASGSAGM 72
           G KGK D +EGASG A +
Sbjct: 103 GTKGKVDGEEGASGGAAV 117

[Close]
BLAST of Lcy09g010830 vs. NCBI nr
Match: XP_031743959.1 (mini-chromosome maintenance complex-binding protein-like [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-09
Identity = 47/78 (60.26%), Postives = 57/78 (73.08%), Query Frame = 0 

Query: 3  SNGPSAKLERSLSLTSEPRTLTKEQYDLTLASMQALEKQRLAGNNNG---------SESG 62
          +NGPS +LERSLSLTSEPRTL   QY++ +ASMQA+EKQRLAG NNG         + +G
Sbjct: 18 NNGPS-RLERSLSLTSEPRTL--RQYEMAIASMQAMEKQRLAGMNNGIFLQTTTPTTTTG 77

Query: 63 GAKGKADRDEGASGSAGM 72
          G KGK D +EGASG A +
Sbjct: 78 GTKGKVDGEEGASGGAAV 92

[Close]
BLAST of Lcy09g010830 vs. NCBI nr
Match: KAG6602154.1 (hypothetical protein SDJN03_07387, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-04
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 0 

Query: 1  MGSNGPSAKLERSLSLTSEPRTLTKEQYDLTLASMQALEK-QRLAGNNNGSESGGAKGKA 60
          M +NGP AKLERSLSLTSEPRTLTK+QY + LASMQA+++ QRL    + +E G    KA
Sbjct: 1  MATNGP-AKLERSLSLTSEPRTLTKKQYQMALASMQAIDRQQRLIDAIDAAEPGPETMKA 60

Query: 61 --------DRDEGASGSAGMKLPA 76
                  +  E  + +A  +LPA
Sbjct: 61 MTENPPSGETSEATAAAAEERLPA 83

The following BLAST results are available for this feature:
BLAST of Lcy09g010830 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy09g010830 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy09g010830 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647188.11.9e-0960.26hypothetical protein Csa_019045, partial [Cucumis sativus][more]
XP_031743959.11.9e-0960.26mini-chromosome maintenance complex-binding protein-like [Cucumis sativus][more]
KAG6602154.11.8e-0450.00hypothetical protein SDJN03_07387, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lcy09g010830 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy09g010830.1Lcy09g010830.1mRNA